RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter asiaticus str. psy62] (292 letters) >gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240 Score = 394 bits (1014), Expect = e-110 Identities = 148/240 (61%), Positives = 185/240 (77%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 MKGI+LAGGSGTRL PLT ++SKQ+LP+Y+KPMIYYP+STLM AGIREILIISTP DLP+ Sbjct: 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPL 60 Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120 KE LG G G++ +Y Q P GLAQ++I+G EFIGD LILGDN+FYG +S I Sbjct: 61 FKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIGDDPVCLILGDNIFYGQGLSPIL 120 Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180 +A A++ ATV G V +P+RYGVVE D + + +SIEEKP PKS++AVTG+YFYD +V Sbjct: 121 QRAAAQKEGATVFGYEVNDPERYGVVEFDENGRVLSIEEKPKKPKSNYAVTGLYFYDNDV 180 Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240 IA+ ++PSARGELEITDVN+ YL+KG L+VE L G AW D GT ESLL+ + FV+ I Sbjct: 181 FEIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFVQTI 240 >gnl|CDD|31402 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]. Length = 286 Score = 346 bits (890), Expect = 3e-96 Identities = 140/289 (48%), Positives = 183/289 (63%), Gaps = 3/289 (1%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 MKG++LAGGSGTRLRPLT ++ KQ+LP+Y+KPMIYYP+ TLM AGIR+ILI+ P D P Sbjct: 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPT 60 Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120 KE LG G +GV +Y Q P GLA + ++ +F+GD VL LGDN+F +S++ Sbjct: 61 FKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAEDFVGDDDFVLYLGDNIFQD-GLSELL 119 Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180 + AT++ V +P RYGVVE D + I +EEKP PKS+ AVTG+YFYD V Sbjct: 120 EHFAEEGSGATILLYEVDDPSRYGVVEFDEDGKVIGLEEKPKEPKSNLAVTGLYFYDPSV 179 Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240 + I+PSARGELEITD Y++KG L V L G W D GTPESLL+ FVR + Sbjct: 180 FEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIRG-WWLDTGTPESLLEANNFVRTV 238 Query: 241 ENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKK 289 R G +ACPEEIA+ +I+ L S YG YL +++ + Sbjct: 239 SKRQGFKIACPEEIAWN-GWIDGPGLIGLASQLEKSGYGQYLLELLRAR 286 >gnl|CDD|144176 pfam00483, NTP_transferase, Nucleotidyl transferase. This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247 Score = 254 bits (651), Expect = 2e-68 Identities = 100/247 (40%), Positives = 144/247 (58%), Gaps = 8/247 (3%) Query: 2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNK-PMIYYPVSTLMDAGIREILIISTPRDLPV 60 K I+LAGGSGTRL PLT L+K ++P+ +K PMI Y +S LM+AGIRE ++I T + Sbjct: 1 KAIILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFL 60 Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSS--VLILGDNVFYGSDISD 118 + E LG G K+G+Q +Y Q P G A + L A+F+GD VL+LG + Y D + Sbjct: 61 VAEQLGDGSKFGLQVTYALQPEPRGTAPAVALAADFLGDDDPELVLVLGGDHIYRMDFEE 120 Query: 119 I--FHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPK-SSFAVTGIYF 175 +A+A + T V++P YGV+E D + + I EKP+ PK S++A GIYF Sbjct: 121 AVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDENGRVIRFVEKPDLPKASNYASMGIYF 180 Query: 176 YDQEVV-NIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSA-WFDAGTPESLLDT 233 ++ V +A+ ++ ARGE EITD L+ G L + FL G A W D GT +SL + Sbjct: 181 FNSGVFLFLAKYLKELARGEDEITDAIPAALEDGDLDLAFLFRGYAYWSDVGTWDSLWEA 240 Query: 234 AVFVRNI 240 + + Sbjct: 241 NLKLLTG 247 >gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236 Score = 225 bits (575), Expect = 2e-59 Identities = 88/233 (37%), Positives = 136/233 (58%), Gaps = 6/233 (2%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREI-LIISTPRDLP 59 MKG++LAGG GTRLRPLT KQ++P+ KP+I Y + L +AGI +I +++ + Sbjct: 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEE- 59 Query: 60 VLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDI 119 +KE LG G ++GV+ +YI Q P GLA + + +F+GD V+ LGDN+ IS + Sbjct: 60 -IKEALGDGSRFGVRITYILQEEPLGLAHAVLAARDFLGDEPFVVYLGDNLIQE-GISPL 117 Query: 120 FHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQE 179 A+++ V++P+R+GV VD + + + EKP P S+ A+ G+Y + Sbjct: 118 VRDFLEEDADASILLAEVEDPRRFGVAVVD-DGRIVRLVEKPKEPPSNLALVGVYAFTPA 176 Query: 180 VVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLD 232 + + ++PS RGELEITD + +D+G + G W D GTPE LL+ Sbjct: 177 IFDAISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTG-WWKDTGTPEDLLE 228 >gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217 Score = 193 bits (493), Expect = 5e-50 Identities = 77/223 (34%), Positives = 119/223 (53%), Gaps = 6/223 (2%) Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62 ++LA G GTRLRPLTD K +LPI KP++ Y + L AGI EI+++ ++ Sbjct: 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLG-EQIE 