HHsearch alignment for GI: 254780922 and conserved domain: cd02508
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=100.00 E-value=1.2e-36 Score=250.10 Aligned_cols=184 Identities=25% Similarity=0.422 Sum_probs=147.4
Q ss_pred EEEECCCCCCCCCHHHCCCCCCEEEECCE-EHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC-------
Q ss_conf 79924888745533443898222247837-4799999999978986899997776564311122222222111-------
Q gi|254780922|r 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNK-PMIYYPVSTLMDAGIREILIISTPRDLPVLKEFLGSGEKWGVQ------- 74 (292)
Q Consensus 3 aiIlAaG~GtRl~P~T~~~pK~Llpi~gk-plI~~~l~~l~~~Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~------- 74 (292)
T Consensus 1 AvIlagG~GtRL~pLT~~~PKp~lpi~gk~~iId~~l~~l~~~Gi~~i~i~~~y~~-~~i~~hl~~g~~~~~~~~~~gi~ 79 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKS-RSLNDHLGSGKEWDLDRKNGGLF 79 (200)
T ss_pred CEEECCCCCCCCHHHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 98957888863625447997413088991620799999887679767998345358-99999985640125765668589
Q ss_pred CC----CCCCCCCCCCCCCCCCCCCCCCC---CCCCEEECCCCCCCCCCCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 12----22333322446852101112335---675213214432111100001110000011100122221000122212
Q gi|254780922|r 75 FS----YIEQLVPAGLAQSYILGAEFIGD---SSSVLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVE 147 (292)
Q Consensus 75 i~----y~~q~~p~Gta~Ai~~a~~~i~~---~~~~lilgDni~~~~~l~~~l~~~~~~~~~~ti~~~~v~~p~~yGvv~ 147 (292)
T Consensus 80 i~~~~~~~~~~~~~Gt~~~i~~~~~~l~~~~~~~~lv~ngD-~l~~~D~~~~l~~H~~~~a~~Ti~~------------- 145 (200)
T cd02508 80 ILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGD-HIYNMDYREMLDFHIESGADITVVY------------- 145 (200)
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCC-EEEECCHHHHHHHHHHCCCCEEEEE-------------
T ss_conf 96313336876553478999999998721788729997699-7870699999999987699989999-------------
Q ss_pred CCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECC
Q ss_conf 2221000100133333222222024554100022-4322004675333333343200000132046313541256327
Q gi|254780922|r 148 VDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVV-NIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDA 224 (292)
Q Consensus 148 ~d~~~~i~~i~EKP~~~~sn~a~~GiY~f~~~i~-~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~ 224 (292)
T Consensus 146 --------------------~in~GiYi~~~~~l~~~l~~~~~~~-~~d~~~d~ip~l~~~~~-v~~y~~~g-yw~DI 200 (200)
T cd02508 146 --------------------KASMGIYIFSKDLLIELLEEDAADG-SHDFGKDIIPAMLKKLK-IYAYEFNG-YWADI 200 (200)
T ss_pred --------------------EEECEEEEEEHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHCCC-EEEEECCC-EEECC
T ss_conf --------------------8504899980899999998632467-67558999999960398-89996688-57494