HHsearch alignment for GI: 254780922 and conserved domain: TIGR01208

>TIGR01208 rmlA_long glucose-1-phosphate thymidylyltransferase; InterPro: IPR005908 Synonym: dTDP-D-glucose synthase This group of proteins comprises a tightly conserved but broadly distributed subfamily of known and putative bacterial glucose-1-phosphate thymidylyltransferases (2.7.7.24 from EC). It is well characterised in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. dTTP + alpha-D-glucose 1-phosphate = diphosphate + dTDP-glucose The family of known and putative glucose-1-phosphate thymidyltransferases shows a deep split into a short form (see IPR005907 from INTERPRO) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. The long form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. .
Probab=100.00  E-value=0  Score=518.85  Aligned_cols=236  Identities=37%  Similarity=0.671  Sum_probs=226.3

Q ss_pred             EEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             07992488874553344389822224783747999999999789868999977765643111222222221111222333
Q gi|254780922|r    2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQL   81 (292)
Q Consensus         2 kaiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~   81 (292)
T Consensus         1 KaliL~aG~GTRLRPLTFt~pK~LiPvAnKPi~~Yaie~~~~AGI~diGIvvg~~~~e~i~~~~g~g~~fg~kityI~Q~   80 (361)
T TIGR01208         1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLIEAGITDIGIVVGPETGEEIKEIVGEGERFGAKITYIVQG   80 (361)
T ss_pred             CCEECCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHEEEECCCCCCCEEEEEEECC
T ss_conf             92442587867677766578843066168732367688887469769999846988212202324883023289898227


Q ss_pred             CCCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC-HHHCCC
Q ss_conf             322446852101112-335675213214432111100001110000011100122221000122212222100-010013
Q gi|254780922|r   82 VPAGLAQSYILGAEF-IGDSSSVLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQ-AISIEE  159 (292)
Q Consensus        82 ~p~Gta~Ai~~a~~~-i~~~~~~lilgDni~~~~~l~~~l~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~~~-i~~i~E  159 (292)
T Consensus        81 ~plGlAHAv~~A~~fGlgd~~FvvYLGDNl~-~~gi~~fv~~F~~~~~da~ILL~~V~dP~~FGVA~l~d~G~~i~~LvE  159 (361)
T TIGR01208        81 EPLGLAHAVYVARDFGLGDEDFVVYLGDNLI-QDGIKRFVKSFEEKDYDALILLKKVEDPTAFGVAELEDDGKRILKLVE  159 (361)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCEEEECCCCHH-HHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEECCCCEEEEEEE
T ss_conf             8760467645788847899860797374210-423789988533148003011043887884555899248979999883


Q ss_pred             CCCCCCCCCCHHHHHHHHH--HHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             3333222222024554100--02243220046753333333432000001320463135412563278457799999999
Q gi|254780922|r  160 KPNNPKSSFAVTGIYFYDQ--EVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFV  237 (292)
Q Consensus       160 KP~~~~sn~a~~GiY~f~~--~i~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~Gt~e~l~~As~~i  237 (292)
T Consensus       160 KPk~PPSNLAvvGlY~F~pPe~if~~~~~~kPSwRGElEITD~IQ~lIe~Gy~V~~~~v~G-WWkDTGk~eDLL~AN~~i  238 (361)
T TIGR01208       160 KPKEPPSNLAVVGLYMFRPPELIFEAIKNIKPSWRGELEITDAIQYLIEKGYKVGGSKVKG-WWKDTGKPEDLLDANRLI  238 (361)
T ss_pred             CCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEE-EECCCCCCHHHHHHHHHH
T ss_conf             3865787701233453387779888985288877662157757756531583777799978-870159802389999997


Q ss_pred             HH
Q ss_conf             99
Q gi|254780922|r  238 RN  239 (292)
Q Consensus       238 ~~  239 (292)
T Consensus       239 Ld  240 (361)
T TIGR01208       239 LD  240 (361)
T ss_pred             HH
T ss_conf             44