HHsearch alignment for GI: 254780922 and conserved domain: cd04181

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=100.00  E-value=0  Score=349.03  Aligned_cols=217  Identities=35%  Similarity=0.649  Sum_probs=198.6

Q ss_pred             EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             79924888745533443898222247837479999999997898689999777656431112222222211112223333
Q gi|254780922|r    3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQLV   82 (292)
Q Consensus         3 aiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~~   82 (292)
T Consensus         1 AiIlaaG~GtRl~~~t~~~PK~Ll~v~gkplI~~~l~~l~~~g~~~iiiv~~~~~-~~i~~~~~~~~~~~~~i~~~~e~~   79 (217)
T cd04181           1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLG-EQIEEYFGDGSKFGVNIEYVVQEE   79 (217)
T ss_pred             CEEECCCCCCCCCHHHCCCCCCCCEECCCHHHHHHHHHHHHCCCCEEEEEEECCC-CCHHEEEECCCCCCCEEEEEECCC
T ss_conf             9890688866578213699840238999449999999999749977999861233-100001100125796599953488


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf             22446852101112335675213214432111100001110000011100122221000122212222100010013333
Q gi|254780922|r   83 PAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPN  162 (292)
Q Consensus        83 p~Gta~Ai~~a~~~i~~~~~~lilgDni~~~~~l~~~l~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~~~i~~i~EKP~  162 (292)
T Consensus        80 ~~Gt~~al~~a~~~i~~~~~lv~~~D~i-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~yg~v~~d~~~~v~~i~EKp~  158 (217)
T cd04181          80 PLGTAGAVRNAEDFLGDDDFLVVNGDVL-TDLDLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDDGRVTRFVEKPT  158 (217)
T ss_pred             CCCCHHHHHHHHCCCCCCCEEEECCCCC-CCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEECCCCCEEEEEECCC
T ss_conf             7763455432100269997899727822-250899999999757996799987403677630899888510436898899


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECCC
Q ss_conf             322222202455410002243220046753333333432000001320463135412563278
Q gi|254780922|r  163 NPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAG  225 (292)
Q Consensus       163 ~~~sn~a~~GiY~f~~~i~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~G  225 (292)
T Consensus       159 ~~~~~~~~~G~y~~~~~~f~~i~~~~--~~~~~~l~d~~~~l~~~~kv~~-~~~~g-~W~DiG  217 (217)
T cd04181         159 LPESNLANAGIYIFEPEILDYIPEIL--PRGEDELTDAIPLLIEEGKVYG-YPVDG-YWLDIG  217 (217)
T ss_pred             CCCCCEEEEEEEEECHHHHHHHHHCC--CCCEEEHHHHHHHHHHCCCEEE-EEECC-EEEECC
T ss_conf             98788489989999999999765158--8875118999999985799699-99799-999179