HHsearch alignment for GI: 254780921 and conserved domain: TIGR01777
>TIGR01777 yfcH conserved hypothetical protein TIGR01777; InterPro: IPR010099 This entry represents proteins of unknown function including the Escherichia coli YfcH protein..
Probab=99.93 E-value=3.4e-26 Score=166.69 Aligned_cols=262 Identities=19% Similarity=0.195 Sum_probs=170.8
Q ss_pred EEEECC-CCHHHHHHHHHH-HCCCEEEEECHHHC-----------CCCCH-------HHHH-HHHHHCCCCEEEECCCCC
Q ss_conf 999978-897889999999-64985999613670-----------87899-------9999-999755998999786344
Q gi|254780921|r 3 CLVIGN-NGQIAQSLSSMC-VQDVEIIRVGRPDI-----------DLLKP-------KDFA-SFFLSFSPDVIINPAAYT 61 (290)
Q Consensus 3 iLVtG~-~G~iG~~l~~~l-~~~~~v~~~~r~~~-----------D~~~~-------~~~~-~~l~~~~pd~Vih~Aa~~ 61 (290)
T Consensus 1 ~litGgnTGfiG~~L~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~W~~l~~--~DaviNLAG~~ 78 (307)
T TIGR01777 1 ILITGGNTGFIGRALTQRLTKSGHEVTILTRSPQAESNTKKVGYKNWLAEGKLGIVIAESGWSALEG--ADAVINLAGEP 78 (307)
T ss_pred CEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCHHCCCCCCC--CCEEEECCCCC
T ss_conf 9641533023789999999847998999961686432000255445555221245207220566788--62798556888
Q ss_pred CCC-C--CCCCCCEEEEECCCCCCCCCCCCCCC---CC-CCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 543-2--23322102420122211000112233---33-3344553211--13575544211112222111012456666
Q gi|254780921|r 62 AVD-K--AEDEPEIAFSINAEGAGAIAKAADSI---GI-PCIYISTDYV--FDGLSRTPIDEFSPTNPLNIYGKSKLAGE 132 (290)
Q Consensus 62 ~~~-~--~e~~~~~~~~~Nv~~~~~l~~~~~~~---~~-~~I~iSS~~V--y~g~~~~p~~E~d~~~P~~~Yg~sK~~~E 132 (290)
T Consensus 79 i~~P~RWt~~~K~~i~~SRi~~T~~L~~~i~~~~r~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~~~~ddF-la~lc~~ 157 (307)
T TIGR01777 79 IADPKRWTEERKQEIRDSRIDTTRALVEAIAAAPRAEQKPKVFISASAVGYYGHSEDRVFTEEDASGPGDDF-LAELCRD 157 (307)
T ss_pred CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCEEECCCCCCCCCCC-HHHHHHH
T ss_conf 577888787775756523347899999999846566788716885016663068998215116678887772-1899999
Q ss_pred --HH---HCCCCCCCCCCCCCCCEECCCCCCCCEEECCCC--CCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf --53---101222322355542000368632000201124--66521530455454452236899999999844202443
Q gi|254780921|r 133 --EK---VASYTNNYVILRTAWVYSIFGSNFLLSMLRLAK--ERREISVVCDQFGTPTSALQIARAIIQIAHNLIENSDT 205 (290)
Q Consensus 133 --~~---v~~~~~~~~IlR~~~vyG~~~~~~v~~~l~~~~--~~~~i~~~~d~~~~p~~v~D~a~~i~~~~~~~~~~~~~ 205 (290)
T Consensus 158 WE~~A~~a~~~g~Rvv~~R~G~VLg~~GG-aL~~m~~pf~~glGGpl-G~G~Q~~SWIH~~D~v~~I~~~l~~------~ 229 (307)
T TIGR01777 158 WEEAAQAAEQLGTRVVLLRTGIVLGPKGG-ALAKMLPPFRLGLGGPL-GSGRQWFSWIHIEDLVQLILFALEN------A 229 (307)
T ss_pred HHHHHHHHHHCCCCEEEEEEEEEECCCCC-CHHHHHHHHHHHCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHC------C
T ss_conf 99985105336873898764134708987-03454566765157423-6884145053588999999999855------8
Q ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHEEECCHHHHCCC-CCCCCCCCCC-----HHHHHHHHCCCC--C
Q ss_conf 3443137623866678899999999999972798000576285880876-8997511008-----689999617899--9
Q gi|254780921|r 206 SLRGIFHMTADGGPVSWADFAEYIFWESAERGGPYSKVYRIFTKQYPTK-AHRPAYSCLD-----CSKLANTHNIRI--S 277 (290)
Q Consensus 206 ~~~Giyn~~~~~~~~s~~e~a~~I~~~~~~~~~~~~~i~~~~~~~~~~~-a~RP~~~~Ld-----~~K~~~~lg~~~--~ 277 (290)
T Consensus 230 ~~~Gp~N~tAP-~Pv~n~~F~~~la~~l----~-RP~~~~vP~~~~~~~LGe~-a~~~L~gQrV~P~kl~~~-GF~F~Y~ 301 (307)
T TIGR01777 230 SVSGPVNATAP-EPVRNKEFAKALARAL----H-RPAFLPVPAFVLRLLLGEM-ADLLLKGQRVLPEKLLEA-GFQFQYP 301 (307)
T ss_pred CCCCCEEEECC-CCCCHHHHHHHHHHHH----C-CCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHC-CCEEECC
T ss_conf 99632541078-8635789999999981----8-9701011089999884255-888986578999999974-9766213
Q ss_pred CHHHHH
Q ss_conf 989999
Q gi|254780921|r 278 TWKEGV 283 (290)
Q Consensus 278 ~~~e~i 283 (290)
T Consensus 302 ~l~~AL 307 (307)
T TIGR01777 302 DLDEAL 307 (307)
T ss_pred CCCCCC
T ss_conf 320249