HHsearch alignment for GI: 254780922 and conserved domain: TIGR01208
>TIGR01208 rmlA_long glucose-1-phosphate thymidylyltransferase; InterPro: IPR005908 Synonym: dTDP-D-glucose synthase This group of proteins comprises a tightly conserved but broadly distributed subfamily of known and putative bacterial glucose-1-phosphate thymidylyltransferases (2.7.7.24 from EC). It is well characterised in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. dTTP + alpha-D-glucose 1-phosphate = diphosphate + dTDP-glucose The family of known and putative glucose-1-phosphate thymidyltransferases shows a deep split into a short form (see IPR005907 from INTERPRO) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. The long form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. .
Probab=100.00 E-value=0 Score=518.85 Aligned_cols=236 Identities=37% Similarity=0.671 Sum_probs=226.3
Q ss_pred EEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 07992488874553344389822224783747999999999789868999977765643111222222221111222333
Q gi|254780922|r 2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQL 81 (292)
Q Consensus 2 kaiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~ 81 (292)
T Consensus 1 KaliL~aG~GTRLRPLTFt~pK~LiPvAnKPi~~Yaie~~~~AGI~diGIvvg~~~~e~i~~~~g~g~~fg~kityI~Q~ 80 (361)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLIEAGITDIGIVVGPETGEEIKEIVGEGERFGAKITYIVQG 80 (361)
T ss_pred CCEECCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHEEEECCCCCCCEEEEEEECC
T ss_conf 92442587867677766578843066168732367688887469769999846988212202324883023289898227
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC-HHHCCC
Q ss_conf 322446852101112-335675213214432111100001110000011100122221000122212222100-010013
Q gi|254780922|r 82 VPAGLAQSYILGAEF-IGDSSSVLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQ-AISIEE 159 (292)
Q Consensus 82 ~p~Gta~Ai~~a~~~-i~~~~~~lilgDni~~~~~l~~~l~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~~~-i~~i~E 159 (292)
T Consensus 81 ~plGlAHAv~~A~~fGlgd~~FvvYLGDNl~-~~gi~~fv~~F~~~~~da~ILL~~V~dP~~FGVA~l~d~G~~i~~LvE 159 (361)
T TIGR01208 81 EPLGLAHAVYVARDFGLGDEDFVVYLGDNLI-QDGIKRFVKSFEEKDYDALILLKKVEDPTAFGVAELEDDGKRILKLVE 159 (361)
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEECCCCHH-HHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEECCCCEEEEEEE
T ss_conf 8760467645788847899860797374210-423789988533148003011043887884555899248979999883
Q ss_pred CCCCCCCCCCHHHHHHHHH--HHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 3333222222024554100--02243220046753333333432000001320463135412563278457799999999
Q gi|254780922|r 160 KPNNPKSSFAVTGIYFYDQ--EVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFV 237 (292)
Q Consensus 160 KP~~~~sn~a~~GiY~f~~--~i~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~Gt~e~l~~As~~i 237 (292)
T Consensus 160 KPk~PPSNLAvvGlY~F~pPe~if~~~~~~kPSwRGElEITD~IQ~lIe~Gy~V~~~~v~G-WWkDTGk~eDLL~AN~~i 238 (361)
T TIGR01208 160 KPKEPPSNLAVVGLYMFRPPELIFEAIKNIKPSWRGELEITDAIQYLIEKGYKVGGSKVKG-WWKDTGKPEDLLDANRLI 238 (361)
T ss_pred CCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEE-EECCCCCCHHHHHHHHHH
T ss_conf 3865787701233453387779888985288877662157757756531583777799978-870159802389999997
Q ss_pred HH
Q ss_conf 99
Q gi|254780922|r 238 RN 239 (292)
Q Consensus 238 ~~ 239 (292)
T Consensus 239 Ld 240 (361)
T TIGR01208 239 LD 240 (361)
T ss_pred HH
T ss_conf 44