HHsearch alignment for GI: 254780920 and conserved domain: pfam03054

>pfam03054 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs.

Probab=91.02  E-value=0.68  Score=24.74  Aligned_cols=60  Identities=15%  Similarity=0.283  Sum_probs=38.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC------------CHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             94899767882779999999986898799994788765------------85677762037974999763889
Q gi|254780920|r    1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAG------------NLNSLKEISQSNLFSFLQVDICD   61 (358)
Q Consensus         1 MkILItG~tGfIGs~l~~~Ll~~~~~~V~~~d~~~~~~------------~~~~~~~~~~~~~v~~i~~Di~d   61 (358)
T Consensus         1 mkV~V-amSGGVDSsVaA~LL~~~Gy~V~Gv~m~~w~~~~~~~~~C~~~~d~~dA~~va~~LgIp~~v~d~~~   72 (354)
T pfam03054         1 MKVVV-AMSGGVDSSVAAYLLKEQGYEVIGVFMKNWDEEDEFGHGCCSEEDLADAQRVCEQLGIPLYVVNFEK   72 (354)
T ss_pred             CEEEE-EECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHH
T ss_conf             96999-9047899999999999779963999999566887667889988999999999998699789978799