HHsearch alignment for GI: 254780920 and conserved domain: cd01338
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.77 E-value=1.3e-05 Score=53.61 Aligned_cols=190 Identities=15% Similarity=0.128 Sum_probs=89.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHH--CC----CEEEEEECCCCCCCHHHHH-HHHC--CCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 94899767882779999999986--89----8799994788765856777-6203--79749997638899999999862
Q gi|254780920|r 1 MRLIVTGGAGFIGSALCRYLVND--LK----IQVLVIDKLTYAGNLNSLK-EISQ--SNLFSFLQVDICDRECIRSALKE 71 (358)
Q Consensus 1 MkILItG~tGfIGs~l~~~Ll~~--~~----~~V~~~d~~~~~~~~~~~~-~~~~--~~~v~~i~~Di~d~~~l~~~~~~ 71 (358)
T Consensus 3 ~KV~IiGAaG~IG~~la~~la~g~l~g~~~~v~l~L~Di~~~~~~l~G~amDl~~~a~~~~~~v~~----~~~~~~a~~~ 78 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI----TDDPNVAFKD 78 (322)
T ss_pred EEEEEECCCCHHHHHHHHHHHHCHHCCCCCEEEEEEECCCCCCCCCCEEEEEHHHCCCCCCCCEEE----ECCHHHHHCC
T ss_conf 099998999689999999997111307997269999757575666765774453267654587797----4887898378
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCC---CCCCCCCCCCCCCC
Q ss_conf 278717851234332222222222222222222024788865123221124784278630554---31122222222222
Q gi|254780920|r 72 FQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQDKKDQFRFLQISTD---EVYGSLDKGLFSED 148 (358)
Q Consensus 72 ~~~d~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nil~~~~~~~~~~~~~~~~~~~~v~~SS~---~vYg~~~~~~~~E~ 148 (358)
T Consensus 79 --aDvVvitaG~prkP--G~tR~DLl~~Na~I~~~~~~~i~~~------a~p~-~~vivvsNPvd~~~~v-----~~k~~ 142 (322)
T cd01338 79 --ADWALLVGAKPRGP--GMERADLLKANGKIFTAQGKALNDV------ASRD-VKVLVVGNPCNTNALI-----AMKNA 142 (322)
T ss_pred --CCEEEEECCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHH------CCCC-CEEEEECCHHHHHHHH-----HHHHC
T ss_conf --87899936878998--9818999998689999999999975------7988-3899957818889999-----99976
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2222222223332210000001233322222222222223332222222222222222222222
Q gi|254780920|r 149 MPYNPSSPYSATKASSDYLVLAWGHTYGIPVLLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVF 212 (358)
Q Consensus 149 ~~~~p~s~Yg~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~ 212 (358)
T Consensus 143 ~~~~~~~i~~~t~LDs~R~r~~la~~l~v~~~~V~~~vv~G~HG--ds~vp~~s~a~V~G~pl~ 204 (322)
T cd01338 143 PDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHS--PTQYPDFTNATIGGKPAA 204 (322)
T ss_pred CCCCHHHEEEEEHHHHHHHHHHHHHHHCCCHHHCEEEEEEECCC--CCEEECCCCCEECCEEHH
T ss_conf 89974609996349999999999998497967754558970588--827742125659889989