RPSBLAST alignment for GI: 254780920 and conserved domain: TIGR01472

>gnl|CDD|162378 TIGR01472, gmd, GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). Length = 343
 Score = 87.6 bits (217), Expect = 4e-18
 Identities = 78/289 (26%), Positives = 132/289 (45%), Gaps = 34/289 (11%)

Query: 58  DICDRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSC 117
           D+ D   +R  + E +P  I N AA+SHV  S    +     + IGT  LLE  R     
Sbjct: 63  DLTDSSNLRRIIDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVR----- 117

Query: 118 LSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTYGI 177
            +       +F Q ST E+YG + +   +E  P+ P SPY+A K  + ++ + +   YG+
Sbjct: 118 -TLGLIKSVKFYQASTSELYGKVQEIPQNETTPFYPRSPYAAAKLYAHWITVNYREAYGL 176

Query: 178 ----PVLLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLY-GDGQNVRDWLYVEDHVRA 232
                +L ++ S   G  +F  + I  A  ++  G    LY G+    RDW + +D+V A
Sbjct: 177 FAVNGILFNHESPRRGE-NFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDYVEA 235

Query: 233 LYLVLKKGRIGERYNIG---GNNERKNIDIVFEIGFLLDALIPKSYSHTELIRFIEDRPG 289
           ++L+L++ +  + Y I     ++ R+ +++ FE  ++   L  K     E+ R  E    
Sbjct: 236 MWLMLQQDKPDD-YVIATGETHSVREFVEVSFE--YIGKTLNWKDKGINEVGRCKETGKV 292

Query: 290 H---DRRY---------AIDSSKIKSEIGWFPQENMESGLNKTVCWYLD 326
           H   D RY           D++K K ++GW P    E    K V   ++
Sbjct: 293 HVEIDPRYFRPTEVDLLLGDATKAKEKLGWKP----EVSFEKLVKEMVE 337