59 Query: 63 EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFHK 122 E+ G G K+GV Y+ Q P G A + +F+GD +++ GD + D+S++ Sbjct: 60 EYFGDGSKFGVNIEYVVQEEPLGTAGAVRNAEDFLGDDDFLVVNGDVLTD-LDLSELLRF 118 Query: 123 ARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVVN 182 R + AT+ V++P RYGVVE+D + EKP P+S+ A GIY ++ E+++ Sbjct: 119 HREKGADATIAVKEVEDPSRYGVVELDDDGRVTRFVEKPTLPESNLANAGIYIFEPEILD 178 Query: 183 IARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAG 225 I P RGE E+TD +++G + W D G Sbjct: 179 YIPEILP--RGEDELTDAIPLLIEEGKVYG--YPVDGYWLDIG 217 >gnl|CDD|31401 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]. Length = 358 Score = 140 bits (355), Expect = 3e-34 Identities = 76/235 (32%), Positives = 117/235 (49%), Gaps = 10/235 (4%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 MK ++LAGG GTRLRPLTD K +LPI KP+I Y + L AG+ EI+++ Sbjct: 2 MKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLG-EQ 60 Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120 ++E+ G GE GV+ +Y+ + P G A + + +G +++ GD + D+S++ Sbjct: 61 IEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDLLGGDDFLVLNGDVLT-DLDLSELL 119 Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAI-SIEEKP--NNPKSSFAVTGIYFYD 177 + + AT+ V +P +GVVE D + + EKP P S+ GIY +D Sbjct: 120 EFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAGIYIFD 179 Query: 178 QEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLD 232 EV + E ++ KG ++ EG W D GTPE LL+ Sbjct: 180 PEVFDYIEKGERFDFEE----ELLPALAAKGEDVYGYVFEGY-WLDIGTPEDLLE 229 >gnl|CDD|31403 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]. Length = 291 Score = 110 bits (277), Expect = 5e-25 Identities = 66/269 (24%), Positives = 111/269 (41%), Gaps = 38/269 (14%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDL-- 58 K ++ A G GTR P T + K+MLPI +KP+I Y V + AGI EILI++ Sbjct: 5 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAI 64 Query: 59 -------PVLKEFLGSGEKW-----------GVQFSYIEQLVPAGLAQSYILGAEFIGDS 100 L+ L K V S++ Q P GL + + F+GD Sbjct: 65 EDHFDTSYELENTLEKRGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGDE 124 Query: 101 SSVLILGDNVFYGS-----DISDIFHKARARRNSATVVGCHVQNPQRYGVVEV-----DS 150 ++L D++ + +++ + V ++ +YGV++ Sbjct: 125 PFAVLLPDDLVDSEKPCLKQMIELY--EETGGSVIGVEEVPPEDVSKYGVIDPGEPVEKG 182 Query: 151 SNQAISIEEKP--NNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITD-VNSYYLDK 207 + + EKP S+ A+ G Y E+ +I +P A GE+++TD + + Sbjct: 183 VYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQLTDAIKKLLKKE 242 Query: 208 GLLAVEFLREGSAWFDAGTPESLLDTAVF 236 +LA F EG +D G+ + V Sbjct: 243 PVLAYVF--EGKR-YDCGSKLGYIKANVE 268 >gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220 Score = 109 bits (275), Expect = 9e-25 Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 20/231 (8%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63 +++AGG GTRLRPLT+ K ML + KP++ + + G R IS ++++ Sbjct: 2 VIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNF-YISVNYLAEMIED 60 Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFHKA 123 + G G K+GV SY+ + P G A + L E D L++ ++ + + Sbjct: 61 YFGDGSKFGVNISYVREDKPLGTAGALSLLPEKPTD--PFLVMNGDILTNLNYEHLLDFH 118 Query: 124 RARRNSATVVGC--HVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVV 181 + ATV VQ P YGVVE + SIEEKP + S GIY + EV+ Sbjct: 119 KENNADATVCVREYEVQVP--YGVVETEGGR-ITSIEEKPTH--SFLVNAGIYVLEPEVL 173 Query: 182 N-IARNIRPSARGELEITDVNSYYLDKGLLAVEF-LREGSAWFDAGTPESL 230 + I +N ++ D+ + +G F + E W D G PE Sbjct: 174 DLIPKNEF------FDMPDLIEKLIKEGKKVGVFPIHE--YWLDIGRPEDY 216 >gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267 Score = 108 bits (272), Expect = 2e-24 Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 43/266 (16%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPR---- 56 K ++ A G GTR P T + K+MLPI +KP+I Y V + AGI +I+I++ Sbjct: 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAI 60 Query: 57 -----DLPVLKEFLGSGEKW-----------GVQFSYIEQLVPAGLAQSYILGAEFIGDS 100 L+E L K Y+ Q P GL + + FIGD Sbjct: 61 EDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGDE 120 Query: 101 SSVLILGDNVFYG-----SDISDIFHKARARRNSATVVGCHVQNP---QRYGVVEVDSSN 152 ++LGD++ + + + K A+V+ P +YG+V+ + + Sbjct: 121 PFAVLLGDDLIDSKEPCLKQLIEAYEKTG-----ASVIAVEEVPPEDVSKYGIVKGEKID 175 Query: 153 QAI----SIEEKPN--NPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITD-VNSYYL 205 + + EKP S+ A+ G Y ++ +I N +P GE+++TD + Sbjct: 176 GDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLE 235 Query: 206 DKGLLAVEFLREGSAWFDAGTPESLL 231 ++ + A F EG +D G L Sbjct: 236 EEPVYAYVF--EGK-RYDCGNKLGYL 258 >gnl|CDD|36536 KOG1322, KOG1322, KOG1322, GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]. Length = 371 Score = 104 bits (261), Expect = 3e-23 Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 27/248 (10%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 +K I+L GG GTRLRPLT K ++P NKPMI + + L+++GI +I++ + + Sbjct: 10 VKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESL 69 Query: 61 LKEFLGS-GEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSS--VLILGDNVFYGSDIS 117 + + G++ GV+ + P G A L +F+ +L +V Sbjct: 70 NRHLSKAYGKELGVEILASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYK 129 Query: 118 DIFHKARARRNSATVVGCHVQNPQRYGVVEVD-SSNQAISIEEKPNNPKSSFAVTGIYFY 176 ++ RA T+V V P +YGVV +D + + I EKP + S+ GIY Sbjct: 130 EMVQFHRAHGAEITIVVTKVDEPSKYGVVVIDEDTGRVIRFVEKPKDLVSNKINAGIYIL 189 Query: 177 DQEVV--------NIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPE 228 + EV+ +I + I P+ E + + ++ L W D G P+ Sbjct: 190 NPEVLDRILLRPTSIEKEIFPAMAEEHQ---LYAFDLP------------GFWMDIGQPK 234 Query: 229 SLLDTAVF 236 L F Sbjct: 235 DFLTGFSF 242 >gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233 Score = 95.7 bits (239), Expect = 1e-20 Identities = 71/232 (30%), Positives = 112/232 (48%), Gaps = 36/232 (15%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIRE-ILIIS-TPRDL 58 MK ++L GG GTRLRPLT + K ++ NKPMI + + L AG++E IL ++ P D+ Sbjct: 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDM 60 Query: 59 -PVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFY--GSD 115 P LKE+ +K G++ ++ + P G A L + +GD D F+ SD Sbjct: 61 VPFLKEY---EKKLGIKITFSIETEPLGTAGPLALARDLLGD-------DDEPFFVLNSD 110 Query: 116 -ISDI-------FHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAI-SIEEKPNNPKS 166 I D FHK T++ V++P +YGVV D + I EKP Sbjct: 111 VICDFPLAELLDFHKKHGAE--GTILVTKVEDPSKYGVVVHDENTGRIERFVEKPKVFVG 168 Query: 167 SFAVTGIYFYDQEVVN--------IARNIRP--SARGELEITDVNSYYLDKG 208 + GIY + V++ I + I P ++ G+L ++ +++D G Sbjct: 169 NKINAGIYILNPSVLDRIPLRPTSIEKEIFPKMASEGQLYAYELPGFWMDIG 220 >gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223 Score = 85.7 bits (213), Expect = 1e-17 Identities = 59/228 (25%), Positives = 98/228 (42%), Gaps = 11/228 (4%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63 ++LAGG GTRLR + L K + P+ +P + Y + L GI I ++S ++E Sbjct: 2 VILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRI-VLSVGYLAEQIEE 60 Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFHKA 123 + G G + G++ Y+ + P G + + + +++ GD ++ D+ + Sbjct: 61 YFGDGYRGGIRIYYVIEPEPLGTGGAIKNALPKLPEDQFLVLNGDT-YFDVDLLALLAAL 119 Query: 124 RARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVVNI 183 RA AT+ V + RYG V VD + I+ EK G+Y +E++ Sbjct: 120 RASGADATMALRRVPDASRYGNVTVDGDGRVIAFVEKGPGAAPGLINGGVYLLRKEILAE 179 Query: 184 ARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWF-DAGTPESL 230 S LE DV + +G L E +F D G PE Sbjct: 180 IPADAFS----LE-ADVLPALVKRGRLYG---FEVDGYFIDIGIPEDY 219 >gnl|CDD|30797 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]. Length = 393 Score = 84.5 bits (209), Expect = 3e-17 Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 20/197 (10%) Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNK-PMIYYPVSTLMDAGIREILIISTPRDLPVL 61 I+LAGG G+RL PLT +K +P K +I + +S +++GIR I +++ + L Sbjct: 8 AIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSH-SL 66 Query: 62 KEFLGSGEKWGVQF--SYIEQLVP---AGLAQSYILGAEFI---------GDSSSVLILG 107 + +G G W + + L G + Y A+ I D VLIL Sbjct: 67 NDHIGRGWPWDLDRKNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILS 126 Query: 108 DNVFYGSDISDIFHKARARRNSATVVGCHV--QNPQRYGVVEVDSSNQAISIEEKPNN-- 163 + Y D SD+ TV V + R+GV+ VD + + I EKP + Sbjct: 127 GDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRIIEFVEKPADGP 186 Query: 164 PKSSFAVTGIYFYDQEV 180 P +S A GIY ++ ++ Sbjct: 187 PSNSLASMGIYIFNTDL 203 >gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214 Score = 72.3 bits (178), Expect = 1e-13 Identities = 24/57 (42%), Positives = 39/57 (68%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRD 57 + ++LAGG G+RL PLTD + K +LP+ NKPMI+YP+ L AG +++++ + Sbjct: 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEE 57 >gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221 Score = 71.4 bits (176), Expect = 2e-13 Identities = 58/242 (23%), Positives = 93/242 (38%), Gaps = 31/242 (12%) Query: 2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILI-ISTPRDLPV 60 K ++LA G GTR+RPLTD K ++P+ KP+I + + L AGIR I++ D Sbjct: 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQ-- 58 Query: 61 LKEFLGSGEKWG--VQFSYIEQLVPA----GLAQSYILGAEFIGDSSSVLILGDNV-FYG 113 ++ LG ++G + S E G+ + +GD +++ GD + Sbjct: 59 IEAHLGD-SRFGLRITISD-EPDELLETGGGIKK----ALPLLGDEPFLVVNGDILWDGD 112 Query: 114 