RPSBLAST alignment for GI: 254780920 and conserved domain: TIGR01472
>gnl|CDD|162378 TIGR01472, gmd, GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). Length = 343
Score = 87.6 bits (217), Expect = 4e-18
Identities = 78/289 (26%), Positives = 132/289 (45%), Gaps = 34/289 (11%)
Query: 58 DICDRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSC 117
D+ D +R + E +P I N AA+SHV S + + IGT LLE R
Sbjct: 63 DLTDSSNLRRIIDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVR----- 117
Query: 118 LSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTYGI 177
+ +F Q ST E+YG + + +E P+ P SPY+A K + ++ + + YG+
Sbjct: 118 -TLGLIKSVKFYQASTSELYGKVQEIPQNETTPFYPRSPYAAAKLYAHWITVNYREAYGL 176
Query: 178 ----PVLLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLY-GDGQNVRDWLYVEDHVRA 232
+L ++ S G +F + I A ++ G LY G+ RDW + +D+V A
Sbjct: 177 FAVNGILFNHESPRRGE-NFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDYVEA 235
Query: 233 LYLVLKKGRIGERYNIG---GNNERKNIDIVFEIGFLLDALIPKSYSHTELIRFIEDRPG 289
++L+L++ + + Y I ++ R+ +++ FE ++ L K E+ R E
Sbjct: 236 MWLMLQQDKPDD-YVIATGETHSVREFVEVSFE--YIGKTLNWKDKGINEVGRCKETGKV 292
Query: 290 H---DRRY---------AIDSSKIKSEIGWFPQENMESGLNKTVCWYLD 326
H D RY D++K K ++GW P E K V ++
Sbjct: 293 HVEIDPRYFRPTEVDLLLGDATKAKEKLGWKP----EVSFEKLVKEMVE 337