HHsearch alignment for GI: 254780922 and conserved domain: pfam01128

>pfam01128 IspD Uncharacterized protein family UPF0007.
Probab=99.62  E-value=7.7e-16  Score=119.57  Aligned_cols=210  Identities=17%  Similarity=0.265  Sum_probs=126.2

Q ss_pred             EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             7992488874553344389822224783747999999999789-868999977765643111222222221111222333
Q gi|254780922|r    3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQL   81 (292)
Q Consensus         3 aiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~G-i~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~   81 (292)
T Consensus         3 aIIlAaG~G~R~~---~~~pKQf~~l~gkpil~~sl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~-----~~i~~v~GG   74 (221)
T pfam01128         3 AVIPAAGSGKRMG---AGVPKQFLQLLGQPLLEHTVDAFLASPVVDRIVVAVSPDDTPEFRQLLGD-----PSIQLVAGG   74 (221)
T ss_pred             EEEECCEECCCCC---CCCCCCCCEECCEEHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHCCC-----CCEEEECCC
T ss_conf             9993581061269---58986536689888999999999638888979999677889999986079-----987996799


Q ss_pred             CCCCCCCCCCCCCCCCCC-CCCCEEE-CCCCCCCCC-CCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf             322446852101112335-6752132-144321111-0000111000001110012222100012221222210001001
Q gi|254780922|r   82 VPAGLAQSYILGAEFIGD-SSSVLIL-GDNVFYGSD-ISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIE  158 (292)
Q Consensus        82 ~p~Gta~Ai~~a~~~i~~-~~~~lil-gDni~~~~~-l~~~l~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~~~i~~i~  158 (292)
T Consensus        75 ~--tR~~SV~ngL~~l~~~~~~VlIHDaaRP~v~~~~i~~li~~~-~~~~~~~i~~~p~~DTik----~v~~~~~i~~t~  147 (221)
T pfam01128        75 D--TRQDSVLNGLKALAGTAKFVLVHDGARPCLPHADLARLLAAL-ETGTQGAILALPVTDTIK----RVEADGVVAGTP  147 (221)
T ss_pred             C--CHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH-HHHCCCCEEEECCCCCEE----EECCCCCEECCC
T ss_conf             6--389999999998358999899983656679999999999998-600486135412466435----753786044035


Q ss_pred             CCCCCCCCCCCHHHHH-HHHHHHHHH--H-HHCCCCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECCCCHHHHHHHH
Q ss_conf             3333322222202455-410002243--2-20046753333333432000001320463135412563278457799999
Q gi|254780922|r  159 EKPNNPKSSFAVTGIY-FYDQEVVNI--A-RNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTA  234 (292)
Q Consensus       159 EKP~~~~sn~a~~GiY-~f~~~i~~~--~-~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~Gt~e~l~~As  234 (292)
T Consensus       148 d-----R~~-----l~~~QTPQ~F~~~~L~~a~~~~~~~~~~~TDd~sl~~~~g~~v~~v~G~~~-N~KIT~~eDl~~ae  216 (221)
T pfam01128       148 D-----RSG-----LWAAQTPQGFRVDLLLAAHQRGDQPGAEITDDASLVEHAGGSVQVVPGRPD-NLKITTPEDLALAE  216 (221)
T ss_pred             C-----CHH-----HEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEECCCC-CCCCCCHHHHHHHH
T ss_conf             6-----421-----011007620069999999998886299976299999977997799965842-38878999999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780922|r  235 VFVR  238 (292)
Q Consensus       235 ~~i~  238 (292)
T Consensus       217 ~lL~  220 (221)
T pfam01128       217 AILR  220 (221)
T ss_pred             HHHC
T ss_conf             9967