HHsearch alignment for GI: 254780922 and conserved domain: PRK09382
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional.
Probab=99.15 E-value=1.2e-10 Score=86.97 Aligned_cols=196 Identities=17% Similarity=0.222 Sum_probs=111.2
Q ss_pred EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7992488874553344389822224783747999999999789-868999977765643111222222221111222333
Q gi|254780922|r 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQL 81 (292)
Q Consensus 3 aiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~G-i~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~ 81 (292)
T Consensus 9 aIIlAAG~G~Rfg~-~~~ipKQf~~l~gkpil~~sl~~f~~~~~i~~Ivvvv~~~~~~~~~~~~~-------~i~~V~-- 78 (382)
T PRK09382 9 LVIVAAGRSTRFGQ-SAEVKKQWLRIGGKPLWLHVLENFSSAPDFKEIVVVIHPDDIAYMKRAVP-------EIKFVT-- 78 (382)
T ss_pred EEEECCCCCCCCCC-CCCCCCCEEEECCEEHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHCC-------CCEEEC--
T ss_conf 99968722504899-87999741067977899999999966899898999938889999997457-------957937--
Q ss_pred CCCCC--CCCCCCCCCCCCCCCCCEEEC-CCCCCCCC-CCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 32244--685210111233567521321-44321111-000011100000111001222210001222122221000100
Q gi|254780922|r 82 VPAGL--AQSYILGAEFIGDSSSVLILG-DNVFYGSD-ISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISI 157 (292)
Q Consensus 82 ~p~Gt--a~Ai~~a~~~i~~~~~~lilg-Dni~~~~~-l~~~l~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~~~i~~i 157 (292)
T Consensus 79 --GG~tRq~SV~ngL~~i~~-~~VlIHDaARP~vs~~lI~~li~~~~--~~~a~ip~lpv~DTik~~----~~------- 142 (382)
T PRK09382 79 --GGATRQESVRNALEALDS-EYVLISDAARPFVPKELIDRLIEALD--KADCVLPALPVADTLKRA----NE------- 142 (382)
T ss_pred --CCHHHHHHHHHHHHHCCC-CEEEEECCCCCCCCHHHHHHHHHHHC--CCCCCEEEEECCCCEEEC----CC-------
T ss_conf --850599999999975678-88999554257899999999998651--477615875243350104----66-------
Q ss_pred CCCCCCCCCCCCHHHHH-HHHHHHHHH------HHHCCCCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECCCCHHHH
Q ss_conf 13333322222202455-410002243------22004675333333343200000132046313541256327845779
Q gi|254780922|r 158 EEKPNNPKSSFAVTGIY-FYDQEVVNI------ARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESL 230 (292)
Q Consensus 158 ~EKP~~~~sn~a~~GiY-~f~~~i~~~------~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~Gt~e~l 230 (292)
T Consensus 143 --t--vdR~~-----l~~~QTPQ~F~~~~L~~a~~~a~---~~~~~~TDDasl~e~~G~~V~~V~G~~-~N~KITtpeDL 209 (382)
T PRK09382 143 --T--VDREG-----LKLIQTPQLSRTKTLLAAHRKAL---SGRTDFTDDSSIAEAAGGKVALVEGSE-DLHKLTFKEDL 209 (382)
T ss_pred --C--CCHHH-----CEEECCCCCCCHHHHHHHHHHHH---HCCCCCCCHHHHHHHCCCCEEEEECCC-CCCCCCCHHHH
T ss_conf --4--68678-----45622775355999999999998---639986740999998699279995675-48538999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780922|r 231 LDTAVFV 237 (292)
Q Consensus 231 ~~As~~i 237 (292)
T Consensus 210 ~~~~~~~ 216 (382)
T PRK09382 210 KALDRLS 216 (382)
T ss_pred HHHHHHH
T ss_conf 9998644