HHsearch alignment for GI: 254780920 and conserved domain: pfam05368
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=99.93 E-value=1.4e-25 Score=175.70 Aligned_cols=227 Identities=16% Similarity=0.152 Sum_probs=156.8
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECC
Q ss_conf 89976788277999999998689879999478876585677762037974999763889999999986227871785123
Q gi|254780920|r 3 LIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDRECIRSALKEFQPDAIVNFAA 82 (358)
Q Consensus 3 ILItG~tGfIGs~l~~~Ll~~~~~~V~~~d~~~~~~~~~~~~~~~~~~~v~~i~~Di~d~~~l~~~~~~~~~d~ViHlAa 82 (358)
T Consensus 1 IlV~GatG~iG~~vv~~L~~~-g~~Vr~l~R~~~~---~~~~~l-~~~gve~v~gD~~d~~sl~~al~gv--d~v~~~~~ 73 (232)
T pfam05368 1 ILVFGATGYQGGSVVRASLKA-GHPVRALVRDPKS---ELAKSL-KAAGVELVEGDLDDHESLVEALKGV--DVVFSVTG 73 (232)
T ss_pred EEEECCCHHHHHHHHHHHHHC-CCCEEEEECCCCH---HHHHHH-HHCCCEEEEECCCCHHHHHHHHCCC--CEEEEECC
T ss_conf 099896828999999999858-9938999718736---656666-4179889990688878999996799--88999158
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43322222222222222222220247888651232211247842786305543112222222222222222222233322
Q gi|254780920|r 83 ESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKA 162 (358)
Q Consensus 83 ~~~~~~~~~~p~~~~~~Nv~gt~nil~~~~~~~~~~~~~~~~~~~~v~~SS~~vYg~~~~~~~~E~~~~~p~s~Yg~sK~ 162 (358)
T Consensus 74 ~~~------------~~~~~~~~~~~~AA~---------~aGVk~~V~ss~~~~--------~~~~~~~~~~~~~~~~K~ 124 (232)
T pfam05368 74 FWL------------SKEIEDGKKLADAAK---------EAGVKHFIPSEFGND--------VDRSNGVEPAVPHFDSKA 124 (232)
T ss_pred CCC------------CHHHHHHHHHHHHHH---------HCCCCCEEEEEECCC--------CCCCCCCCCCCHHHHHHH
T ss_conf 874------------177999999999999---------739983455550125--------545676665527889899
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCEEECCCCCC
Q ss_conf 10000001233322222222222223332222222222222222222222222223322-11332222000000012222
Q gi|254780920|r 163 SSDYLVLAWGHTYGIPVLLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLYGDGQNVR-DWLYVEDHVRALYLVLKKGR 241 (358)
Q Consensus 163 ~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~i~g~g~~~R-dfi~v~D~a~~i~~~~~~~~ 241 (358)
T Consensus 125 ~~e~~l~----~~g~~~tilrp~~f~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dva~~~~~~l~~p~ 197 (232)
T pfam05368 125 EVERYIR----ALGIPYTFVYAGFFMGNFLSN--LA-PPGDLAPPRDKVTLLGPGNPKAVPLDDEEDIGTYVIKILDDPR 197 (232)
T ss_pred HHHHHHH----HHCCCEEEEECCCHHHHHHHH--HH-HHHHCCCCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHCCHH
T ss_conf 9999999----819985999684254301656--54-4320257653699944898761126528899999999964912
Q ss_pred -CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf -2221113578642026889999886034265
Q gi|254780920|r 242 -IGERYNIGGNNERKNIDIVFEIGFLLDALIP 272 (358)
Q Consensus 242 -~~~~fNigs~~~~s~~e~~~~i~~~~~~~~~ 272 (358)
T Consensus 198 ~~~~~~~~~~~~~lT~~Eia~~~~~~~Gr~v~ 229 (232)
T pfam05368 198 KLKGKYIRPPGNILSGNEIAELWSKKIGKTVK 229 (232)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 11999998289867999999999998899837