HHsearch alignment for GI: 254780922 and conserved domain: cd02517
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.34 E-value=2.1e-12 Score=98.00 Aligned_cols=218 Identities=18% Similarity=0.237 Sum_probs=133.0
Q ss_pred EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7992488874553344389822224783747999999999789-868999977765643111222222221111222333
Q gi|254780922|r 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQL 81 (292)
Q Consensus 3 aiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~G-i~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~ 81 (292)
T Consensus 4 ~iIPAR~~S~Rlp------~K~L~~I~G~pmI~~v~~~a~~s~~~d~V~VATD--d~eI~-~~~---~~~g~~~imT~~~ 71 (239)
T cd02517 4 VVIPARYASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATD--DERIA-DAV---ESFGGKVVMTSPD 71 (239)
T ss_pred EEECCCCCCCCCC------CCCCHHHCCCCHHHHHHHHHHHCCCCCEEEEECC--CHHHH-HHH---CCCCCCCCCCCCC
T ss_conf 9975887687899------9730453995989999999996699884999648--26555-332---1479740104643
Q ss_pred CCCCCCCCCCCCCCCCCCC-CC-CEEECCCCCCCC-CCCCHHHHHCCCH-HHHHCCCCCCCCCC---CCCCC--CCCCCC
Q ss_conf 3224468521011123356-75-213214432111-1000011100000-11100122221000---12221--222210
Q gi|254780922|r 82 VPAGLAQSYILGAEFIGDS-SS-VLILGDNVFYGS-DISDIFHKARARR-NSATVVGCHVQNPQ---RYGVV--EVDSSN 152 (292)
Q Consensus 82 ~p~Gta~Ai~~a~~~i~~~-~~-~lilgDni~~~~-~l~~~l~~~~~~~-~~~ti~~~~v~~p~---~yGvv--~~d~~~ 152 (292)
T Consensus 72 h~~GT-dRi~ea~~~l~~~~D~iinvQGDePli~p~~I~~~i~~~~~~~~~~v~t~~~~i~~~~~~~~~n~VKvv~~~~~ 150 (239)
T cd02517 72 HPSGT-DRIAEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDG 150 (239)
T ss_pred CCCCC-HHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHCCCCCEEEEECCCC
T ss_conf 35621-59999999719988989995187567899999999999852887559874023699889418996399978988
Q ss_pred CHHHCCCCCC-------CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECCC
Q ss_conf 0010013333-------322222202455410002243220046753333333432000001320463135412563278
Q gi|254780922|r 153 QAISIEEKPN-------NPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAG 225 (292)
Q Consensus 153 ~i~~i~EKP~-------~~~sn~a~~GiY~f~~~i~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~G 225 (292)
T Consensus 151 ~alyfSRs~IP~~~~~~~~~~~~khiGIy~f~~~~L~~f~~~~~s~lE~~E~lEqL-R~leng~~I~~~~~~~~~-~~VD 228 (239)
T cd02517 151 YALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQIESLEQL-RALENGYKIKVVETDHES-IGVD 228 (239)
T ss_pred CCHHCCCCCCCCCCCCCCCCCEEEEEEEEEECHHHHHHHHCCCCCHHHHHHHHHHH-HHHHCCCEEEEEEECCCC-CCCC
T ss_conf 51103347886434565550410377655633999999873799825777608999-999839806899969999-8988
Q ss_pred CHHHHHHHHH
Q ss_conf 4577999999
Q gi|254780922|r 226 TPESLLDTAV 235 (292)
Q Consensus 226 t~e~l~~As~ 235 (292)
T Consensus 229 t~eDl~~vek 238 (239)
T cd02517 229 TPEDLERVEA 238 (239)
T ss_pred CHHHHHHHHC
T ss_conf 9999999970