HHsearch alignment for GI: 254780922 and conserved domain: pfam02348

>pfam02348 CTP_transf_3 Cytidylyltransferase. This family consists of two main Cytidylyltransferase activities: 1) 3-deoxy-manno-octulosonate cytidylyltransferase,, EC:2.7.7.38 catalysing the reaction:- CTP + 3-deoxy-D-manno-octulosonate <= diphosphate + CMP-3-deoxy-D-manno-octulosonate, 2) acylneuraminate cytidylyltransferase EC:2.7.7.43,, catalysing the reaction:- CTP + N-acylneuraminate <= diphosphate + CMP-N-acylneuraminate. NeuAc cytydilyltransferase of Mannheimia haemolytica has been characterized describing kinetics and regulation by substrate charge, energetic charge and amino-sugar demand.
Probab=98.96  E-value=7.4e-10  Score=82.03  Aligned_cols=176  Identities=19%  Similarity=0.264  Sum_probs=108.2

Q ss_pred             EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             7992488874553344389822224783747999999999789-868999977765643111222222221111222333
Q gi|254780922|r    3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQL   81 (292)
Q Consensus         3 aiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~G-i~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~   81 (292)
T Consensus         2 ~iIpAR~~S~Rlp------~K~L~~i~gkpmI~~v~~~a~~s~~~~~viVaTd--~~~I-~~~~---~~~~~~~i~t~~~   69 (197)
T pfam02348         2 AIIPARSGSKRLP------GKNLLKLGGKPLIARVIEAALQSKLFDKVVVATD--SEEI-ADIA---EKFGGGVVVRRGS   69 (197)
T ss_pred             EEECCCCCCCCCC------CCCCHHHCCCCHHHHHHHHHHHCCCCCEEEEECC--CCEE-EEEC---CCCCCCEEEEEEC
T ss_conf             8984588887899------9620352990689999999997589872899548--3014-4201---2323313576402


Q ss_pred             CCCCCCCCCCCCCCCCCCCC-CCEEECCCCCCCCC-CCCHHHHHCCCHHHH--HCCCC-----CCCCCCCCCCCCCCCCC
Q ss_conf             32244685210111233567-52132144321111-000011100000111--00122-----22100012221222210
Q gi|254780922|r   82 VPAGLAQSYILGAEFIGDSS-SVLILGDNVFYGSD-ISDIFHKARARRNSA--TVVGC-----HVQNPQRYGVVEVDSSN  152 (292)
Q Consensus        82 ~p~Gta~Ai~~a~~~i~~~~-~~lilgDni~~~~~-l~~~l~~~~~~~~~~--ti~~~-----~v~~p~~yGvv~~d~~~  152 (292)
T Consensus        70 ~~~gt~R~~ea~~~~~~~~d~ivnvqgD~Pli~p~~i~~~i~~~~~~~~~~~~t~~~~~~~~~~~~~~n~vK-vv~~~~~  148 (197)
T pfam02348        70 LASGTDRFIEAVKAFLADEEIIVNLQGDEPLLQPTSILRAIEHLREAGEDYVSTLVKPVVSSEEILNPNPLK-VVLDDAG  148 (197)
T ss_pred             CCCCCCHHHHHHHHHCCHHEEEEECCCCEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHCCCCCCE-EEECCCC
T ss_conf             356521199999864341009996589668758899999999998589872898204737888933998749-9988899


Q ss_pred             CHHHCCCCCC--------CCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             0010013333--------32222220245541000224322004675
Q gi|254780922|r  153 QAISIEEKPN--------NPKSSFAVTGIYFYDQEVVNIARNIRPSA  191 (292)
Q Consensus       153 ~i~~i~EKP~--------~~~sn~a~~GiY~f~~~i~~~~~~l~~s~  191 (292)
T Consensus       149 ~alyfsR~~iP~~~~~~~~~~~~~~h~gIY~f~~~~L~~f~~l~~s~  195 (197)
T pfam02348       149 YALYFSRSPIPYIRDHPAPLQLYLRHKGIYAFRKEHLIRYVIDTPSD  195 (197)
T ss_pred             CEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHCCCCCC
T ss_conf             88241378897431232557875489999898899999987689999