HHsearch alignment for GI: 254780922 and conserved domain: cd02540

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=100.00  E-value=0  Score=346.09  Aligned_cols=218  Identities=21%  Similarity=0.337  Sum_probs=188.6

Q ss_pred             EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             79924888745533443898222247837479999999997898689999777656431112222222211112223333
Q gi|254780922|r    3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQLV   82 (292)
Q Consensus         3 aiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~~   82 (292)
T Consensus         1 AvIlAaG~GtRl~~---~~PKpllpi~~kpii~~ii~~l~~~gi~~i~iv~~~~~-e~i~~~~~~-----~~i~~v~Q~~   71 (229)
T cd02540           1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGA-EQVKKALAN-----PNVEFVLQEE   71 (229)
T ss_pred             CEEECCCCCCCCCC---CCCCCCCEECCEEHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHCC-----CCEEEEEECC
T ss_conf             98946878757998---97841518998799999999999769975996357689-999987543-----8726998068


Q ss_pred             CCCCCCCCCCCCCCCCC--CCCCEEECCC-CCCCCCCCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf             22446852101112335--6752132144-32111100001110000011100122221000122212222100010013
Q gi|254780922|r   83 PAGLAQSYILGAEFIGD--SSSVLILGDN-VFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEE  159 (292)
Q Consensus        83 p~Gta~Ai~~a~~~i~~--~~~~lilgDn-i~~~~~l~~~l~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~~~i~~i~E  159 (292)
T Consensus        72 ~lGta~Av~~a~~~i~~~~~~~lVl~gD~pli~~~~l~~l~~~~~~~~~~~ti~~~~~~~p~~YG~v~~d~~g~v~~ivE  151 (229)
T cd02540          72 QLGTGHAVKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGNGKVLRIVE  151 (229)
T ss_pred             CCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCEEEEEE
T ss_conf             89737899999874458887299995896453678899999999965996699998604876786799889997899998


Q ss_pred             CC----CCCCCCCCHHHHHHHHHH-HHHHHHHCCCC-CCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECCC--CHHHH
Q ss_conf             33----332222220245541000-22432200467-53333333432000001320463135412563278--45779
Q gi|254780922|r  160 KP----NNPKSSFAVTGIYFYDQE-VVNIARNIRPS-ARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAG--TPESL  230 (292)
Q Consensus       160 KP----~~~~sn~a~~GiY~f~~~-i~~~~~~l~~s-~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~G--t~e~l  230 (292)
T Consensus       152 kk~~~~~~~~~~~~n~GiYif~~~~l~~~l~~l~~~~~~gE~~ltD~i~~~i~~g~kv~~~~~~~-~~~~~Gin~~~dl  229 (229)
T cd02540         152 EKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADD-EEEVLGVNDRVQL  229 (229)
T ss_pred             CCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCEEEEEECC-HHHEECCCCHHHC
T ss_conf             87876543454322227999859999999984798766887889999999998899189999288-7661378897879