HHsearch alignment for GI: 254780921 and conserved domain: COG1089
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].
Probab=99.95 E-value=1.2e-27 Score=174.86 Aligned_cols=276 Identities=21% Similarity=0.215 Sum_probs=198.1
Q ss_pred CE-EEEECCCCHHHHHHHHHH-HCCCEEEEECHH-------------------------HCCCCCHHHHHHHHHHCCCCE
Q ss_conf 94-999978897889999999-649859996136-------------------------708789999999997559989
Q gi|254780921|r 1 MK-CLVIGNNGQIAQSLSSMC-VQDVEIIRVGRP-------------------------DIDLLKPKDFASFFLSFSPDV 53 (290)
Q Consensus 1 Mk-iLVtG~~G~iG~~l~~~l-~~~~~v~~~~r~-------------------------~~D~~~~~~~~~~l~~~~pd~ 53 (290)
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~PdE 81 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPDE 81 (345)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCHH
T ss_conf 72699954458753899999985694898786033557765301111655578617999655435688999998609445
Q ss_pred EEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 997863445432233221024201222110001122333---33344553211135755442111122221110124566
Q gi|254780921|r 54 IINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIG---IPCIYISTDYVFDGLSRTPIDEFSPTNPLNIYGKSKLA 130 (290)
Q Consensus 54 Vih~Aa~~~~~~~e~~~~~~~~~Nv~~~~~l~~~~~~~~---~~~I~iSS~~Vy~g~~~~p~~E~d~~~P~~~Yg~sK~~ 130 (290)
T Consensus 82 IYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~TPFyPrSPYAvAKlY 161 (345)
T COG1089 82 IYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLY 161 (345)
T ss_pred HEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 33034323455303586402531006788999999974876607996561776067666754468999889778899987
Q ss_pred HHHHHCCCCCCCCCCCC-CCCE---ECC-CCCCCC-EEEC---CCCCC--CCEEECC-CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 66531012223223555-4200---036-863200-0201---12466--5215304-5545445223689999999984
Q gi|254780921|r 131 GEEKVASYTNNYVILRT-AWVY---SIF-GSNFLL-SMLR---LAKER--REISVVC-DQFGTPTSALQIARAIIQIAHN 198 (290)
Q Consensus 131 ~E~~v~~~~~~~~IlR~-~~vy---G~~-~~~~v~-~~l~---~~~~~--~~i~~~~-d~~~~p~~v~D~a~~i~~~~~~ 198 (290)
T Consensus 162 a~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYVe~mwlmLQq 241 (345)
T COG1089 162 AYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEAMWLMLQQ 241 (345)
T ss_pred HHHEEEEHHHHCCCEEECCEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 77603014763473343114433789877531033899999999870661268743633102343167899999999744
Q ss_pred HHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCC------H--------HEEECCHHHHCCCCCCCCCC---
Q ss_conf 420244334431376238666788999999999999727980------0--------05762858808768997511---
Q gi|254780921|r 199 LIENSDTSLRGIFHMTADGGPVSWADFAEYIFWESAERGGPY------S--------KVYRIFTKQYPTKAHRPAYS--- 261 (290)
Q Consensus 199 ~~~~~~~~~~Giyn~~~~~~~~s~~e~a~~I~~~~~~~~~~~------~--------~i~~~~~~~~~~~a~RP~~~--- 261 (290)
T Consensus 242 ~~-------PddyViAT-g~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~tG~~~V~idp-~~----fRPaEVd~L 308 (345)
T COG1089 242 EE-------PDDYVIAT-GETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDP-RY----FRPAEVDLL 308 (345)
T ss_pred CC-------CCCEEEEC-CCEEEHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECC-CC----CCCHHHHHH
T ss_conf 79-------98448852-7522399999999997085588730355311312456752699870-10----683125565
Q ss_pred CCCHHHHHHHHCCCCC-CHHHHHHHHHHH
Q ss_conf 0086899996178999-989999999971
Q gi|254780921|r 262 CLDCSKLANTHNIRIS-TWKEGVRNILVN 289 (290)
Q Consensus 262 ~Ld~~K~~~~lg~~~~-~~~e~i~~~i~~ 289 (290)
T Consensus 309 lgdp~KA~~~LGW~~~~~~~elv~~Mv~~ 337 (345)
T COG1089 309 LGDPTKAKEKLGWRPEVSLEELVREMVEA 337 (345)
T ss_pred CCCHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 28878989970996666799999999999