HHsearch alignment for GI: 254780920 and conserved domain: cd00300

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.26  E-value=0.037  Score=32.46  Aligned_cols=185  Identities=12%  Similarity=0.055  Sum_probs=88.4

Q ss_pred             EEEECCCCHHHHHHHHHHHHHC-CCEEEEEECCCC--CCCHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHCCCCEEE
Q ss_conf             8997678827799999999868-987999947887--658567776203-797499976388999999998622787178
Q gi|254780920|r    3 LIVTGGAGFIGSALCRYLVNDL-KIQVLVIDKLTY--AGNLNSLKEISQ-SNLFSFLQVDICDRECIRSALKEFQPDAIV   78 (358)
Q Consensus         3 ILItG~tGfIGs~l~~~Ll~~~-~~~V~~~d~~~~--~~~~~~~~~~~~-~~~v~~i~~Di~d~~~l~~~~~~~~~d~Vi   78 (358)
T Consensus         1 V~IIGa-G~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~~~~~~~~~~~~~~~~--~~~---~-~~d--aDvvV   71 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGG--DYA---D-AAD--ADIVV   71 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECCC--CHH---H-HCC--CCEEE
T ss_conf             989896-88999999999867998879998189981156888877256346885398279--889---9-679--99999


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             51234332222222222222222222024788865123221124784278630554311222222222222222222223
Q gi|254780920|r   79 NFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYS  158 (358)
Q Consensus        79 HlAa~~~~~~~~~~p~~~~~~Nv~gt~nil~~~~~~~~~~~~~~~~~~~~v~~SS~~vYg~~~~~~~~E~~~~~p~s~Yg  158 (358)
T Consensus        72 itaG~~rkp--g~tR~dll~~Na~I~k~i~~~i~~~~--------p~~ivivvtN-Pv--Dv~t~~~~k~sg~p~~rviG  138 (300)
T cd00300          72 ITAGAPRKP--GETRLDLINRNAPILRSVITNLKKYG--------PDAIILVVSN-PV--DILTYVAQKLSGLPKNRVIG  138 (300)
T ss_pred             ECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHCC--------CCCEEEECCC-CH--HHHHHHHHHHHCCCHHHEEE
T ss_conf             878989997--99889999988899999999998419--------9718998579-66--99999999961988442875


Q ss_pred             C-CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3-32210000001233322222222222223332222222222222222222222
Q gi|254780920|r  159 A-TKASSDYLVLAWGHTYGIPVLLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVF  212 (358)
Q Consensus       159 ~-sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~  212 (358)
T Consensus       139 ~gT~LDs~R~~~~la~~l~v~~~~V~~-~ViGeHG--ds~vp~~S~~~v~G~~~~  190 (300)
T cd00300         139 SGTLLDSARFRSLLAEKLDVDPQSVHA-YVLGEHG--DSQVVAWSTATVGGLPLE  190 (300)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCC-EEEECCC--CCEEEECCCCEECCEEHH
T ss_conf             365489999999998761989000556-2552578--835762200579989979