RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780922|ref|YP_003065335.1| glucose-1-phosphate
thymidylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (292 letters)



>gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of
           glucose-1-phosphate thymidylyltransferase.  This family
           is the short form of glucose-1-phosphate
           thymidylyltransferase.  Glucose-1-phosphate
           thymidylyltransferase catalyses the formation of
           dTDP-glucose, from dTTP and glucose 1-phosphate. It is
           the first enzyme in the biosynthesis of dTDP-L-rhamnose,
           a cell wall constituent and a feedback inhibitor of the
           enzyme.There are two forms of   Glucose-1-phosphate
           thymidylyltransferase in bacteria and archeae; short
           form and long form. The homotetrameric, feedback
           inhibited short form is found in numerous bacterial
           species that produce dTDP-L-rhamnose. The long form,
           which has an extra 50 amino acids c-terminal, is found
           in many species for which it serves as a
           sugar-activating enzyme for antibiotic biosynthesis and
           or other, unknown pathways, and in which dTDP-L-rhamnose
           is not necessarily produced.
          Length = 240

 Score =  394 bits (1014), Expect = e-110
 Identities = 148/240 (61%), Positives = 185/240 (77%)

Query: 1   MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
           MKGI+LAGGSGTRL PLT ++SKQ+LP+Y+KPMIYYP+STLM AGIREILIISTP DLP+
Sbjct: 1   MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPL 60

Query: 61  LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120
            KE LG G   G++ +Y  Q  P GLAQ++I+G EFIGD    LILGDN+FYG  +S I 
Sbjct: 61  FKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIGDDPVCLILGDNIFYGQGLSPIL 120

Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180
            +A A++  ATV G  V +P+RYGVVE D + + +SIEEKP  PKS++AVTG+YFYD +V
Sbjct: 121 QRAAAQKEGATVFGYEVNDPERYGVVEFDENGRVLSIEEKPKKPKSNYAVTGLYFYDNDV 180

Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240
             IA+ ++PSARGELEITDVN+ YL+KG L+VE L  G AW D GT ESLL+ + FV+ I
Sbjct: 181 FEIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFVQTI 240


>gnl|CDD|31402 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope
           biogenesis, outer membrane].
          Length = 286

 Score =  346 bits (890), Expect = 3e-96
 Identities = 140/289 (48%), Positives = 183/289 (63%), Gaps = 3/289 (1%)

Query: 1   MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
           MKG++LAGGSGTRLRPLT ++ KQ+LP+Y+KPMIYYP+ TLM AGIR+ILI+  P D P 
Sbjct: 1   MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPT 60

Query: 61  LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120
            KE LG G  +GV  +Y  Q  P GLA + ++  +F+GD   VL LGDN+F    +S++ 
Sbjct: 61  FKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAEDFVGDDDFVLYLGDNIFQD-GLSELL 119

Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180
                  + AT++   V +P RYGVVE D   + I +EEKP  PKS+ AVTG+YFYD  V
Sbjct: 120 EHFAEEGSGATILLYEVDDPSRYGVVEFDEDGKVIGLEEKPKEPKSNLAVTGLYFYDPSV 179

Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240
               + I+PSARGELEITD    Y++KG L V  L  G  W D GTPESLL+   FVR +
Sbjct: 180 FEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIRG-WWLDTGTPESLLEANNFVRTV 238

Query: 241 ENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKK 289
             R G  +ACPEEIA+   +I+      L      S YG YL +++  +
Sbjct: 239 SKRQGFKIACPEEIAWN-GWIDGPGLIGLASQLEKSGYGQYLLELLRAR 286


>gnl|CDD|144176 pfam00483, NTP_transferase, Nucleotidyl transferase.  This family
           includes a wide range of enzymes which transfer
           nucleotides onto phosphosugars.
          Length = 247

 Score =  254 bits (651), Expect = 2e-68
 Identities = 100/247 (40%), Positives = 144/247 (58%), Gaps = 8/247 (3%)

Query: 2   KGIVLAGGSGTRLRPLTDLLSKQMLPIYNK-PMIYYPVSTLMDAGIREILIISTPRDLPV 60
           K I+LAGGSGTRL PLT  L+K ++P+ +K PMI Y +S LM+AGIRE ++I T     +
Sbjct: 1   KAIILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFL 60

Query: 61  LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSS--VLILGDNVFYGSDISD 118
           + E LG G K+G+Q +Y  Q  P G A +  L A+F+GD     VL+LG +  Y  D  +
Sbjct: 61  VAEQLGDGSKFGLQVTYALQPEPRGTAPAVALAADFLGDDDPELVLVLGGDHIYRMDFEE 120