SDISDIFHKARARRNSATVVG--CHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVT 171 + H R + N G +D+ + + + F T Sbjct: 113 LAPLLLLHAWRMDALLLLLPLVRNPGHNG--VGDFSLDADGR---LRRGGGGAVAPFTFT 167 Query: 172 GIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLL 231 GI E+ I P G+ + + + G L WFD GTPE LL Sbjct: 168 GIQILSPELF---AGIPP---GKFSLNPLWDRAIAAGRLFGLVYD--GLWFDVGTPERLL 219 Query: 232 DT 233 Sbjct: 220 AA 221 >gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216 Score = 65.7 bits (161), Expect = 2e-11 Identities = 42/188 (22%), Positives = 71/188 (37%), Gaps = 23/188 (12%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 + +VLA G G+R PLT + K +LP+ N P+I Y + L AG+ E+ ++ + Sbjct: 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAI 60 Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSS------VLILGDNVFYGS 114 ++ L S KW S + V A + D +L+ D + Sbjct: 61 IEHLLKS--KWSSLSSKMIVDVITSDLCESAGDALRLRDIRGLIRSDFLLLSCD-LVSNI 117 Query: 115 DISDIFHKARA--RRNSATVVGCHVQNPQR---------YGVVEVDSSNQA---ISIEEK 160 +S++ + R + AT+ P V+ VDS Q + EE Sbjct: 118 PLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEED 177 Query: 161 PNNPKSSF 168 + Sbjct: 178 LDEDLELI 185 >gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229 Score = 63.7 bits (156), Expect = 6e-11 Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 30/221 (13%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREI-LIISTPRDLPVLK 62 ++LA G GTR++ +DL K + P+ KPM+ + + G I +++ + V K Sbjct: 2 VILAAGKGTRMK--SDL-PKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQ-VKK 57 Query: 63 EFLGSGEKWGVQFSYIEQLVPAG-LAQSYILGAEFIGDSSSVLILGDNVFYG-------S 114 ++ +Q EQL + Q+ +F GD VL+L YG Sbjct: 58 ALANPNVEFVLQ---EEQLGTGHAVKQALPALKDFEGD---VLVL-----YGDVPLITPE 106 Query: 115 DISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISI-EEKPNNP---KSSFAV 170 + + R TV+ +++P YG + D + + + I EEK Sbjct: 107 TLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGNGKVLRIVEEKDATEEEKAIREVN 166 Query: 171 TGIYFYDQEVVNIA-RNIRPS-ARGELEITDVNSYYLDKGL 209 GIY +D E + A + + A+GE +TD+ + + GL Sbjct: 167 AGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGL 207 >gnl|CDD|36673 KOG1460, KOG1460, KOG1460, GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism, Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones]. Length = 407 Score = 63.0 bits (153), Expect = 9e-11 Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 10/196 (5%) Query: 1 MKGIVLAGG--SGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMD-AGIREILIISTPRD 57 +K ++L GG GTR RPL+ + K + PI PMI++ +S +G+ EIL++ + Sbjct: 3 VKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEE 62 Query: 58 LPVLKEFLGS-GEKWGVQFSYIEQLVPAGLAQSYILGAEFI--GDSSSVLILGDNVFYGS 114 V +F+ + +++ V Y+ + P G A + I G S+V +L +V Sbjct: 63 -RVFTDFISAIQQEFKVPVRYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSF 121 Query: 115 DISDIFHKARARRNSATVVGCHVQNPQ--RYG-VVEVDSSNQAISIEEKPNNPKSSFAVT 171 + D+ R T++ V Q +G +VE S+ + + EKP+ S Sbjct: 122 PLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFVSDIINC 181 Query: 172 GIYFYDQEVVNIARNI 187 G+Y + E+ N + Sbjct: 182 GVYLFTPEIFNAIAEV 197 >gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229 Score = 62.2 bits (152), Expect = 2e-10 Identities = 53/235 (22%), Positives = 91/235 (38%), Gaps = 19/235 (8%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63 I+LA G G+RLRPLT+ K +L I KP++ + TL +AGI +I+I++ + ++E Sbjct: 2 IILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKK-EQIEE 60 Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLIL-GDNVFYGSDISDIFHK 122 L ++F Y S L +F+ + L+L GD VF I + Sbjct: 61 LLKKYPN--IKFVYNPDYAETNNIYSLYLARDFLDE--DFLLLEGDVVFD----PSILER 112 Query: 123 ARA--RRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVT-GIYFYD-- 177 + N+ V + Y D+ I K N + GI + Sbjct: 113 LLSSPADNAILVDKKTKEWEDEYVKDLDDAGVLLGII-SKAKNLEEIQGEYVGISKFSPE 171 Query: 178 --QEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESL 230 + + + R L D + + + V+ + W++ E L Sbjct: 172 DADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDI-SDGFWYEIDDLEDL 225 >gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257 Score = 60.3 bits (147), Expect = 5e-10 Identities = 52/224 (23%), Positives = 101/224 (45%), Gaps = 18/224 (8%) Query: 3 GIVLAGG--SGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMD-AGIREILIISTPRDLP 59 ++L GG GTR RPL+ + K + P+ KPMI++ + ++E+L+I + Sbjct: 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPES- 59 Query: 60 VLKEFLGSG-EKWGVQFSYIEQLVPAGLA------QSYILGAEFIGDSSSVLILGDNVFY 112 V +F+ +++ V Y+++ P G A + IL G+ S+ +L +V Sbjct: 60 VFSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILA----GNPSAFFVLNADVCC 115 Query: 113 