HHsearch alignment for GI: 254780921 and conserved domain: TIGR02197
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase; InterPro: IPR011912 Lipopolysaccharides (LPS) are glycolipids that consitutes the outer monolayer of the outer membranes of most Gram-negative bacteria . They consist of lipid A (endotoxin) which anchors LPS to the outer membrane, a non-repeating core oligosachharide, and an immunogenic O-antigen repeat polymer, which is an oligosaccharide of 1-40 units that variesbetween different strains of bacteria. Although the O-antigen and most of the core domain are not necessary for growth in the lab, they appear to help bacteria resist environmental stresses including the complement system and antibiotics. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of LPS in Gram-negative bacteria . This enzyme is homologous to UDP-glucose 4-epimerase (IPR005886 from INTERPRO) and belongs to the NAD dependent epimerase/dehydratase family. It participates in the biosynthetic pathway leading to incorporation of heptose, a conserved sugar, into the core region of LPS, performing the reaction shown below: ADP-D-glycero-D-manno-heptose = ADP-L-glycero-D-manno-heptose It is a homopentameric enzyme with each monomer composed of two domains: an N-terminal modified Rossman fold domain for NADP binding, and a C-terminal substrate binding domain.; GO: 0008712 ADP-glyceromanno-heptose 6-epimerase activity, 0050661 NADP binding, 0005975 carbohydrate metabolic process.
Probab=100.00 E-value=0 Score=282.94 Aligned_cols=277 Identities=19% Similarity=0.248 Sum_probs=209.8
Q ss_pred EEEECCCCHHHHHHHHHHHCCC---EEEEECH--H-------------H------------CCCCC-HHHHHHHHHH---
Q ss_conf 9999788978899999996498---5999613--6-------------7------------08789-9999999975---
Q gi|254780921|r 3 CLVIGNNGQIAQSLSSMCVQDV---EIIRVGR--P-------------D------------IDLLK-PKDFASFFLS--- 48 (290)
Q Consensus 3 iLVtG~~G~iG~~l~~~l~~~~---~v~~~~r--~-------------~------------~D~~~-~~~~~~~l~~--- 48 (290)
T Consensus 1 IiVTGGAGFIGSNlv~~LN~~gP~~dI~vvD~L~~~~~F~ng~~~slg~~kk~~Nl~~~~I~d~i~k~~~~~~l~~~~~~ 80 (353)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGPETDILVVDNLRDDATFENGNPQSLGHFKKFLNLADLEIADYIDKDDLLDRLEKGSEA 80 (353)
T ss_pred CEECCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCC
T ss_conf 95506763689999999964389542888740787552467774322342443255541121335885469999830201
Q ss_pred -CCCCEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CC
Q ss_conf -59989997863445432233221024201222110001122333333445532111357554421111222------21
Q gi|254780921|r 49 -FSPDVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGIPCIYISTDYVFDGLSRTPIDEFSPTN------PL 121 (290)
Q Consensus 49 -~~pd~Vih~Aa~~~~~~~e~~~~~~~~~Nv~~~~~l~~~~~~~~~~~I~iSS~~Vy~g~~~~p~~E~d~~~------P~ 121 (290)
T Consensus 81 ~~~~~avfH~GAcS~--TTe~D~~~~m~nN~~ys~~Ll~~c~~~~~~~IYASSAatY-G~~~~~f~~~~~~e~L~kLrPl 157 (353)
T TIGR02197 81 LGKIEAVFHQGACSD--TTETDGEYMMENNYQYSKRLLDWCAEKGVPFIYASSAATY-GDGEAGFREDRELEELQKLRPL 157 (353)
T ss_pred CCCCCEEEECCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHC-CCCCCCCCCCCCHHHHHHCCCC
T ss_conf 388337997331253--5886279999889999999999999648986885031210-7687777766565889751878
Q ss_pred CCCHHHHHHHHHHHCCC-----CCC-CCC-CCCCCCEECCCC------CCCCEEECCCCCCCCEEEC--C-C------CC
Q ss_conf 11012456666531012-----223-223-555420003686------3200020112466521530--4-5------54
Q gi|254780921|r 122 NIYGKSKLAGEEKVASY-----TNN-YVI-LRTAWVYSIFGS------NFLLSMLRLAKERREISVV--C-D------QF 179 (290)
Q Consensus 122 ~~Yg~sK~~~E~~v~~~-----~~~-~~I-lR~~~vyG~~~~------~~v~~~l~~~~~~~~i~~~--~-d------~~ 179 (290)
T Consensus 158 N~YGySK~lFD~~v~~~~~~~~~~~~q~~GLrYFNVYGP~E~HKG~MASv~f~~~~q~~~~~~v~LF~~~~~~~~dGeQ~ 237 (353)
T TIGR02197 158 NVYGYSKFLFDQYVRRRVLPGEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSHKEGFKDGEQL 237 (353)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 86122167898999998601247986424102113468886754436999999888997378820235668589887811
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCC---------CHHEEECCHHH
Q ss_conf 544522368999999998442024433443137623866678899999999999972798---------00057628588
Q gi|254780921|r 180 GTPTSALQIARAIIQIAHNLIENSDTSLRGIFHMTADGGPVSWADFAEYIFWESAERGGP---------YSKVYRIFTKQ 250 (290)
Q Consensus 180 ~~p~~v~D~a~~i~~~~~~~~~~~~~~~~Giyn~~~~~~~~s~~e~a~~I~~~~~~~~~~---------~~~i~~~~~~~ 250 (290)
T Consensus 238 RDFVYV~DV~~~n~~~~~~------~~~SGifN~Gt-G~ArsF~dla~a~~~~~~~~~~~~LSl~~lv~~~~i~Yi~~Pe 310 (353)
T TIGR02197 238 RDFVYVKDVVKVNLWLLEN------PSKSGIFNVGT-GKARSFNDLADAVFKALGTNKGEPLSLKELVEDFKIEYIDMPE 310 (353)
T ss_pred CCCEEHHHHHHHHHHHHHC------CCCCEEEECCC-CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCEECCCH
T ss_conf 0115527699999999848------89841564477-8886689999999998731468885779887306720102835
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHCCCCC-CHHHHHHHHHHHC
Q ss_conf 087689975110086899996178999-9899999999719
Q gi|254780921|r 251 YPTKAHRPAYSCLDCSKLANTHNIRIS-TWKEGVRNILVNI 290 (290)
Q Consensus 251 ~~~~a~RP~~~~Ld~~K~~~~lg~~~~-~~~e~i~~~i~~l 290 (290)
T Consensus 311 -~lrg~YQ~fTqAd~~~lr~aGy~~~~~~LeeGV~dY~~~~ 350 (353)
T TIGR02197 311 -ALRGKYQYFTQADIDKLREAGYYKPFTTLEEGVKDYVQWL 350 (353)
T ss_pred -HHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf -7400057401664899997327876734889999999998