HHsearch alignment for GI: 254780920 and conserved domain: cd01339
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=93.85 E-value=0.069 Score=30.83 Aligned_cols=184 Identities=14% Similarity=0.130 Sum_probs=87.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCC--CCHHHHHHHH--CCCCEEEEECCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 89976788277999999998689879999478876--5856777620--3797499976388999999998622787178
Q gi|254780920|r 3 LIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYA--GNLNSLKEIS--QSNLFSFLQVDICDRECIRSALKEFQPDAIV 78 (358)
Q Consensus 3 ILItG~tGfIGs~l~~~Ll~~~~~~V~~~d~~~~~--~~~~~~~~~~--~~~~v~~i~~Di~d~~~l~~~~~~~~~d~Vi 78 (358)
T Consensus 1 V~IIGa-G~VG~~~a~~l~~~~~~el~L~D~~~~~a~g~a~DL~~~~~~~~~~~~v~~~~--d~~~----~~d--aDvvV 71 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTN--DYED----IAG--SDVVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECC--CHHH----HCC--CCEEE
T ss_conf 989896-88899999999857996799980999800579887761320158985899478--8799----479--98999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5123433222222222222222222202478886512322112478427863055-431122222222222222222222
Q gi|254780920|r 79 NFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQDKKDQFRFLQIST-DEVYGSLDKGLFSEDMPYNPSSPY 157 (358)
Q Consensus 79 HlAa~~~~~~~~~~p~~~~~~Nv~gt~nil~~~~~~~~~~~~~~~~~~~~v~~SS-~~vYg~~~~~~~~E~~~~~p~s~Y 157 (358)
T Consensus 72 itaG~~~k~--g~tR~dLl~~N~~I~~~i~~~i~~~~-------p~-~i~lvvsNPvDv----~t~~~~k~sg~p~~rvi 137 (300)
T cd01339 72 ITAGIPRKP--GMSRDDLLGTNAKIVKEVAENIKKYA-------PN-AIVIVVTNPLDV----MTYVAYKASGFPRNRVI 137 (300)
T ss_pred EECCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHC-------CC-CEEEECCCCHHH----HHHHHHHHHCCCHHHEE
T ss_conf 906778998--99889999988999999999999659-------98-489982793899----99999997298845523
Q ss_pred CCC-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 333-2210000001233322222222222223332222222222222222222222
Q gi|254780920|r 158 SAT-KASSDYLVLAWGHTYGIPVLLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVF 212 (358)
Q Consensus 158 g~s-K~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~ 212 (358)
T Consensus 138 G~gt~LDs~R~r~~la~~l~v~~~~V~-~~ViGeHG--ds~vp~wS~~~v~G~~~~ 190 (300)
T cd01339 138 GMAGVLDSARFRYFIAEELGVSVKDVQ-AMVLGGHG--DTMVPLPRYSTVGGIPLT 190 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHCE-EEEEECCC--CCEEEEEEEEEECCCCHH
T ss_conf 333117889999999999599954606-76665478--856765677588883267