HHsearch alignment for GI: 254780922 and conserved domain: COG1212
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane].
Probab=98.80 E-value=1.1e-08 Score=74.62 Aligned_cols=222 Identities=18% Similarity=0.265 Sum_probs=131.3
Q ss_pred EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79924888745533443898222247837479999999997898689999777656431112222222211112223333
Q gi|254780922|r 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQLV 82 (292)
Q Consensus 3 aiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~~ 82 (292)
T Consensus 6 viIPAR~~STRLp------gKPLadI~GkpmI~rV~e~a~~s~~~rvvVATD--de~I~~av----~~~G~~avmT~~~h 73 (247)
T COG1212 6 VIIPARLASTRLP------GKPLADIGGKPMIVRVAERALKSGADRVVVATD--DERIAEAV----QAFGGEAVMTSKDH 73 (247)
T ss_pred EEEECCHHCCCCC------CCCHHHHCCCHHHHHHHHHHHHCCCCEEEEECC--CHHHHHHH----HHHCCEEEECCCCC
T ss_conf 9985420026689------973577379607899999998737872899749--88999999----97097899617888
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCE-EECCCCCCCCC-CCCHHHHHCCCHHHHHCCCCCCCCCCC-C--CC--CCCCCCCCH
Q ss_conf 22446852101112-33567521-32144321111-000011100000111001222210001-2--22--122221000
Q gi|254780922|r 83 PAGLAQSYILGAEF-IGDSSSVL-ILGDNVFYGSD-ISDIFHKARARRNSATVVGCHVQNPQR-Y--GV--VEVDSSNQA 154 (292)
Q Consensus 83 p~Gta~Ai~~a~~~-i~~~~~~l-ilgDni~~~~~-l~~~l~~~~~~~~~~ti~~~~v~~p~~-y--Gv--v~~d~~~~i 154 (292)
T Consensus 74 ~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~A 153 (247)
T COG1212 74 QSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKEGYA 153 (247)
T ss_pred CCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHCCCCCEEEEECCCCCE
T ss_conf 98008999999965999642999865887777979999999998737766045534337888845998279997599828
Q ss_pred HHCCCCCC----C---CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH--HCCCCCEEEEECCCCEEEECCC
Q ss_conf 10013333----3---2222220245541000224322004675333333343200--0001320463135412563278
Q gi|254780922|r 155 ISIEEKPN----N---PKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSY--YLDKGLLAVEFLREGSAWFDAG 225 (292)
Q Consensus 155 ~~i~EKP~----~---~~sn~a~~GiY~f~~~i~~~~~~l~~s~rgE~eitD~~~~--~l~~~~~~~~~~~~g~~W~D~G 225 (292)
T Consensus 154 LYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~---LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVD 230 (247)
T COG1212 154 LYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSP---LEKIESLEQLRVLENGEKIHVEIVKEVPSIGVD 230 (247)
T ss_pred EEEECCCCCCCCCCCCCCCHHHEEEHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
T ss_conf 99876878775434677643642205886799999997069960---567877899999876975789984168888989
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 45779999999999
Q gi|254780922|r 226 TPESLLDTAVFVRN 239 (292)
Q Consensus 226 t~e~l~~As~~i~~ 239 (292)
T Consensus 231 T~EDLe~v~~~~~~ 244 (247)
T COG1212 231 TPEDLERVRKILSN 244 (247)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 88999999999875