HHsearch alignment for GI: 254780922 and conserved domain: cd02516
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.47 E-value=7.1e-14 Score=107.23 Aligned_cols=206 Identities=21% Similarity=0.287 Sum_probs=116.4
Q ss_pred EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7992488874553344389822224783747999999999789-868999977765643111222222221111222333
Q gi|254780922|r 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQL 81 (292)
Q Consensus 3 aiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~G-i~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~ 81 (292)
T Consensus 3 aIIlAaG~G~R~~---~~~PKQf~~i~gk~ii~~sl~~f~~~~~i~~Iivv~~~~~~~~~~~~~~~~~--~~~i~~v~-- 75 (218)
T cd02516 3 AIILAAGSGSRMG---ADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGL--SKVVKIVE-- 75 (218)
T ss_pred EEEECCCCCCCCC---CCCCCCEEEECCEEHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCC--CCCEEEEC--
T ss_conf 9992683471488---5798523358967999999999975899897999968378999999886447--98769989--
Q ss_pred CCCCC--CCCCCCCCCCCC--CCCCCEEE-CCCCCCCC-CCCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 32244--685210111233--56752132-14432111-10000111000001110012222100012221222210001
Q gi|254780922|r 82 VPAGL--AQSYILGAEFIG--DSSSVLIL-GDNVFYGS-DISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAI 155 (292)
Q Consensus 82 ~p~Gt--a~Ai~~a~~~i~--~~~~~lil-gDni~~~~-~l~~~l~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~~~i~ 155 (292)
T Consensus 76 --GG~tR~~SV~ngl~~l~~~~~~~VlIHDaaRP~i~~~~i~~li~~~~--~~~~~i~~~p~~DT----ik~~~~~~~i~ 147 (218)
T cd02516 76 --GGATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALK--EYGAAIPAVPVTDT----IKRVDDDGVVV 147 (218)
T ss_pred --CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH--HCCCEEEEECCHHC----EEEECCCCEEE
T ss_conf --98409999998987401269998999257677899999999999997--37871898425101----79963897798
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHH--HH-CCCCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECCCCHHHHHH
Q ss_conf 00133333222222024554100022432--20-0467533333334320000013204631354125632784577999
Q gi|254780922|r 156 SIEEKPNNPKSSFAVTGIYFYDQEVVNIA--RN-IRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLD 232 (292)
Q Consensus 156 ~i~EKP~~~~sn~a~~GiY~f~~~i~~~~--~~-l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~Gt~e~l~~ 232 (292)
T Consensus 148 ~t~d-----R~~l~~----~QTPQ~F~~~~l~~a~~~~~~~~~~~TDd~sl~~~~g~~v~~v~G~~~-N~KIT~~eDl~~ 217 (218)
T cd02516 148 ETLD-----REKLWA----AQTPQAFRLDLLLKAHRQASEEGEEFTDDASLVEAAGGKVALVEGSED-NIKITTPEDLAL 217 (218)
T ss_pred EECC-----CCCEEE----EECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEECCCC-CCCCCCHHHHHH
T ss_conf 6237-----613798----748754259999999999986499978589999986997699975875-585998999824
Q ss_pred H
Q ss_conf 9
Q gi|254780922|r 233 T 233 (292)
Q Consensus 233 A 233 (292)
T Consensus 218 A 218 (218)
T cd02516 218 A 218 (218)
T ss_pred C
T ss_conf 9