HHsearch alignment for GI: 254780922 and conserved domain: COG1212

>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane].
Probab=98.80  E-value=1.1e-08  Score=74.62  Aligned_cols=222  Identities=18%  Similarity=0.265  Sum_probs=131.3

Q ss_pred             EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             79924888745533443898222247837479999999997898689999777656431112222222211112223333
Q gi|254780922|r    3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQLV   82 (292)
Q Consensus         3 aiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~~   82 (292)
T Consensus         6 viIPAR~~STRLp------gKPLadI~GkpmI~rV~e~a~~s~~~rvvVATD--de~I~~av----~~~G~~avmT~~~h   73 (247)
T COG1212           6 VIIPARLASTRLP------GKPLADIGGKPMIVRVAERALKSGADRVVVATD--DERIAEAV----QAFGGEAVMTSKDH   73 (247)
T ss_pred             EEEECCHHCCCCC------CCCHHHHCCCHHHHHHHHHHHHCCCCEEEEECC--CHHHHHHH----HHHCCEEEECCCCC
T ss_conf             9985420026689------973577379607899999998737872899749--88999999----97097899617888


Q ss_pred             CCCCCCCCCCCCCC-CCCCCCCE-EECCCCCCCCC-CCCHHHHHCCCHHHHHCCCCCCCCCCC-C--CC--CCCCCCCCH
Q ss_conf             22446852101112-33567521-32144321111-000011100000111001222210001-2--22--122221000
Q gi|254780922|r   83 PAGLAQSYILGAEF-IGDSSSVL-ILGDNVFYGSD-ISDIFHKARARRNSATVVGCHVQNPQR-Y--GV--VEVDSSNQA  154 (292)
Q Consensus        83 p~Gta~Ai~~a~~~-i~~~~~~l-ilgDni~~~~~-l~~~l~~~~~~~~~~ti~~~~v~~p~~-y--Gv--v~~d~~~~i  154 (292)
T Consensus        74 ~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~A  153 (247)
T COG1212          74 QSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKEGYA  153 (247)
T ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHCCCCCEEEEECCCCCE
T ss_conf             98008999999965999642999865887777979999999998737766045534337888845998279997599828


Q ss_pred             HHCCCCCC----C---CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH--HCCCCCEEEEECCCCEEEECCC
Q ss_conf             10013333----3---2222220245541000224322004675333333343200--0001320463135412563278
Q gi|254780922|r  155 ISIEEKPN----N---PKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSY--YLDKGLLAVEFLREGSAWFDAG  225 (292)
Q Consensus       155 ~~i~EKP~----~---~~sn~a~~GiY~f~~~i~~~~~~l~~s~rgE~eitD~~~~--~l~~~~~~~~~~~~g~~W~D~G  225 (292)
T Consensus       154 LYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~---LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVD  230 (247)
T COG1212         154 LYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSP---LEKIESLEQLRVLENGEKIHVEIVKEVPSIGVD  230 (247)
T ss_pred             EEEECCCCCCCCCCCCCCCHHHEEEHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
T ss_conf             99876878775434677643642205886799999997069960---567877899999876975789984168888989


Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             45779999999999
Q gi|254780922|r  226 TPESLLDTAVFVRN  239 (292)
Q Consensus       226 t~e~l~~As~~i~~  239 (292)
T Consensus       231 T~EDLe~v~~~~~~  244 (247)
T COG1212         231 TPEDLERVRKILSN  244 (247)
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             88999999999875