HHsearch alignment for GI: 254780921 and conserved domain: smart00859

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=92.12  E-value=0.13  Score=28.35  Aligned_cols=89  Identities=17%  Similarity=0.283  Sum_probs=45.1

Q ss_pred             EEEEECCCCHHHHHHHHHHHC--CCEEEEE--CHHHC--C-------CCC---HHHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf             499997889788999999964--9859996--13670--8-------789---999999997559989997863445432
Q gi|254780921|r    2 KCLVIGNNGQIAQSLSSMCVQ--DVEIIRV--GRPDI--D-------LLK---PKDFASFFLSFSPDVIINPAAYTAVDK   65 (290)
Q Consensus         2 kiLVtG~~G~iG~~l~~~l~~--~~~v~~~--~r~~~--D-------~~~---~~~~~~~l~~~~pd~Vih~Aa~~~~~~   65 (290)
T Consensus         1 kVaIvGatGyvG~eli~lL~~hp~~~~~~l~as~~~~G~~i~~~~~~l~~~~~~~~~~~~~~~~~~Dvvf~a~p~~---~   77 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHG---V   77 (122)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCEEEECCCCH---H
T ss_conf             9899894519999999999858997457777404658975788596645773505653311001799999938827---8


Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2332210242012221100011223333334455321113
Q gi|254780921|r   66 AEDEPEIAFSINAEGAGAIAKAADSIGIPCIYISTDYVFD  105 (290)
Q Consensus        66 ~e~~~~~~~~~Nv~~~~~l~~~~~~~~~~~I~iSS~~Vy~  105 (290)
T Consensus        78 s~~------------~~~~~~~~~~~g~~VIDlSadfRl~  105 (122)
T smart00859       78 SKE------------IAPLLPKAAEAGVKVIDLSSAFRMD  105 (122)
T ss_pred             HHH------------HHHHHHHHHHCCCEEEECCHHHCCC
T ss_conf             899------------9998898875698798684775278