Query: 119 I--FHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPK-SSFAVTGIYF 175
                +A+A   + T     V++P  YGV+E D + + I   EKP+ PK S++A  GIYF
Sbjct: 121 AVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDENGRVIRFVEKPDLPKASNYASMGIYF 180

Query: 176 YDQEVV-NIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSA-WFDAGTPESLLDT 233
           ++  V   +A+ ++  ARGE EITD     L+ G L + FL  G A W D GT +SL + 
Sbjct: 181 FNSGVFLFLAKYLKELARGEDEITDAIPAALEDGDLDLAFLFRGYAYWSDVGTWDSLWEA 240

Query: 234 AVFVRNI 240
            + +   
Sbjct: 241 NLKLLTG 247


>gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of
           glucose-1-phosphate thymidylyltransferase.  This family
           is the long form of Glucose-1-phosphate
           thymidylyltransferase.  Glucose-1-phosphate
           thymidylyltransferase catalyses the formation of
           dTDP-glucose, from dTTP and glucose 1-phosphate. It is
           the first enzyme in the biosynthesis of dTDP-L-rhamnose,
           a cell wall constituent and a feedback inhibitor of the
           enzyme.There are two forms of   Glucose-1-phosphate
           thymidylyltransferase in bacteria and archeae; short
           form and long form.  The long form, which has an extra
           50 amino acids c-terminal, is found in many species for
           which it serves as a sugar-activating enzyme for
           antibiotic biosynthesis and or other, unknown pathways,
           and in which dTDP-L-rhamnose is not necessarily
           produced.The long from enzymes also have a left-handed
           parallel helix domain at the c-terminus, whereas, th
           eshort form enzymes do not have this domain. The
           homotetrameric, feedback inhibited short form is found
           in numerous bacterial species that produce
           dTDP-L-rhamnose.
          Length = 236

 Score =  225 bits (575), Expect = 2e-59
 Identities = 88/233 (37%), Positives = 136/233 (58%), Gaps = 6/233 (2%)

Query: 1   MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREI-LIISTPRDLP 59
           MKG++LAGG GTRLRPLT    KQ++P+  KP+I Y +  L +AGI +I +++    +  
Sbjct: 1   MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEE- 59

Query: 60  VLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDI 119
            +KE LG G ++GV+ +YI Q  P GLA + +   +F+GD   V+ LGDN+     IS +
Sbjct: 60  -IKEALGDGSRFGVRITYILQEEPLGLAHAVLAARDFLGDEPFVVYLGDNLIQE-GISPL 117

Query: 120 FHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQE 179
                     A+++   V++P+R+GV  VD   + + + EKP  P S+ A+ G+Y +   
Sbjct: 118 VRDFLEEDADASILLAEVEDPRRFGVAVVD-DGRIVRLVEKPKEPPSNLALVGVYAFTPA 176

Query: 180 VVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLD 232
           + +    ++PS RGELEITD   + +D+G      +  G  W D GTPE LL+
Sbjct: 177 IFDAISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTG-WWKDTGTPEDLLE 228


>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of
           nucleotides onto phosphosugars.  Nucleotidyltransferases
           transfer nucleotides onto phosphosugars.  The enzyme
           family includes Alpha-D-Glucose-1-Phosphate
           Cytidylyltransferase, Mannose-1-phosphate
           guanyltransferase, and Glucose-1-phosphate
           thymidylyltransferase. The products are activated sugars
           that are precursors for synthesis of lipopolysaccharide,
           glycolipids and polysaccharides.
          Length = 217

 Score =  193 bits (493), Expect = 5e-50
 Identities = 77/223 (34%), Positives = 119/223 (53%), Gaps = 6/223 (2%)

Query: 3   GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62
            ++LA G GTRLRPLTD   K +LPI  KP++ Y +  L  AGI EI+++        ++
Sbjct: 1   AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLG-EQIE 59

Query: 63  EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFHK 122
           E+ G G K+GV   Y+ Q  P G A +     +F+GD   +++ GD +    D+S++   
Sbjct: 60  EYFGDGSKFGVNIEYVVQEEPLGTAGAVRNAEDFLGDDDFLVVNGDVLTD-LDLSELLRF 118

Query: 123 ARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVVN 182
            R +   AT+    V++P RYGVVE+D   +     EKP  P+S+ A  GIY ++ E+++
Sbjct: 119 HREKGADATIAVKEVEDPSRYGVVELDDDGRVTRFVEKPTLPESNLANAGIYIFEPEILD 178

