HHsearch alignment for GI: 254780922 and conserved domain: pfam01128
>pfam01128 IspD Uncharacterized protein family UPF0007.
Probab=99.62 E-value=7.7e-16 Score=119.57 Aligned_cols=210 Identities=17% Similarity=0.265 Sum_probs=126.2
Q ss_pred EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7992488874553344389822224783747999999999789-868999977765643111222222221111222333
Q gi|254780922|r 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQL 81 (292)
Q Consensus 3 aiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~G-i~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~ 81 (292)
T Consensus 3 aIIlAaG~G~R~~---~~~pKQf~~l~gkpil~~sl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~-----~~i~~v~GG 74 (221)
T pfam01128 3 AVIPAAGSGKRMG---AGVPKQFLQLLGQPLLEHTVDAFLASPVVDRIVVAVSPDDTPEFRQLLGD-----PSIQLVAGG 74 (221)
T ss_pred EEEECCEECCCCC---CCCCCCCCEECCEEHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHCCC-----CCEEEECCC
T ss_conf 9993581061269---58986536689888999999999638888979999677889999986079-----987996799
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCEEE-CCCCCCCCC-CCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 322446852101112335-6752132-144321111-0000111000001110012222100012221222210001001
Q gi|254780922|r 82 VPAGLAQSYILGAEFIGD-SSSVLIL-GDNVFYGSD-ISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIE 158 (292)
Q Consensus 82 ~p~Gta~Ai~~a~~~i~~-~~~~lil-gDni~~~~~-l~~~l~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~~~i~~i~ 158 (292)
T Consensus 75 ~--tR~~SV~ngL~~l~~~~~~VlIHDaaRP~v~~~~i~~li~~~-~~~~~~~i~~~p~~DTik----~v~~~~~i~~t~ 147 (221)
T pfam01128 75 D--TRQDSVLNGLKALAGTAKFVLVHDGARPCLPHADLARLLAAL-ETGTQGAILALPVTDTIK----RVEADGVVAGTP 147 (221)
T ss_pred C--CHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH-HHHCCCCEEEECCCCCEE----EECCCCCEECCC
T ss_conf 6--389999999998358999899983656679999999999998-600486135412466435----753786044035
Q ss_pred CCCCCCCCCCCHHHHH-HHHHHHHHH--H-HHCCCCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECCCCHHHHHHHH
Q ss_conf 3333322222202455-410002243--2-20046753333333432000001320463135412563278457799999
Q gi|254780922|r 159 EKPNNPKSSFAVTGIY-FYDQEVVNI--A-RNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTA 234 (292)
Q Consensus 159 EKP~~~~sn~a~~GiY-~f~~~i~~~--~-~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~Gt~e~l~~As 234 (292)
T Consensus 148 d-----R~~-----l~~~QTPQ~F~~~~L~~a~~~~~~~~~~~TDd~sl~~~~g~~v~~v~G~~~-N~KIT~~eDl~~ae 216 (221)
T pfam01128 148 D-----RSG-----LWAAQTPQGFRVDLLLAAHQRGDQPGAEITDDASLVEHAGGSVQVVPGRPD-NLKITTPEDLALAE 216 (221)
T ss_pred C-----CHH-----HEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEECCCC-CCCCCCHHHHHHHH
T ss_conf 6-----421-----011007620069999999998886299976299999977997799965842-38878999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780922|r 235 VFVR 238 (292)
Q Consensus 235 ~~i~ 238 (292)
T Consensus 217 ~lL~ 220 (221)
T pfam01128 217 AILR 220 (221)
T ss_pred HHHC
T ss_conf 9967