HHsearch alignment for GI: 254780921 and conserved domain: TIGR02632
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; InterPro: IPR013454 Rhamnose is a methyl-pentose sugar which is found as a constituent of pectin within the cell walls of dicotyledonous plants and has also been found in the mucilage of a number of legume plants . RhaD from Rhizobium leguminosarum bv. trifolii is encoded by a gene occurring in a rhamnose utilisation cluster, and is necessary for growth on this compound . This protein is predicted to be a bifunctional NAD-dependent aldolase/dehydrogenase..
Probab=98.78 E-value=2.3e-08 Score=66.27 Aligned_cols=126 Identities=16% Similarity=0.257 Sum_probs=91.0
Q ss_pred EEEECCCCHHHHHHHHHH-HCCCEEEEECHH-----------------------------------HCCCCCHHHHHHHH
Q ss_conf 999978897889999999-649859996136-----------------------------------70878999999999
Q gi|254780921|r 3 CLVIGNNGQIAQSLSSMC-VQDVEIIRVGRP-----------------------------------DIDLLKPKDFASFF 46 (290)
Q Consensus 3 iLVtG~~G~iG~~l~~~l-~~~~~v~~~~r~-----------------------------------~~D~~~~~~~~~~l 46 (290)
T Consensus 427 a~VtGGasGIG~~~A~rL~~eGAhvV~aD~d~~~a~~va~~~~~~fG~d~a~AGsdisaCGPaiGl~~DvT~e~~v~~~f 506 (709)
T TIGR02632 427 AFVTGGASGIGRETARRLVDEGAHVVLADLDAEAAEAVAAEIVDKFGADKAVAGSDISACGPAIGLKLDVTDEEAVKAAF 506 (709)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEECCCCHHCCCCCEEEEEEECCHHHHHHHH
T ss_conf 88973886526899999973697799962365789999999863138881211432000467100276317589999999
Q ss_pred HHC-----CCCEEEECCCCCC-CCC---C-CCCCCEEEEECCCCCCCCCCC------CCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 755-----9989997863445-432---2-332210242012221100011------2233333344553-211135755
Q gi|254780921|r 47 LSF-----SPDVIINPAAYTA-VDK---A-EDEPEIAFSINAEGAGAIAKA------ADSIGIPCIYIST-DYVFDGLSR 109 (290)
Q Consensus 47 ~~~-----~pd~Vih~Aa~~~-~~~---~-e~~~~~~~~~Nv~~~~~l~~~------~~~~~~~~I~iSS-~~Vy~g~~~ 109 (290)
T Consensus 507 ~~v~~~yGGvD~vv~nAGi~~S~p~~~t~r~~~W~l~~di~atG~FLVareA~r~~~~Q~lGG~~VfiaSkNav~A~kn~ 586 (709)
T TIGR02632 507 AEVALAYGGVDIVVNNAGIAVSSPLEETERLEEWDLNLDILATGYFLVAREAARLMRKQGLGGNIVFIASKNAVVAGKNA 586 (709)
T ss_pred HHHHHHHCCEEEEEECCCHHCCCCCHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCEEEEEECCCC
T ss_conf 99999749847876525301057702322155432012010120035888999999731798556776110001117884
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 4421111222211101245666653101222
Q gi|254780921|r 110 TPIDEFSPTNPLNIYGKSKLAGEEKVASYTN 140 (290)
Q Consensus 110 ~p~~E~d~~~P~~~Yg~sK~~~E~~v~~~~~ 140 (290)
T Consensus 587 ------------~AY~aaKA~~~Hl~R~LA~ 605 (709)
T TIGR02632 587 ------------SAYSAAKAAEAHLARCLAA 605 (709)
T ss_pred ------------CHHHHHHHHHHHHHHHHHH
T ss_conf ------------0555899999989999998