GSDISDIFHKARARRNSATVVGCHVQNPQ--RYG-VVEVDSSNQAISIEEKPNNPKSSFA 169 + ++ + S T++G Q YG +VE S+ + + EKP S Sbjct: 116 DFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFVSDLI 175 Query: 170 VTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVE 213 G+Y + E+ + + S + E ++ D N+ ++ +E Sbjct: 176 NCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLE 219 >gnl|CDD|36675 KOG1462, KOG1462, KOG1462, Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]. Length = 433 Score = 58.4 bits (141), Expect = 2e-09 Identities = 31/79 (39%), Positives = 47/79 (59%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 + +VLAGG GTR+ +T L K +LPI NKPMI YP+++L AG EI+++ + Sbjct: 10 FQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLD 69 Query: 61 LKEFLGSGEKWGVQFSYIE 79 ++ LGS + Y+E Sbjct: 70 IESALGSNIDLKKRPDYVE 88 >gnl|CDD|31400 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]. Length = 460 Score = 57.9 bits (140), Expect = 3e-09 Identities = 51/223 (22%), Positives = 97/223 (43%), Gaps = 26/223 (11%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREI-LIISTPRDLP 59 + ++LA G GTR++ +DL K + P+ KPM+ + + G +I +++ + Sbjct: 3 LSAVILAAGKGTRMK--SDL-PKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQ- 58 Query: 60 VLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYG------ 113 V + E+ V+F + Q G + + + D +L V YG Sbjct: 59 VREAL---AERDDVEF--VLQEEQLGTGHAVLQALPALADDYDGDVL---VLYGDVPLIT 110 Query: 114 -SDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISI-EEKPNNP---KSSF 168 + ++ A +ATV+ + +P YG + D + + +I EEK + + Sbjct: 111 AETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKE 170 Query: 169 AVTGIYFYDQEVVNIA-RNIRPS-ARGELEITDVNSYYLDKGL 209 TGIY +D + A + + A+GE +TDV + ++G Sbjct: 171 INTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGE 213 >gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200 Score = 57.6 bits (140), Expect = 4e-09 Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 19/147 (12%) Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPI---YNKPMIYYPVSTLMDAGIREILIISTPRDLP 59 I+LAGG GTRL PLT +K +P Y +I +P+S ++++GIR + ++ T Sbjct: 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYR--LIDFPLSNMVNSGIRNVGVL-TQYKSR 57 Query: 60 VLKEFLGSGEKW-------GVQFSYIEQLVP----AGLAQSYILGAEFIGDSSS--VLIL 106 L + LGSG++W G+ +Q G A + ++I S VLIL Sbjct: 58 SLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLIL 117 Query: 107 GDNVFYGSDISDIFHKARARRNSATVV 133 + Y D ++ TVV Sbjct: 118 SGDHIYNMDYREMLDFHIESGADITVV 144 >gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. Length = 253 Score = 56.4 bits (137), Expect = 8e-09 Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 56/195 (28%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDA----GIRE-ILIISTPRDL 58 ++LAGG GTRL T+L K M+ I +P++++ +M G + IL + Sbjct: 2 VILAGGLGTRLSEETELKPKPMVEIGGRPILWH----IMKIYSHYGHNDFILCLGYKGH- 56 Query: 59 PVLKEF--------------LGSGEKWGVQF--SYIEQ----LVPAGLAQSYILG----- 93 V+KE+ LG+ ++ S IE LV GL + G Sbjct: 57 -VIKEYFLNYFLHNSDVTIDLGTNR---IELHNSDIEDWKVTLVDTGLN-TMTGGRLKRV 111 Query: 94 AEFIGDSSSVLILGDNVFYGSDISDI-------FHKARARRNSATVVGCHVQNPQRYGVV 146 ++GD + ++ YG +SD+ FH++ + ATV V P R+G + Sbjct: 112 RRYLGDDETFMLT-----YGDGVSDVNINALIEFHRSHGK--LATVTA--VHPPGRFGEL 162 Query: 147 EVDSSNQAISIEEKP 161 ++D Q S EKP Sbjct: 163 DLDDDGQVTSFTEKP 177 >gnl|CDD|34365 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]. Length = 231 Score = 54.9 bits (132), Expect = 3e-08 Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 20/164 (12%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 M I+LA G G+R PLT K +L + +P+I + L +AGI +I I+ Sbjct: 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVG-----Y 55 Query: 61 LKE-FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDI 119 LKE F +K+ V Y + S L +F+ + + +I DN +I Sbjct: 56 LKEQFEYLKDKYDVTLVYNPKYREYNNIYSLYLARDFLNN--TYIIDSDNYLT----KNI 109 Query: 120 FHKARARRNSATVV--GCHVQNPQRYGV------VEVDSSNQAI 155 F + V G + Y V++ N I Sbjct: 110 FLTKESHSKYFAVYRSGKTNEWLLIYNSDGKITRVDIGGLNGYI 153 >gnl|CDD|31406 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]. Length = 239 Score = 54.5 bits (131), Expect = 3e-08 Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 36/242 (14%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 MK ++LA G G+RL P + K ++ + + +IY + L AGI E ++++ + Sbjct: 4 MKAVILAAGFGSRLGPD---IPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADL 60 Query: 61 LKEFLGSGEKWGVQFSYIEQLVP------AGLAQSYILGAEFIGDSSSVLILGDNVFYGS 114 ++EFL ++ + ++V S +L +++ +++ + Y Sbjct: 61 VEEFLK-------KYPFNAKIVINSDYEKTNTGYSLLLAKDYMDG--RFILVMSDHVYEP 111 Query: 115 DISDIFHKARARRNSATVVGCHVQNPQRYGVVEV----DSSNQAISIEEKPNNPKSSFAV 170 I + +A + P+ GV E D + + I + Sbjct: 