HHsearch alignment for GI: 254780921 and conserved domain: TIGR01472
>TIGR01472 gmd GDP-mannose 4,6-dehydratase; InterPro: IPR006368 This family represent GDP-mannose 4,6-dehydratase, also known as GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of Escherichia coli. Excluded from this family are members of the clade that are poorly related because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase .; GO: 0008446 GDP-mannose 46-dehydratase activity, 0019673 GDP-mannose metabolic process, 0005622 intracellular.
Probab=99.95 E-value=7.8e-27 Score=170.25 Aligned_cols=276 Identities=20% Similarity=0.226 Sum_probs=198.2
Q ss_pred EEEECCCCHHHHHHHHHH-HCCCEEEEECHH----------------------H-------CCCCCHHHHHHHHHHCCCC
Q ss_conf 999978897889999999-649859996136----------------------7-------0878999999999755998
Q gi|254780921|r 3 CLVIGNNGQIAQSLSSMC-VQDVEIIRVGRP----------------------D-------IDLLKPKDFASFFLSFSPD 52 (290)
Q Consensus 3 iLVtG~~G~iG~~l~~~l-~~~~~v~~~~r~----------------------~-------~D~~~~~~~~~~l~~~~pd 52 (290)
T Consensus 3 ALiTGiTGQDGSYLAE~LL~~GYeVHG~~RRSSSfNT~Ri~hiY~~~h~~~~r~A~~fLHYGDlTDs~~L~~~i~~~kP~ 82 (365)
T TIGR01472 3 ALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHKEEKRRALMFLHYGDLTDSSNLVKLIDEIKPT 82 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 68834555767899999872696876458625542522456764053541016613542044210689999997404886
Q ss_pred EEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC---CCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 9997863445432233221024201222110001122---333----333445532111357554421111222211101
Q gi|254780921|r 53 VIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAAD---SIG----IPCIYISTDYVFDGLSRTPIDEFSPTNPLNIYG 125 (290)
Q Consensus 53 ~Vih~Aa~~~~~~~e~~~~~~~~~Nv~~~~~l~~~~~---~~~----~~~I~iSS~~Vy~g~~~~p~~E~d~~~P~~~Yg 125 (290)
T Consensus 83 EiYNLAAQSHV~VSFe~PeYTa~~~g~GTLrlLEA~r~hni~gl~~~~rFYQAStSElYG~v~~~PQ~E~TPF~PRSPYA 162 (365)
T TIGR01472 83 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRSHNILGLIKEIRFYQASTSELYGEVQEIPQNETTPFYPRSPYA 162 (365)
T ss_pred EEECCCCCCCEEEECCCCCCHHCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 34202023710354165200001244317789998742334141203025524523113655578888888768887689
Q ss_pred HHHHHHHHHHCCCCCCCCCC-CCCCCE---EC-CCCCCCC-EEECC---CCCCCCEEEC-CC-----CCCCCCCHHHHHH
Q ss_conf 24566665310122232235-554200---03-6863200-02011---2466521530-45-----5454452236899
Q gi|254780921|r 126 KSKLAGEEKVASYTNNYVIL-RTAWVY---SI-FGSNFLL-SMLRL---AKERREISVV-CD-----QFGTPTSALQIAR 190 (290)
Q Consensus 126 ~sK~~~E~~v~~~~~~~~Il-R~~~vy---G~-~~~~~v~-~~l~~---~~~~~~i~~~-~d-----~~~~p~~v~D~a~ 190 (290)
T Consensus 163 aAK~yA~w~tvNYREAYgL~A~nGILFNHESP~RGetFVTRKITra~a~I~~G~~~~lyLGNLdA~RDWG---hAkDYV~ 239 (365)
T TIGR01472 163 AAKLYAYWITVNYREAYGLFAVNGILFNHESPRRGETFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWG---HAKDYVE 239 (365)
T ss_pred HHHHHHHHHEEEEECCCCCCHHCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC---CHHHHHH
T ss_conf 9988454310212100341000352104678877885322589999999861563111202754410665---0566999
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCH----HEEECCHHH------HC--------
Q ss_conf 999999844202443344313762386667889999999999997279800----057628588------08--------
Q gi|254780921|r 191 AIIQIAHNLIENSDTSLRGIFHMTADGGPVSWADFAEYIFWESAERGGPYS----KVYRIFTKQ------YP-------- 252 (290)
Q Consensus 191 ~i~~~~~~~~~~~~~~~~Giyn~~~~~~~~s~~e~a~~I~~~~~~~~~~~~----~i~~~~~~~------~~-------- 252 (290)
T Consensus 240 aMWLMLQ~d~-------P~DYViA-TG~t~SVrefve~SF~~~G~~l~W~~~g~~E~G~~~~~dekranalklnlshlkk 311 (365)
T TIGR01472 240 AMWLMLQQDK-------PDDYVIA-TGETHSVREFVEVSFELVGITLEWKDKGIEEVGLIKETDEKRANALKLNLSHLKK 311 (365)
T ss_pred HHHHHCCCCC-------CCCEEEE-CCCEEEHHHHHHHHHHHCCCEEEECCCCCCEECCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9887527868-------8976887-5733338889999887409736862688202113012335557777653444137
Q ss_pred CC-----C---CCCC--CCCC-CHHHHHHHHCCCCC-CHHHHHHHHHHH
Q ss_conf 76-----8---9975--1100-86899996178999-989999999971
Q gi|254780921|r 253 TK-----A---HRPA--YSCL-DCSKLANTHNIRIS-TWKEGVRNILVN 289 (290)
Q Consensus 253 ~~-----a---~RP~--~~~L-d~~K~~~~lg~~~~-~~~e~i~~~i~~ 289 (290)
T Consensus 312 Gk~~V~iD~rYfRPTEVDlL~GD~~KAk~~LgW~~~~~f~~Lvk~Mv~~ 360 (365)
T TIGR01472 312 GKVVVEIDPRYFRPTEVDLLLGDATKAKEKLGWKPEVSFEELVKEMVEE 360 (365)
T ss_pred CCEEEEECCCCCCCHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 7079996486578514230178834889736882455778999999999