HHsearch alignment for GI: 254780922 and conserved domain: COG1861
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane].
Probab=97.72 E-value=1.6e-05 Score=54.86 Aligned_cols=119 Identities=18% Similarity=0.305 Sum_probs=77.0
Q ss_pred CEEEEECCCCC-CCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 90799248887-4553344389822224783747999999999789-868999977765643111222222221111222
Q gi|254780922|r 1 MKGIVLAGGSG-TRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVLKEFLGSGEKWGVQFSYI 78 (292)
Q Consensus 1 MkaiIlAaG~G-tRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~G-i~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~ 78 (292)
T Consensus 3 ~I~~IiQARmgStRLp------gKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~--~l~~~~~~~G~~---v 71 (241)
T COG1861 3 MILVIIQARMGSTRLP------GKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDD--ALEEVCRSHGFY---V 71 (241)
T ss_pred CEEEEEEECCCCCCCC------CCHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHH--HHHHHHHHCCEE---E
T ss_conf 4798853002676578------6133330787419999999860433243589734772045--799999970824---7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CHHHHHCCCHHHH
Q ss_conf 333322446852101112335675213214432111100-0011100000111
Q gi|254780922|r 79 EQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDIS-DIFHKARARRNSA 130 (292)
Q Consensus 79 ~q~~p~Gta~Ai~~a~~~i~~~~~~lilgDni~~~~~l~-~~l~~~~~~~~~~ 130 (292)
T Consensus 72 frGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 72 FRGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred ECCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 63888999999999997358876999608998778899999999998659860