HHsearch alignment for GI: 254780921 and conserved domain: TIGR02197

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase; InterPro: IPR011912 Lipopolysaccharides (LPS) are glycolipids that consitutes the outer monolayer of the outer membranes of most Gram-negative bacteria . They consist of lipid A (endotoxin) which anchors LPS to the outer membrane, a non-repeating core oligosachharide, and an immunogenic O-antigen repeat polymer, which is an oligosaccharide of 1-40 units that variesbetween different strains of bacteria. Although the O-antigen and most of the core domain are not necessary for growth in the lab, they appear to help bacteria resist environmental stresses including the complement system and antibiotics. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of LPS in Gram-negative bacteria . This enzyme is homologous to UDP-glucose 4-epimerase (IPR005886 from INTERPRO) and belongs to the NAD dependent epimerase/dehydratase family. It participates in the biosynthetic pathway leading to incorporation of heptose, a conserved sugar, into the core region of LPS, performing the reaction shown below: ADP-D-glycero-D-manno-heptose = ADP-L-glycero-D-manno-heptose It is a homopentameric enzyme with each monomer composed of two domains: an N-terminal modified Rossman fold domain for NADP binding, and a C-terminal substrate binding domain.; GO: 0008712 ADP-glyceromanno-heptose 6-epimerase activity, 0050661 NADP binding, 0005975 carbohydrate metabolic process.
Probab=100.00  E-value=0  Score=282.94  Aligned_cols=277  Identities=19%  Similarity=0.248  Sum_probs=209.8

Q ss_pred             EEEECCCCHHHHHHHHHHHCCC---EEEEECH--H-------------H------------CCCCC-HHHHHHHHHH---
Q ss_conf             9999788978899999996498---5999613--6-------------7------------08789-9999999975---
Q gi|254780921|r    3 CLVIGNNGQIAQSLSSMCVQDV---EIIRVGR--P-------------D------------IDLLK-PKDFASFFLS---   48 (290)
Q Consensus         3 iLVtG~~G~iG~~l~~~l~~~~---~v~~~~r--~-------------~------------~D~~~-~~~~~~~l~~---   48 (290)
T Consensus         1 IiVTGGAGFIGSNlv~~LN~~gP~~dI~vvD~L~~~~~F~ng~~~slg~~kk~~Nl~~~~I~d~i~k~~~~~~l~~~~~~   80 (353)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGPETDILVVDNLRDDATFENGNPQSLGHFKKFLNLADLEIADYIDKDDLLDRLEKGSEA   80 (353)
T ss_pred             CEECCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCC
T ss_conf             95506763689999999964389542888740787552467774322342443255541121335885469999830201


Q ss_pred             -CCCCEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CC
Q ss_conf             -59989997863445432233221024201222110001122333333445532111357554421111222------21
Q gi|254780921|r   49 -FSPDVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGIPCIYISTDYVFDGLSRTPIDEFSPTN------PL  121 (290)
Q Consensus        49 -~~pd~Vih~Aa~~~~~~~e~~~~~~~~~Nv~~~~~l~~~~~~~~~~~I~iSS~~Vy~g~~~~p~~E~d~~~------P~  121 (290)
T Consensus        81 ~~~~~avfH~GAcS~--TTe~D~~~~m~nN~~ys~~Ll~~c~~~~~~~IYASSAatY-G~~~~~f~~~~~~e~L~kLrPl  157 (353)
T TIGR02197        81 LGKIEAVFHQGACSD--TTETDGEYMMENNYQYSKRLLDWCAEKGVPFIYASSAATY-GDGEAGFREDRELEELQKLRPL  157 (353)
T ss_pred             CCCCCEEEECCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHC-CCCCCCCCCCCCHHHHHHCCCC
T ss_conf             388337997331253--5886279999889999999999999648986885031210-7687777766565889751878


Q ss_pred             CCCHHHHHHHHHHHCCC-----CCC-CCC-CCCCCCEECCCC------CCCCEEECCCCCCCCEEEC--C-C------CC
Q ss_conf             11012456666531012-----223-223-555420003686------3200020112466521530--4-5------54
Q gi|254780921|r  122 NIYGKSKLAGEEKVASY-----TNN-YVI-LRTAWVYSIFGS------NFLLSMLRLAKERREISVV--C-D------QF  179 (290)
Q Consensus       122 ~~Yg~sK~~~E~~v~~~-----~~~-~~I-lR~~~vyG~~~~------~~v~~~l~~~~~~~~i~~~--~-d------~~  179 (290)
T Consensus       158 N~YGySK~lFD~~v~~~~~~~~~~~~q~~GLrYFNVYGP~E~HKG~MASv~f~~~~q~~~~~~v~LF~~~~~~~~dGeQ~  237 (353)
T TIGR02197       158 NVYGYSKFLFDQYVRRRVLPGEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSHKEGFKDGEQL  237 (353)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             86122167898999998601247986424102113468886754436999999888997378820235668589887811


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCC---------CHHEEECCHHH
Q ss_conf             544522368999999998442024433443137623866678899999999999972798---------00057628588
Q gi|254780921|r  180 GTPTSALQIARAIIQIAHNLIENSDTSLRGIFHMTADGGPVSWADFAEYIFWESAERGGP---------YSKVYRIFTKQ  250 (290)
Q Consensus       180 ~~p~~v~D~a~~i~~~~~~~~~~~~~~~~Giyn~~~~~~~~s~~e~a~~I~~~~~~~~~~---------~~~i~~~~~~~  250 (290)
T Consensus       238 RDFVYV~DV~~~n~~~~~~------~~~SGifN~Gt-G~ArsF~dla~a~~~~~~~~~~~~LSl~~lv~~~~i~Yi~~Pe  310 (353)
T TIGR02197       238 RDFVYVKDVVKVNLWLLEN------PSKSGIFNVGT-GKARSFNDLADAVFKALGTNKGEPLSLKELVEDFKIEYIDMPE  310 (353)
T ss_pred             CCCEEHHHHHHHHHHHHHC------CCCCEEEECCC-CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCEECCCH
T ss_conf             0115527699999999848------89841564477-8886689999999998731468885779887306720102835


Q ss_pred             HCCCCCCCCCCCCCHHHHHHHHCCCCC-CHHHHHHHHHHHC
Q ss_conf             087689975110086899996178999-9899999999719
Q gi|254780921|r  251 YPTKAHRPAYSCLDCSKLANTHNIRIS-TWKEGVRNILVNI  290 (290)
Q Consensus       251 ~~~~a~RP~~~~Ld~~K~~~~lg~~~~-~~~e~i~~~i~~l  290 (290)
T Consensus       311 -~lrg~YQ~fTqAd~~~lr~aGy~~~~~~LeeGV~dY~~~~  350 (353)
T TIGR02197       311 -ALRGKYQYFTQADIDKLREAGYYKPFTTLEEGVKDYVQWL  350 (353)
T ss_pred             -HHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             -7400057401664899997327876734889999999998