HHsearch alignment for GI: 254780921 and conserved domain: cd05293
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.24 E-value=0.13 Score=28.31 Aligned_cols=93 Identities=17% Similarity=0.158 Sum_probs=55.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHC-C--CEEEEECHHH-------CCCCCHH------------HHHHHHHHCCCCEEEECC
Q ss_conf 9499997889788999999964-9--8599961367-------0878999------------999999755998999786
Q gi|254780921|r 1 MKCLVIGNNGQIAQSLSSMCVQ-D--VEIIRVGRPD-------IDLLKPK------------DFASFFLSFSPDVIINPA 58 (290)
Q Consensus 1 MkiLVtG~~G~iG~~l~~~l~~-~--~~v~~~~r~~-------~D~~~~~------------~~~~~l~~~~pd~Vih~A 58 (290)
T Consensus 4 ~Kv~IIGa-G~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~h~~~~~~~~~v~~~~d~~-~~~--~aDvVVitA 79 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTA--NSKVVIVTA 79 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCHH-HHC--CCCEEEECC
T ss_conf 86999897-88899999999966998879999388983326888866040127985599379999-968--999999889
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCCCC
Q ss_conf 34454322332210242012221100011223333--334455
Q gi|254780921|r 59 AYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGI--PCIYIS 99 (290)
Q Consensus 59 a~~~~~~~e~~~~~~~~~Nv~~~~~l~~~~~~~~~--~~I~iS 99 (290)
T Consensus 80 G~~~k~--g~~R~dLl~~N~~I~~~i~~~i~~~~p~~ivivvs 120 (312)
T cd05293 80 GARQNE--GESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS 120 (312)
T ss_pred CCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 999998--98889999988999999999988419984699668