HHsearch alignment for GI: 254780921 and conserved domain: TIGR01832
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase; InterPro: IPR011286 This entry describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (IPR002198 from INTERPRO). This protein has been characterised in Erwinia chrysanthemi as an enzyme of pectin degradation .; GO: 0008678 2-deoxy-D-gluconate 3-dehydrogenase activity, 0051287 NAD binding.
Probab=97.46 E-value=0.00015 Score=44.79 Aligned_cols=130 Identities=22% Similarity=0.238 Sum_probs=92.9
Q ss_pred EEEEECCCCHHHHHHHHHH-HCCCEEEEEC-HHH-------------------CCCCCHHHHHHHHHH-----CCCCEEE
Q ss_conf 4999978897889999999-6498599961-367-------------------087899999999975-----5998999
Q gi|254780921|r 2 KCLVIGNNGQIAQSLSSMC-VQDVEIIRVG-RPD-------------------IDLLKPKDFASFFLS-----FSPDVII 55 (290)
Q Consensus 2 kiLVtG~~G~iG~~l~~~l-~~~~~v~~~~-r~~-------------------~D~~~~~~~~~~l~~-----~~pd~Vi 55 (290)
T Consensus 7 ~alvTGa~tGlGQG~a~gLA~AGadi~g~~~~~~~~ET~~~v~~~Gr~f~~~~~Dl~~~~~~~~~~~~~~~~~g~~DiLV 86 (249)
T TIGR01832 7 VALVTGANTGLGQGIAVGLAEAGADIVGVGHISEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGKIDILV 86 (249)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEHHHHHHHCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 68882598873689999998577417851431263888999998252100021212232137899999998618865676
Q ss_pred ECCCCC----CCCCCCCCCCEEEEECCCCCCCCCCC----CCCCC--CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 786344----54322332210242012221100011----22333--333445532111-35755442111122221110
Q gi|254780921|r 56 NPAAYT----AVDKAEDEPEIAFSINAEGAGAIAKA----ADSIG--IPCIYISTDYVF-DGLSRTPIDEFSPTNPLNIY 124 (290)
Q Consensus 56 h~Aa~~----~~~~~e~~~~~~~~~Nv~~~~~l~~~----~~~~~--~~~I~iSS~~Vy-~g~~~~p~~E~d~~~P~~~Y 124 (290)
T Consensus 87 NNAGIIrR~da~~f~e~dWd~V~nvNlk~vF~l~q~~a~~~l~~G~~GkiiNIAS~LSFQGGirVPsYT-ASK---~~v~ 162 (249)
T TIGR01832 87 NNAGIIRREDAVEFSEKDWDDVMNVNLKSVFFLTQAAAKQFLKQGRGGKIINIASLLSFQGGIRVPSYT-ASK---HGVA 162 (249)
T ss_pred ECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHCCCCCCHHHH-HHH---HHHH
T ss_conf 074221045775156144579998668999999999999999648995057514234422675512466-667---7777
Q ss_pred HHHHHHHHHHH
Q ss_conf 12456666531
Q gi|254780921|r 125 GKSKLAGEEKV 135 (290)
Q Consensus 125 g~sK~~~E~~v 135 (290)
T Consensus 163 GlTk~lAnEWa 173 (249)
T TIGR01832 163 GLTKLLANEWA 173 (249)
T ss_pred HHHHHHHHHHH
T ss_conf 78999998998