Query: 183 IARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAG 225
               I P  RGE E+TD     +++G +          W D G
Sbjct: 179 YIPEILP--RGEDELTDAIPLLIEEGKVYG--YPVDGYWLDIG 217


>gnl|CDD|31401 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase
           involved in lipopolysaccharide biosynthesis/translation
           initiation factor 2B, gamma/epsilon subunits
           (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis,
           outer membrane / Translation, ribosomal structure and
           biogenesis].
          Length = 358

 Score =  140 bits (355), Expect = 3e-34
 Identities = 76/235 (32%), Positives = 117/235 (49%), Gaps = 10/235 (4%)

Query: 1   MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
           MK ++LAGG GTRLRPLTD   K +LPI  KP+I Y +  L  AG+ EI+++        
Sbjct: 2   MKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLG-EQ 60

Query: 61  LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120
           ++E+ G GE  GV+ +Y+ +  P G A +     + +G    +++ GD +    D+S++ 
Sbjct: 61  IEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDLLGGDDFLVLNGDVLT-DLDLSELL 119

Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAI-SIEEKP--NNPKSSFAVTGIYFYD 177
              + +   AT+    V +P  +GVVE D  +  +    EKP    P S+    GIY +D
Sbjct: 120 EFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAGIYIFD 179

Query: 178 QEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLD 232
            EV +           E    ++      KG     ++ EG  W D GTPE LL+
Sbjct: 180 PEVFDYIEKGERFDFEE----ELLPALAAKGEDVYGYVFEGY-WLDIGTPEDLLE 229


>gnl|CDD|31403 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope
           biogenesis, outer membrane].
          Length = 291

 Score =  110 bits (277), Expect = 5e-25
 Identities = 66/269 (24%), Positives = 111/269 (41%), Gaps = 38/269 (14%)

Query: 1   MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDL-- 58
            K ++ A G GTR  P T  + K+MLPI +KP+I Y V   + AGI EILI++       
Sbjct: 5   RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAI 64

Query: 59  -------PVLKEFLGSGEKW-----------GVQFSYIEQLVPAGLAQSYILGAEFIGDS 100
                    L+  L    K             V  S++ Q  P GL  + +    F+GD 
Sbjct: 65  EDHFDTSYELENTLEKRGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGDE 124

Query: 101 SSVLILGDNVFYGS-----DISDIFHKARARRNSATVVGCHVQNPQRYGVVEV-----DS 150
              ++L D++          + +++       +   V     ++  +YGV++        
Sbjct: 125 PFAVLLPDDLVDSEKPCLKQMIELY--EETGGSVIGVEEVPPEDVSKYGVIDPGEPVEKG 182

Query: 151 SNQAISIEEKP--NNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITD-VNSYYLDK 207
             +   + EKP      S+ A+ G Y    E+ +I    +P A GE+++TD +      +
Sbjct: 183 VYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQLTDAIKKLLKKE 242

Query: 208 GLLAVEFLREGSAWFDAGTPESLLDTAVF 236
            +LA  F  EG   +D G+    +   V 
Sbjct: 243 PVLAYVF--EGKR-YDCGSKLGYIKANVE 268


>gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member
           of the nucleotidyl transferase family.  This is a
           subfamily of nucleotidyl transferases. Nucleotidyl
           transferases transfer nucleotides onto phosphosugars.
           The activated sugars are precursors for synthesis of
           lipopolysaccharide, glycolipids and polysaccharides.
           Other subfamilies of nucleotidyl transferases include
           Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
           Mannose-1-phosphate guanyltransferase, and
           Glucose-1-phosphate thymidylyltransferase.
          Length = 220

 Score =  109 bits (275), Expect = 9e-25
 Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 20/231 (8%)

Query: 4   IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63
           +++AGG GTRLRPLT+   K ML +  KP++   +   +  G R    IS      ++++
Sbjct: 2   VIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNF-YISVNYLAEMIED 60

Query: 64  FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFHKA 123
           + G G K+GV  SY+ +  P G A +  L  E   D    L++  ++    +   +    
Sbjct: 61  YFGDGSKFGVNISYVREDKPLGTAGALSLLPEKPTD--PFLVMNGDILTNLNYEHLLDFH 118

Query: 124 RARRNSATVVGC--HVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVV 181
           +     ATV      VQ P  YGVVE +      SIEEKP +  S     GIY  + EV+
Sbjct: 119 KENNADATVCVREYEVQVP--YGVVETEGGR-ITSIEEKPTH--SFLVNAGIYVLEPEVL 173

