HHsearch alignment for GI: 254780922 and conserved domain: cd02526
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=94.05 E-value=0.11 Score=30.83 Aligned_cols=189 Identities=11% Similarity=0.109 Sum_probs=84.1
Q ss_pred EEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCEEECC
Q ss_conf 747999999999789868999977765643111222222221111222333322446852101112335--675213214
Q gi|254780922|r 31 KPMIYYPVSTLMDAGIREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGD--SSSVLILGD 108 (292)
Q Consensus 31 kplI~~~l~~l~~~Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~~p~Gta~Ai~~a~~~i~~--~~~~lilgD 108 (292)
T Consensus 10 ~~~l~~~L~sl~~-q~~eIiVVDN~S~d~~-~~~~---~~~~~~v~~i~~~~N~G~a~g~N~Gi~~a~~~~~d~i~~ln~ 84 (237)
T cd02526 10 LSKLKELLAALAE-QVDKVVVVDNSSGNDI-ELRL---RLNSEKIELIHLGENLGIAKALNIGIKAALENGADYVLLFDQ 84 (237)
T ss_pred HHHHHHHHHHHHC-CCCEEEEEECCCCHHH-HHHH---HHCCCCEEEEECCCCCCHHHHCCCCCHHHHCCCCCEEEEECC
T ss_conf 9999999997663-7998999969889028-9999---861998699989997785887274303341179778999357
Q ss_pred CCCCCCC-CCCHHHHHCC--CHHHHHCCCCCCCCC---CCCCCCCCCCCCCHHHCCCCCCCC-CCCCCH-HHHHHHHHHH
Q ss_conf 4321111-0000111000--001110012222100---012221222210001001333332-222220-2455410002
Q gi|254780922|r 109 NVFYGSD-ISDIFHKARA--RRNSATVVGCHVQNP---QRYGVVEVDSSNQAISIEEKPNNP-KSSFAV-TGIYFYDQEV 180 (292)
Q Consensus 109 ni~~~~~-l~~~l~~~~~--~~~~~ti~~~~v~~p---~~yGvv~~d~~~~i~~i~EKP~~~-~sn~a~-~GiY~f~~~i 180 (292)
T Consensus 85 D~~~~~~~l~~l~~~~~~~~~~~~vg~~~p~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~sg-~lir~~~ 162 (237)
T cd02526 85 DSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGY-KLRIQKEGEEGLKEVDFLITSG-SLISLEA 162 (237)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCEECCEEEECC-EEEEHHH
T ss_conf 5655905999999999852227988999717986899800454211253-3223544247844604303014-3778999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECCCCH
Q ss_conf 24322004675333333343200000132046313541256327845
Q gi|254780922|r 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTP 227 (292)
Q Consensus 181 ~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~Gt~ 227 (292)
T Consensus 163 ~~~vG~fde~fF~y~ED~Dl~~R~~~~G~~-i~~~p~a~v~H~~G~~ 208 (237)
T cd02526 163 LEKVGGFDEDLFIDYVDTEWCLRARSKGYK-IYVVPDAVLKHELGDK 208 (237)
T ss_pred HHHHCCCCHHHCCCCCHHHHHHHHHHCCCC-EEEECCEEEEECCCCC
T ss_conf 998579968977937199999999985997-9998988999789984