HHsearch alignment for GI: 254780921 and conserved domain: cd01493
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=94.50 E-value=0.06 Score=30.17 Aligned_cols=104 Identities=13% Similarity=0.190 Sum_probs=57.0
Q ss_pred CEEEEECCCCHHHHHHHHHH-HCCC-EEEEECHH--------------HCCCCC--HHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 94999978897889999999-6498-59996136--------------708789--999999997559989997863445
Q gi|254780921|r 1 MKCLVIGNNGQIAQSLSSMC-VQDV-EIIRVGRP--------------DIDLLK--PKDFASFFLSFSPDVIINPAAYTA 62 (290)
Q Consensus 1 MkiLVtG~~G~iG~~l~~~l-~~~~-~v~~~~r~--------------~~D~~~--~~~~~~~l~~~~pd~Vih~Aa~~~ 62 (290)
T Consensus 21 s~VLiiG~~g-lG~EiaKNLvLaGV~svti~D~~~v~~~DLg~nFfl~~~diGk~Raea~~~~L~eLNp~V~v~~~~~~~ 99 (425)
T cd01493 21 AHVCLLNATA-TGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEESP 99 (425)
T ss_pred CCEEEECCCH-HHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf 9399999971-199999872132897699995991878885766156677858839999999999847868547870687
Q ss_pred CCCCCCCC------CEEEEECC--CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43223322------10242012--221100011223333334455321113
Q gi|254780921|r 63 VDKAEDEP------EIAFSINA--EGAGAIAKAADSIGIPCIYISTDYVFD 105 (290)
Q Consensus 63 ~~~~e~~~------~~~~~~Nv--~~~~~l~~~~~~~~~~~I~iSS~~Vy~ 105 (290)
T Consensus 100 ~~~~~~~~~~~~~f~vVV~t~~~~~~~~~in~~cr~~~i~fI~~~~~Gl~G 150 (425)
T cd01493 100 EALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYG 150 (425)
T ss_pred HHHHHCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEECCEE
T ss_conf 886426876752833899828899999999999998699789998244669