HHsearch alignment for GI: 254780922 and conserved domain: COG1208
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=353.06 Aligned_cols=233 Identities=33% Similarity=0.568 Sum_probs=205.2
Q ss_pred CEEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 90799248887455334438982222478374799999999978986899997776564311122222222111122233
Q gi|254780922|r 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQ 80 (292)
Q Consensus 1 MkaiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q 80 (292)
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~-~~i~~~~~d~~~~~~~I~y~~e 80 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLG-EQIEEYFGDGEGLGVRITYVVE 80 (358)
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCEECCEEHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHHCCCCCCCEEEEEC
T ss_conf 359999466566635544899744657998645999999999879978999877468-9999998626356986599716
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCC-CCHHHCCC
Q ss_conf 33224468521011123356752132144321111000011100000111001222210001222122221-00010013
Q gi|254780922|r 81 LVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSS-NQAISIEE 159 (292)
Q Consensus 81 ~~p~Gta~Ai~~a~~~i~~~~~~lilgDni~~~~~l~~~l~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~-~~i~~i~E 159 (292)
T Consensus 81 ~~~lGTag~l~~a~~~l~~~~f~v~~GDv-~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~~~~v~~f~e 159 (358)
T COG1208 81 KEPLGTAGALKNALDLLGGDDFLVLNGDV-LTDLDLSELLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEFRE 159 (358)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCC-CCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEEE
T ss_conf 87666489999998860799789997886-22468899999987356642799875277655863997599848988997
Q ss_pred CCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 333--322222202455410002243220046753333333432000001320463135412563278457799999999
Q gi|254780922|r 160 KPN--NPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFV 237 (292)
Q Consensus 160 KP~--~~~sn~a~~GiY~f~~~i~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~Gt~e~l~~As~~i 237 (292)
T Consensus 160 kp~~~~~~~~~in~Giyi~~~~v~~~i~~~~~~~---~~~-~~~~~l~~~~~~v~~~~~~g-~W~dig~p~d~~~a~~~~ 234 (358)
T COG1208 160 KPGPEEPPSNLINAGIYIFDPEVFDYIEKGERFD---FEE-ELLPALAAKGEDVYGYVFEG-YWLDIGTPEDLLEANELL 234 (358)
T ss_pred CCCCCCCCCCEEEEEEEEECHHHHCCCCCCCCCC---CHH-HHHHHHHHCCCCEEEEEECC-EEEECCCHHHHHHHHHHH
T ss_conf 2667678886699999998978943013357432---147-78999987699569997578-799699989999999999
Q ss_pred HHH
Q ss_conf 998
Q gi|254780922|r 238 RNI 240 (292)
Q Consensus 238 ~~~ 240 (292)
T Consensus 235 ~~~ 237 (358)
T COG1208 235 LRG 237 (358)
T ss_pred HHH
T ss_conf 851