HHsearch alignment for GI: 254780922 and conserved domain: cd02540
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=100.00 E-value=0 Score=346.09 Aligned_cols=218 Identities=21% Similarity=0.337 Sum_probs=188.6
Q ss_pred EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79924888745533443898222247837479999999997898689999777656431112222222211112223333
Q gi|254780922|r 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQLV 82 (292)
Q Consensus 3 aiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~~ 82 (292)
T Consensus 1 AvIlAaG~GtRl~~---~~PKpllpi~~kpii~~ii~~l~~~gi~~i~iv~~~~~-e~i~~~~~~-----~~i~~v~Q~~ 71 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGA-EQVKKALAN-----PNVEFVLQEE 71 (229)
T ss_pred CEEECCCCCCCCCC---CCCCCCCEECCEEHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHCC-----CCEEEEEECC
T ss_conf 98946878757998---97841518998799999999999769975996357689-999987543-----8726998068
Q ss_pred CCCCCCCCCCCCCCCCC--CCCCEEECCC-CCCCCCCCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf 22446852101112335--6752132144-32111100001110000011100122221000122212222100010013
Q gi|254780922|r 83 PAGLAQSYILGAEFIGD--SSSVLILGDN-VFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEE 159 (292)
Q Consensus 83 p~Gta~Ai~~a~~~i~~--~~~~lilgDn-i~~~~~l~~~l~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~~~i~~i~E 159 (292)
T Consensus 72 ~lGta~Av~~a~~~i~~~~~~~lVl~gD~pli~~~~l~~l~~~~~~~~~~~ti~~~~~~~p~~YG~v~~d~~g~v~~ivE 151 (229)
T cd02540 72 QLGTGHAVKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGNGKVLRIVE 151 (229)
T ss_pred CCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCEEEEEE
T ss_conf 89737899999874458887299995896453678899999999965996699998604876786799889997899998
Q ss_pred CC----CCCCCCCCHHHHHHHHHH-HHHHHHHCCCC-CCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECCC--CHHHH
Q ss_conf 33----332222220245541000-22432200467-53333333432000001320463135412563278--45779
Q gi|254780922|r 160 KP----NNPKSSFAVTGIYFYDQE-VVNIARNIRPS-ARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAG--TPESL 230 (292)
Q Consensus 160 KP----~~~~sn~a~~GiY~f~~~-i~~~~~~l~~s-~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~G--t~e~l 230 (292)
T Consensus 152 kk~~~~~~~~~~~~n~GiYif~~~~l~~~l~~l~~~~~~gE~~ltD~i~~~i~~g~kv~~~~~~~-~~~~~Gin~~~dl 229 (229)
T cd02540 152 EKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADD-EEEVLGVNDRVQL 229 (229)
T ss_pred CCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCEEEEEECC-HHHEECCCCHHHC
T ss_conf 87876543454322227999859999999984798766887889999999998899189999288-7661378897879