HHsearch alignment for GI: 254780922 and conserved domain: PRK05450
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.
Probab=99.34 E-value=1.6e-12 Score=98.66 Aligned_cols=224 Identities=20% Similarity=0.269 Sum_probs=133.4
Q ss_pred CE--EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 90--799248887455334438982222478374799999999978-986899997776564311122222222111122
Q gi|254780922|r 1 MK--GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDA-GIREILIISTPRDLPVLKEFLGSGEKWGVQFSY 77 (292)
Q Consensus 1 Mk--aiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~-Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y 77 (292)
T Consensus 1 Mk~~~iIPAR~~SsR~P------gKpL~~I~GkpmI~~v~~~a~~~~~~~~V~VATd--d~~I~-~~~---~~~g~~~im 68 (248)
T PRK05450 1 MKFVVIIPARYASTRLP------GKPLADIGGKPMIVRVYERASKASGADRVVVATD--DERIA-DAV---EAFGGEVVM 68 (248)
T ss_pred CCEEEEEECCCCCCCCC------CCCCHHHCCCCHHHHHHHHHHHCCCCCEEEEEEC--CHHHH-HHH---HCCCCCEEE
T ss_conf 97799980797787899------8620241896989999999996689882999708--85244-353---156862340
Q ss_pred CCCCCCCCCCCCCCCCCCCCC--CCCCCE-EECCCCCCCC-CCCCHHHHHCCCHH-HHHCCCCCCCCCCCC---C--CCC
Q ss_conf 233332244685210111233--567521-3214432111-10000111000001-110012222100012---2--212
Q gi|254780922|r 78 IEQLVPAGLAQSYILGAEFIG--DSSSVL-ILGDNVFYGS-DISDIFHKARARRN-SATVVGCHVQNPQRY---G--VVE 147 (292)
Q Consensus 78 ~~q~~p~Gta~Ai~~a~~~i~--~~~~~l-ilgDni~~~~-~l~~~l~~~~~~~~-~~ti~~~~v~~p~~y---G--vv~ 147 (292)
T Consensus 69 Ts~~h~~GTd-Ri~Ea~~~l~~~~~d~IInvQGDEPli~p~~I~~li~~~~~~~~~~i~tl~~~~~~~~~~~d~n~VKvv 147 (248)
T PRK05450 69 TSADHPSGTD-RIAEAAAKLGLSDDDIVVNVQGDEPLIPPELIDQVAEPLAAHPEADMATLAVPIDDEEELFNPNVVKVV 147 (248)
T ss_pred CCCCCCCCHH-HHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHCCCCEEEE
T ss_conf 4645477038-999999850877786899935986778999999999999858866399999862888996088834899
Q ss_pred CCCCCCHHHCCCCCC---------CCCC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCEEEEECCC
Q ss_conf 222100010013333---------3222-222024554100022432200467533333334320000013204631354
Q gi|254780922|r 148 VDSSNQAISIEEKPN---------NPKS-SFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLRE 217 (292)
Q Consensus 148 ~d~~~~i~~i~EKP~---------~~~s-n~a~~GiY~f~~~i~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~ 217 (292)
T Consensus 148 ~~~~~~alyfSRs~IP~~~~~~~~~~~~~~~~hiGiy~f~~~~L~~f~~l~~s~lE~~E~lEqLR-~leng~~I~~~~~~ 226 (248)
T PRK05450 148 LDKNGYALYFSRAPIPWGRDAADPTAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEQIESLEQLR-ALENGYRIHVAVVD 226 (248)
T ss_pred ECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHCCCCEEEEEEC
T ss_conf 89999840554267875444321235555168999886009999998746998146565269999-99859957999967
Q ss_pred CEEEECCCCHHHHHHHHHHHH
Q ss_conf 125632784577999999999
Q gi|254780922|r 218 GSAWFDAGTPESLLDTAVFVR 238 (292)
Q Consensus 218 g~~W~D~Gt~e~l~~As~~i~ 238 (292)
T Consensus 227 ~~~~~~VDT~eDl~~v~~~lk 247 (248)
T PRK05450 227 EAPSPGVDTPEDLERVRALLA 247 (248)
T ss_pred CCCCCCCCCHHHHHHHHHHHC
T ss_conf 899999779999999999866