112 SILERLLEAPGEGLIV------DRRPRYVGVEEATKVKDEGGRIVEIGKDLTEY--DGED 163 Query: 171 TGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLRE--GSAWFDAGTPE 228 GI+ + E D + GL E G W + TPE Sbjct: 164 IGIFILSDSIFEDTYE----LLVERSEYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPE 219 Query: 229 SL 230 L Sbjct: 220 DL 221 >gnl|CDD|36674 KOG1461, KOG1461, KOG1461, Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]. Length = 673 Score = 53.8 bits (129), Expect = 6e-08 Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 17/179 (9%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63 I+LA TR RPLT + +LP+ N PMI Y + L AG+ E+ + + +++ Sbjct: 28 ILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEY 87 Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQS------YILGAEFIGDSSSVLILGDNVFYGSDIS 117 S +W + S+I + +G ++S I + I + +++ + + Sbjct: 88 IEKS--EWYLPMSFIVVTICSGESRSVGDAMRDIDEKQLI--TGDFILVSGDTVSNMPLR 143 Query: 118 DI--FHKARARRNSATVVG-CHVQNPQRYG----VVEVDSSNQAISIEEKPNNPKSSFA 169 ++ H+ R + + ++ ++ R V+ VDS + +K K Sbjct: 144 NVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVVIAVDSRTSRLLHYQKCVREKHDIQ 202 >gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 217 Score = 46.4 bits (111), Expect = 1e-05 Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 36/192 (18%) Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILII-STPRDLPVL 61 +VLA R RPLT + +LP+ N P+I Y + L G+ E+ + + D + Sbjct: 3 AVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQ--I 60 Query: 62 KEFLGSGEKWGVQFSY-IEQLVPAGLAQSYILGAEFIGD------------SSSVLILGD 108 KE++ + + S I ++ + +S +GD +L+ GD Sbjct: 61 KEYIEKSKWSKPKSSLMIVIIIMSEDCRS-------LGDALRDLDAKGLIRGDFILVSGD 113 Query: 109 NVFYGSDISDIFHKARARR-----NSATVV--GCHVQNPQRYG----VVEVD-SSNQAIS 156 V D+ +I + + RR T+V + R V+ VD +++ + Sbjct: 114 VV-SNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTSRLLH 172 Query: 157 IEEKPNNPKSSF 168 EE P + S Sbjct: 173 YEELPGSKYRSI 184 >gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. Length = 218 Score = 45.6 bits (109), Expect = 2e-05 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVLK 62 I+LA GSG+R+ KQ L + KP++ + + + I EI+++ P D+ + K Sbjct: 4 IILAAGSGSRMGADI---PKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAK 60 Query: 63 E 63 E Sbjct: 61 E 61 >gnl|CDD|133026 cd04183, GT2_BcE_like, GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Length = 231 Score = 44.6 bits (106), Expect = 3e-05 Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 7/175 (4%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63 I+ G G+R + K ++ + KPMI + + +L + I RD K Sbjct: 2 IIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFIC--RDEHNTKF 59 Query: 64 FLGSGEKWGVQFSYIEQL--VPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFH 121 L K + + +L G A + +L A+ I + +LI + SD+ Sbjct: 60 HLDESLKLLAPNATVVELDGETLGAACTVLLAADLIDNDDPLLIFNCDQIVESDLLAFLA 119 Query: 122 KARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFY 176 R R V+ +P R+ V++D + + I EK P S A G+Y++ Sbjct: 120 AFRERDLDGGVLTFFSSHP-RWSYVKLDENGRVIETAEK--EPISDLATAGLYYF 171 >gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 186 Score = 44.5 bits (106), Expect = 4e-05 Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 12/136 (8%) Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62 I+LA G +R+ +K +LP+ KP++ + + + AG+ ++++ V Sbjct: 3 AIILAAGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRA 57 Query: 63 EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFI-GDSSSVLI-LGDNVFYGSDISDIF 120 G + + E G++ S G E + D+ +VLI L D ++ Sbjct: 58 ALAGLPVVVVINPDWEE-----GMSSSLAAGLEALPADADAVLILLADQPLVTAETLRAL 112 Query: 121 HKARARRNSATVVGCH 136 A + V + Sbjct: 113 IDAFREDGAGIVAPVY 128 >gnl|CDD|31404 COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]. Length = 230 Score = 43.3 bits (102), Expect = 8e-05 Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVL 61 ++LA G G+R+ + KQ L + +P++ + + +++ I EI+++ +P D P Sbjct: 7 AVILAAGFGSRMGNP---VPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYF 63 Query: 62 KEFL 65 ++ Sbjct: 64 EKLP 67 >gnl|CDD|32251 COG2068, COG2068, Uncharacterized MobA-related protein [General function prediction only]. Length = 199 Score = 43.0 bits (101), Expect = 1e-04 Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 13/139 (9%) Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62 +VLA G +R+ K + P+ KP++ T + AG+ +++++ R ++ Sbjct: 8 AVVLAAGRSSRMGQ-----PKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVE 62 Query: 63 EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSS--SVLILGDNVFYGSDISDIF 120 L GV GL+ S G VL+LGD + Sbjct: 63 ALLAQL---GVTVVVNPD-YAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPA--TVR 