HHsearch alignment for GI: 254780921 and conserved domain: PRK05294
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed.
Probab=95.74 E-value=0.046 Score=30.86 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=71.6
Q ss_pred EEEEECCCC----------HHHHHHHHHH-HCCCEEEEECHHH------CCC--------CCHHHHHHHHHHCCCCEEEE
Q ss_conf 499997889----------7889999999-6498599961367------087--------89999999997559989997
Q gi|254780921|r 2 KCLVIGNNG----------QIAQSLSSMC-VQDVEIIRVGRPD------IDL--------LKPKDFASFFLSFSPDVIIN 56 (290)
Q Consensus 2 kiLVtG~~G----------~iG~~l~~~l-~~~~~v~~~~r~~------~D~--------~~~~~~~~~l~~~~pd~Vih 56 (290)
T Consensus 9 kvLviGsGp~~IGqa~EfDysg~qa~~al~e~g~~vilvN~NpaTv~Td~~~ad~vY~ePlt~e~v~~Ii~~E~Pd~il~ 88 (1063)
T PRK05294 9 KILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPDAILP 88 (1063)
T ss_pred EEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEE
T ss_conf 89998988251037233265699999999986998999879854410787766437872798999999999759997886
Q ss_pred -CCCCCCCCCCCCCCCEEEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCHHHHH
Q ss_conf -863445432233221024201222110001--1223333334455321113575544----211112222111012456
Q gi|254780921|r 57 -PAAYTAVDKAEDEPEIAFSINAEGAGAIAK--AADSIGIPCIYISTDYVFDGLSRTP----IDEFSPTNPLNIYGKSKL 129 (290)
Q Consensus 57 -~Aa~~~~~~~e~~~~~~~~~Nv~~~~~l~~--~~~~~~~~~I~iSS~~Vy~g~~~~p----~~E~d~~~P~~~Yg~sK~ 129 (290)
T Consensus 89 ~~GGQtaLnla---------------~~L~~~GiL~~~~v~lLGt~~~~I~~aedR~~F~~~l~~i~~p~~~s~~~~s~~ 153 (1063)
T PRK05294 89 TMGGQTALNLA---------------LELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHTME 153 (1063)
T ss_pred CCCCHHHHHHH---------------HHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCCCHH
T ss_conf 67780599999---------------999975967764972756999999977789999999997699999725309999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 6665310122232235554200036863
Q gi|254780921|r 130 AGEEKVASYTNNYVILRTAWVYSIFGSN 157 (290)
Q Consensus 130 ~~E~~v~~~~~~~~IlR~~~vyG~~~~~ 157 (290)
T Consensus 154 ea~~~a~~ig-yPvivRps~~LGG~g~~ 180 (1063)
T PRK05294 154 EALEVAEEIG-YPVIIRPSFTLGGTGGG 180 (1063)
T ss_pred HHHHHHHHCC-CCEEEEECCCCCCCCCE
T ss_conf 9999998659-98899844216787640