HHsearch alignment for GI: 254780922 and conserved domain: cd04181
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=100.00 E-value=0 Score=349.03 Aligned_cols=217 Identities=35% Similarity=0.649 Sum_probs=198.6
Q ss_pred EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79924888745533443898222247837479999999997898689999777656431112222222211112223333
Q gi|254780922|r 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQLV 82 (292)
Q Consensus 3 aiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~~ 82 (292)
T Consensus 1 AiIlaaG~GtRl~~~t~~~PK~Ll~v~gkplI~~~l~~l~~~g~~~iiiv~~~~~-~~i~~~~~~~~~~~~~i~~~~e~~ 79 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLG-EQIEEYFGDGSKFGVNIEYVVQEE 79 (217)
T ss_pred CEEECCCCCCCCCHHHCCCCCCCCEECCCHHHHHHHHHHHHCCCCEEEEEEECCC-CCHHEEEECCCCCCCEEEEEECCC
T ss_conf 9890688866578213699840238999449999999999749977999861233-100001100125796599953488
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 22446852101112335675213214432111100001110000011100122221000122212222100010013333
Q gi|254780922|r 83 PAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPN 162 (292)
Q Consensus 83 p~Gta~Ai~~a~~~i~~~~~~lilgDni~~~~~l~~~l~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~~~i~~i~EKP~ 162 (292)
T Consensus 80 ~~Gt~~al~~a~~~i~~~~~lv~~~D~i-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~yg~v~~d~~~~v~~i~EKp~ 158 (217)
T cd04181 80 PLGTAGAVRNAEDFLGDDDFLVVNGDVL-TDLDLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDDGRVTRFVEKPT 158 (217)
T ss_pred CCCCHHHHHHHHCCCCCCCEEEECCCCC-CCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCC
T ss_conf 7763455432100269997899727822-250899999999757996799987403677630899888510436898899
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECCC
Q ss_conf 322222202455410002243220046753333333432000001320463135412563278
Q gi|254780922|r 163 NPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAG 225 (292)
Q Consensus 163 ~~~sn~a~~GiY~f~~~i~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~G 225 (292)
T Consensus 159 ~~~~~~~~~G~y~~~~~~f~~i~~~~--~~~~~~l~d~~~~l~~~~kv~~-~~~~g-~W~DiG 217 (217)
T cd04181 159 LPESNLANAGIYIFEPEILDYIPEIL--PRGEDELTDAIPLLIEEGKVYG-YPVDG-YWLDIG 217 (217)
T ss_pred CCCCCEEEEEEEEECHHHHHHHHHCC--CCCEEEHHHHHHHHHHCCCEEE-EEECC-EEEECC
T ss_conf 98788489989999999999765158--8875118999999985799699-99799-999179