HHsearch alignment for GI: 254780921 and conserved domain: TIGR03589
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=100.00 E-value=2.2e-38 Score=235.30 Aligned_cols=204 Identities=22% Similarity=0.294 Sum_probs=163.0
Q ss_pred EEEEECCCCHHHHHHHHHHHCC---CEEEEECHHH-------------------CCCCCHHHHHHHHHHCCCCEEEECCC
Q ss_conf 4999978897889999999649---8599961367-------------------08789999999997559989997863
Q gi|254780921|r 2 KCLVIGNNGQIAQSLSSMCVQD---VEIIRVGRPD-------------------IDLLKPKDFASFFLSFSPDVIINPAA 59 (290)
Q Consensus 2 kiLVtG~~G~iG~~l~~~l~~~---~~v~~~~r~~-------------------~D~~~~~~~~~~l~~~~pd~Vih~Aa 59 (290)
T Consensus 6 ~ILVTGGaGfIGS~lv~~Ll~~~~~~~iii~~~de~~~~~l~~~~~~~~i~f~~gDIrD~~~l~~~~~~--vD~VfHaAA 83 (324)
T TIGR03589 6 SILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRG--VDYVVHAAA 83 (324)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEECCC
T ss_conf 999907977999999999997299828999668640328898516898759996777788999976348--889999462
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 4454322332210242012221100011223333-334455321113575544211112222111012456666531012
Q gi|254780921|r 60 YTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGI-PCIYISTDYVFDGLSRTPIDEFSPTNPLNIYGKSKLAGEEKVASY 138 (290)
Q Consensus 60 ~~~~~~~e~~~~~~~~~Nv~~~~~l~~~~~~~~~-~~I~iSS~~Vy~g~~~~p~~E~d~~~P~~~Yg~sK~~~E~~v~~~ 138 (290)
T Consensus 84 ~khVp~se~nP~e~i~tNV~Gt~nlleaa~~~~Vkk~V~iSTDka--------------~~P~n~yGasK~~~E~l~~~~ 149 (324)
T TIGR03589 84 LKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKA--------------ANPINLYGATKLASDKLFVAA 149 (324)
T ss_pred CCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC--------------CCCCCCCCCCHHHHHHHHHHH
T ss_conf 776726776989999999799999999988555431786226888--------------899674312367679999999
Q ss_pred ---C----CCCCCCCCCCCEECCCCCCCCEEECCCCCC-CCEEEC-CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf ---2----232235554200036863200020112466-521530-4554544522368999999998442024433443
Q gi|254780921|r 139 ---T----NNYVILRTAWVYSIFGSNFLLSMLRLAKER-REISVV-CDQFGTPTSALQIARAIIQIAHNLIENSDTSLRG 209 (290)
Q Consensus 139 ---~----~~~~IlR~~~vyG~~~~~~v~~~l~~~~~~-~~i~~~-~d~~~~p~~v~D~a~~i~~~~~~~~~~~~~~~~G 209 (290)
T Consensus 150 ~~~~~~~~~~~~~vRygNV~gsrgS-ViP~F~~qi~~g~~~~~itd~~mtRf~mtv~dav~lV~~a~~~~~~GE------ 222 (324)
T TIGR03589 150 NNISGSKGTRFSVVRYGNVVGSRGS-VVPFFKSLKEEGVTELPITDPRMTRFWITLEQGVNFVLKSLERMLGGE------ 222 (324)
T ss_pred HHHHCCCCCEEEEEEECCCCCCCCC-CHHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCE------
T ss_conf 9850788863788633275188866-399999999839997444999807998889999999999998288984------
Q ss_pred CEEEECCCCCCCHHHHHHHHH
Q ss_conf 137623866678899999999
Q gi|254780921|r 210 IFHMTADGGPVSWADFAEYIF 230 (290)
Q Consensus 210 iyn~~~~~~~~s~~e~a~~I~ 230 (290)
T Consensus 223 ifv--~k~~s~~i~dla~~~~ 241 (324)
T TIGR03589 223 IFV--PKIPSMKITDLAEAMA 241 (324)
T ss_pred EEE--CCCCCCHHHHHHHHHH
T ss_conf 998--3697025999999860