HHsearch alignment for GI: 254780920 and conserved domain: cd01339

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=93.85  E-value=0.069  Score=30.83  Aligned_cols=184  Identities=14%  Similarity=0.130  Sum_probs=87.0

Q ss_pred             EEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCC--CCHHHHHHHH--CCCCEEEEECCCCCHHHHHHHHHHCCCCEEE
Q ss_conf             89976788277999999998689879999478876--5856777620--3797499976388999999998622787178
Q gi|254780920|r    3 LIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYA--GNLNSLKEIS--QSNLFSFLQVDICDRECIRSALKEFQPDAIV   78 (358)
Q Consensus         3 ILItG~tGfIGs~l~~~Ll~~~~~~V~~~d~~~~~--~~~~~~~~~~--~~~~v~~i~~Di~d~~~l~~~~~~~~~d~Vi   78 (358)
T Consensus         1 V~IIGa-G~VG~~~a~~l~~~~~~el~L~D~~~~~a~g~a~DL~~~~~~~~~~~~v~~~~--d~~~----~~d--aDvvV   71 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTN--DYED----IAG--SDVVV   71 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECC--CHHH----HCC--CCEEE
T ss_conf             989896-88899999999857996799980999800579887761320158985899478--8799----479--98999


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             5123433222222222222222222202478886512322112478427863055-431122222222222222222222
Q gi|254780920|r   79 NFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQDKKDQFRFLQIST-DEVYGSLDKGLFSEDMPYNPSSPY  157 (358)
Q Consensus        79 HlAa~~~~~~~~~~p~~~~~~Nv~gt~nil~~~~~~~~~~~~~~~~~~~~v~~SS-~~vYg~~~~~~~~E~~~~~p~s~Y  157 (358)
T Consensus        72 itaG~~~k~--g~tR~dLl~~N~~I~~~i~~~i~~~~-------p~-~i~lvvsNPvDv----~t~~~~k~sg~p~~rvi  137 (300)
T cd01339          72 ITAGIPRKP--GMSRDDLLGTNAKIVKEVAENIKKYA-------PN-AIVIVVTNPLDV----MTYVAYKASGFPRNRVI  137 (300)
T ss_pred             EECCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHC-------CC-CEEEECCCCHHH----HHHHHHHHHCCCHHHEE
T ss_conf             906778998--99889999988999999999999659-------98-489982793899----99999997298845523


Q ss_pred             CCC-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             333-2210000001233322222222222223332222222222222222222222
Q gi|254780920|r  158 SAT-KASSDYLVLAWGHTYGIPVLLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVF  212 (358)
Q Consensus       158 g~s-K~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~  212 (358)
T Consensus       138 G~gt~LDs~R~r~~la~~l~v~~~~V~-~~ViGeHG--ds~vp~wS~~~v~G~~~~  190 (300)
T cd01339         138 GMAGVLDSARFRYFIAEELGVSVKDVQ-AMVLGGHG--DTMVPLPRYSTVGGIPLT  190 (300)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHCE-EEEEECCC--CCEEEEEEEEEECCCCHH
T ss_conf             333117889999999999599954606-76665478--856765677588883267