HHsearch alignment for GI: 254780921 and conserved domain: pfam00899
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=94.31 E-value=0.11 Score=28.82 Aligned_cols=97 Identities=20% Similarity=0.274 Sum_probs=49.1
Q ss_pred EEEEECCCCHHHHHHHHHHHC-CC-EEEEECHHHC--------------CC--CCHHHHHHHHHHCCCCEEEECC--CCC
Q ss_conf 499997889788999999964-98-5999613670--------------87--8999999999755998999786--344
Q gi|254780921|r 2 KCLVIGNNGQIAQSLSSMCVQ-DV-EIIRVGRPDI--------------DL--LKPKDFASFFLSFSPDVIINPA--AYT 61 (290)
Q Consensus 2 kiLVtG~~G~iG~~l~~~l~~-~~-~v~~~~r~~~--------------D~--~~~~~~~~~l~~~~pd~Vih~A--a~~ 61 (290)
T Consensus 3 kVlivG~-GglG~~~~~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i~ 81 (134)
T pfam00899 3 RVLVVGA-GGLGSPAAEYLARAGVGKLTLVDFDTVELSNLNRQILFTESDIGKPKAEVAKERLRAINPDVEVEAYPERLT 81 (134)
T ss_pred EEEEECC-CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEECCHHHCCCEEHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 8999898-889999999999938974999989567632227224233646688107999999997789958999925679
Q ss_pred CCCCCC---CCCCEEE--EECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 543223---3221024--20122211000112233333344553
Q gi|254780921|r 62 AVDKAE---DEPEIAF--SINAEGAGAIAKAADSIGIPCIYIST 100 (290)
Q Consensus 62 ~~~~~e---~~~~~~~--~~Nv~~~~~l~~~~~~~~~~~I~iSS 100 (290)
T Consensus 82 ~-~~~~~~~~~~DvVi~~~Dn~~~r~~ln~~c~~~~ip~i~~~~ 124 (134)
T pfam00899 82 P-ENLEELLKGADLVVDALDNFAARYLLNDACVKRGIPLISAGA 124 (134)
T ss_pred H-HHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 7-787642644889999989999999999999985998999554