116 Query: 121 HKARARRNSATVVGCHVQN 139 A R V Sbjct: 117 RLIAAFRARGAAVRPVYGG 135 >gnl|CDD|32447 COG2266, COG2266, GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]. Length = 177 Score = 41.4 bits (97), Expect = 3e-04 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 15/87 (17%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 M I++AGG GTR+ K +L + KP+I + L + EI++ +P P Sbjct: 1 MMAIIMAGGRGTRM----GRPEKPLLEVCGKPLIDRVLEALRKI-VDEIIVAISP-HTPK 54 Query: 61 LKEFLGSGEKWGVQF------SYIEQL 81 KE+L E GV+ Y+E L Sbjct: 55 TKEYL---ESVGVKVIETPGEGYVEDL 78 >gnl|CDD|133003 cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. Length = 274 Score = 39.9 bits (94), Expect = 0.001 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%) Query: 1 MKGIVLAGGSGTRLRPL-TDLLSKQMLPIY-NKPMI 34 + ++LAGGSGTRL PL + KQ L ++ +K ++ Sbjct: 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLL 36 >gnl|CDD|31089 COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]. Length = 192 Score = 38.4 bits (89), Expect = 0.002 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 8/64 (12%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 M G++LAGG R+R K +LP+ +P+I + + L ++++IS R+ Sbjct: 5 MTGVILAGGKSRRMRD------KALLPLNGRPLIEHVIDRL--RPQVDVVVISANRNQGR 56 Query: 61 LKEF 64 EF Sbjct: 57 YAEF 60 >gnl|CDD|31178 COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]. Length = 333 Score = 34.4 bits (79), Expect = 0.033 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Query: 1 MKGIVLAGGSGTRLRPL-TDLLSKQMLPIY-NKPMIYYPVSTLMD-AGIREILIIS 53 M ++LAGGSG+RL PL KQ L ++ + ++ V L I E L+++ Sbjct: 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVT 57 >gnl|CDD|133000 cd02503, MobA, MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. Length = 181 Score = 34.5 bits (80), Expect = 0.041 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 9/65 (13%) Query: 1 MKGIVLAGGSGTRL-RPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLP 59 + G++LAGG R+ K +L + KP++ + + L + + ++IS RD Sbjct: 1 ITGVILAGGKSRRMGGD------KALLELGGKPLLEHVLERL--KPLVDEVVISANRDQE 52 Query: 60 VLKEF 64 Sbjct: 53 RYALL 57 >gnl|CDD|31280 COG1083, NeuA, CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]. Length = 228 Score = 31.8 bits (72), Expect = 0.22 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 21/110 (19%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63 I+ A G ++ +K + KP+I Y + +++ + + ++IS+ + E Sbjct: 7 IIPARGGSKGIK------NKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSE-----E 55 Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQSY-------ILGAEFIGDSSSVLIL 106 L +K+G + P LA + E LIL Sbjct: 56 ILEEAKKYGAKVFLKR---PKELASDRASTIDAALHALESFNIDEDTLIL 102 >gnl|CDD|32046 COG1861, SpsF, Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]. Length = 241 Score = 31.0 bits (70), Expect = 0.34 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 10/116 (8%) Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62 I+ A TRL K +LP+ +PMI Y + + + + ++++T D Sbjct: 6 VIIQARMGSTRLP------GKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATS-DKEEDD 58 Query: 63 EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISD 118 G Y+ + + Q +I+ + V + GDN F ++ D Sbjct: 59 ALEEVCRSHGF---YVFRGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVD 111 >gnl|CDD|145475 pfam02348, CTP_transf_3, Cytidylyltransferase. This family consists of two main Cytidylyltransferase activities: 1) 3-deoxy-manno-octulosonate cytidylyltransferase,, EC:2.7.7.38 catalysing the reaction:- CTP + 3-deoxy-D-manno-octulosonate <=> diphosphate + CMP-3-deoxy-D-manno-octulosonate, 2) acylneuraminate cytidylyltransferase EC:2.7.7.43,, catalysing the reaction:- CTP + N-acylneuraminate <=> diphosphate + CMP-N-acylneuraminate. NeuAc cytydilyltransferase of Mannheimia haemolytica has been characterized describing kinetics and regulation by substrate charge, energetic charge and amino-sugar demand. Length = 197 Score = 30.0 bits (68), Expect = 0.90 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 6/52 (11%) Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIIST 54 I+ A RL K +L + KP+I + + + + + ++++T Sbjct: 2 AIIPARSGSKRLP------GKNLLKLGGKPLIARVIEAALQSKLFDKVVVAT 47 >gnl|CDD|107344 cd06349, PBP1_ABC_ligand_binding_like_14, Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. Length = 340 Score = 28.9 bits (65), Expect = 1.7 Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 20/137 (14%) Query: 98 GDSSSVLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISI 157 V IL N +G +DIF KA + V V + + Sbjct: 133 LGFKKVAILSVNTDWGRTSADIFVKAAEKLGGQVVA--------HEEYVPGEKDFRPTIT 184 Query: 158 EEKPNNPKSSFAVTGIYFYDQEVVNIARNIRPSARG-ELEITDVNSYY----LDKGLLAV 212 + NP + ++ Y + IAR R A G ++ + +S Y ++ G AV Sbjct: 185 RLRDANPDAIILIS----YYNDGAPIARQAR--AVGLDIPVVASSSVYSPKFIELGGDAV 238 Query: 213 EFLREGSAWF-DAGTPE 228 E + +A+F PE Sbjct: 239 EGVYTPTAFFPGDPRPE 255 >gnl|CDD|177015 CHL00076, chlB, photochlorophyllide reductase subunit B. Length = 513 Score = 28.8 bits (65), Expect = 1.8 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 204 YLDKGLLAVEFL-REGSAWFDAGTPESLLDTAVFVRNIENRLGLYVACPEEIAYRHD-FI 261 Y + GL+ ++L +E + + TP ++DTA +R I+ L + E ++ +I Sbjct: 222 YREVGLMTAKYLEKEFGMPYISTTPMGIVDTAECIRQIQKILNKLASDILEKKVDYEKYI 281 Query: 262 NESQFF 267 ++ F Sbjct: 282 DQQTRF 287 >gnl|CDD|144061 pfam00328, Acid_phosphat_A, Histidine acid phosphatase. Length = 330 Score = 28.6 bits (64), Expect = 2.0 Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 10/64 (15%) Query: 36 YPVSTL---MDAGIREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYIL 92 P L ++A ++L L WG QL P G Q++ L Sbjct: 15 TPTKKLPKDLEAWPFKLLSAKHKFGKYDFLNKLQWPLGWG-------QLTPEGRQQAFEL 67 Query: 93 GAEF 96 G Sbjct: 68 GRYL 71 >gnl|CDD|32607 COG2710, NifD, Nitrogenase molybdenum-iron protein, alpha and beta chains [Energy production and conversion]. Length = 456 Score = 27.3 bits (60), Expect = 5.4 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 6/70 (8%) Query: 187 IRPSARGELEITDVNSYYLDKGLLAVEFLRE--GSAWFDAGTPESLLDTAVFVRNIENRL 244 IR + +L + G +L E G W + +P + +T F+RN+ L Sbjct: 227 IRRAPNAKLNL----VLCSRSGRYLARYLEERFGIPWIEVPSPLGIENTDRFLRNLAKLL 282 Query: 245 GLYVACPEEI 254 G PEE+ Sbjct: 283 GKIEEIPEEV 292 >gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap.The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 283 Score = 27.0 bits (60), Expect = 5.9 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 6/50 (12%) Query: 74 QFSYIEQLVPAGLAQ----SYILGAEFIGDSSSVLILG--DNVFYGSDIS 117 S+ +QL GL S+ LG + G + L G D Y D++ Sbjct: 121 VPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLT 170 >gnl|CDD|143916 pfam00148, Oxidored_nitro, Nitrogenase component 1 type Oxidoreductase. Length = 398 Score = 26.4 bits (59), Expect = 8.5 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Query: 208 GLLAVEFLRE--GSAWFDAGTPESLLDTAVFVRNIENRLGLYVACPEEIA 255 G A ++L E G + + G+P + T F+R + LG VA PE IA Sbjct: 205 GRYAAKYLEERFGVPYIELGSPIGIEATDRFLRALAELLGKEVA-PEVIA 253 >gnl|CDD|107359 cd06364, PBP1_CaSR, Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calcium metabolism. Additionally, the family C GPCRs includes at least two receptors with broad-spectrum amino acid-sensing properties: GPRC6A which recognizes basic and various aliphatic amino acids, its gold-fish homolog the 5.24 chemoreceptor, and a specific taste receptor (T1R) which responds to aliphatic, polar, charged, and branched amino acids, but not to aromatic amino acids. Length = 510 Score = 26.5 bits (58), Expect = 8.6 Identities = 14/58 (24%), Positives = 22/58 (37%) Query: 157 IEEKPNNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEF 214 +E+ P N G + N + RP G+ I V + YLD L + + Sbjct: 341 LEDSPKNALPVDTFLGHEESGDDSENGSTAFRPLCTGDENIASVETPYLDYTHLRISY 398 >gnl|CDD|133036 cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. Length = 323 Score = 26.4 bits (59), Expect = 8.6 Identities = 8/11 (72%), Positives = 10/11 (90%) Query: 4 IVLAGGSGTRL 14 ++LAGG GTRL Sbjct: 19 LLLAGGQGTRL 29 >gnl|CDD|38785 KOG3578, KOG3578, KOG3578, Uncharacterized conserved protein [Function unknown]. Length = 1058 Score = 26.6 bits (58), Expect = 8.8 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 7/128 (5%) Query: 165 KSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDA 224 F V + D+E I + R LEI N+ + + A+ F + D Sbjct: 773 VQKFYVFSTFVPDEE---IKSRLLKEHRFSLEIKAPNNAKVYPRMRAIAFRKYIRVLGDP 829 Query: 225 GTPESLLD-TAVFVRNIENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLR 283 +S +D + + N +G YV + + +F F + S L++ Sbjct: 830 DLGQSYIDEFRAIIDQLGNAVG-YVRLLQAGSKNANFFT--HFVTNRFYCYFSQGYLFIE 886 Query: 284 QVVEKKKR 291 + + KKR Sbjct: 887 EATDSKKR 894 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.320 0.139 0.404 Gapped Lambda K H 0.267 0.0683 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,650,819 Number of extensions: 197249 Number of successful extensions: 528 Number of sequences better than 10.0: 1 Number of HSP's gapped: 482 Number of HSP's successfully gapped: 61 Length of query: 292 Length of database: 6,263,737 Length adjustment: 93 Effective length of query: 199 Effective length of database: 4,254,100 Effective search space: 846565900 Effective search space used: 846565900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (25.8 bits)