Query: 182 N-IARNIRPSARGELEITDVNSYYLDKGLLAVEF-LREGSAWFDAGTPESL 230
           + I +N         ++ D+    + +G     F + E   W D G PE  
Sbjct: 174 DLIPKNEF------FDMPDLIEKLIKEGKKVGVFPIHE--YWLDIGRPEDY 216


>gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the
           synthesis of UDP-glucose.  Prokaryotic UDP-Glucose
           Pyrophosphorylase (UGPase) catalyzes a reversible
           production of UDP-Glucose  and pyrophosphate (PPi) from
           glucose-1-phosphate and UTP.  UDP-glucose plays pivotal
           roles in galactose utilization, in glycogen synthesis,
           and in the synthesis of the carbohydrate moieties of
           glycolipids , glycoproteins , and proteoglycans. UGPase
           is found in both prokaryotes and eukaryotes, although
           prokaryotic and eukaryotic forms of UGPase catalyze the
           same reaction, they share low sequence similarity.
          Length = 267

 Score =  108 bits (272), Expect = 2e-24
 Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 43/266 (16%)

Query: 1   MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPR---- 56
            K ++ A G GTR  P T  + K+MLPI +KP+I Y V   + AGI +I+I++       
Sbjct: 1   RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAI 60

Query: 57  -----DLPVLKEFLGSGEKW-----------GVQFSYIEQLVPAGLAQSYILGAEFIGDS 100
                    L+E L    K                 Y+ Q  P GL  + +    FIGD 
Sbjct: 61  EDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGDE 120

Query: 101 SSVLILGDNVFYG-----SDISDIFHKARARRNSATVVGCHVQNP---QRYGVVEVDSSN 152
              ++LGD++          + + + K       A+V+      P    +YG+V+ +  +
Sbjct: 121 PFAVLLGDDLIDSKEPCLKQLIEAYEKTG-----ASVIAVEEVPPEDVSKYGIVKGEKID 175

Query: 153 QAI----SIEEKPN--NPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITD-VNSYYL 205
             +     + EKP      S+ A+ G Y    ++ +I  N +P   GE+++TD +     
Sbjct: 176 GDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLE 235

Query: 206 DKGLLAVEFLREGSAWFDAGTPESLL 231
           ++ + A  F  EG   +D G     L
Sbjct: 236 EEPVYAYVF--EGK-RYDCGNKLGYL 258


>gnl|CDD|36536 KOG1322, KOG1322, KOG1322, GDP-mannose
           pyrophosphorylase/mannose-1-phosphate
           guanylyltransferase [Cell wall/membrane/envelope
           biogenesis].
          Length = 371

 Score =  104 bits (261), Expect = 3e-23
 Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 27/248 (10%)

Query: 1   MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
           +K I+L GG GTRLRPLT    K ++P  NKPMI + +  L+++GI +I++ +      +
Sbjct: 10  VKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESL 69

Query: 61  LKEFLGS-GEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSS--VLILGDNVFYGSDIS 117
            +    + G++ GV+     +  P G A    L  +F+         +L  +V       
Sbjct: 70  NRHLSKAYGKELGVEILASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYK 129

Query: 118 DIFHKARARRNSATVVGCHVQNPQRYGVVEVD-SSNQAISIEEKPNNPKSSFAVTGIYFY 176
           ++    RA     T+V   V  P +YGVV +D  + + I   EKP +  S+    GIY  
Sbjct: 130 EMVQFHRAHGAEITIVVTKVDEPSKYGVVVIDEDTGRVIRFVEKPKDLVSNKINAGIYIL 189

Query: 177 DQEVV--------NIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPE 228
           + EV+        +I + I P+   E +   + ++ L               W D G P+
Sbjct: 190 NPEVLDRILLRPTSIEKEIFPAMAEEHQ---LYAFDLP------------GFWMDIGQPK 234

Query: 229 SLLDTAVF 236
             L    F
Sbjct: 235 DFLTGFSF 242


>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the
           M1P-guanylyltransferase B-isoform like proteins.
           GDP-mannose pyrophosphorylase  (GTP:
           alpha-d-mannose-1-phosphate guanyltransferase) catalyzes
           the formation of GDP-d-mannose from GTP and
           alpha-d-mannose-1-Phosphate. It contains an N-terminal
           catalytic domain and a C-terminal Lefthanded-beta-Helix
           fold domain. GDP-d-mannose is the activated form of
           mannose for formation of cell wall lipoarabinomannan and
           various mannose-containing glycolipids and
           polysaccharides. The function of GDP-mannose
           pyrophosphorylase is essential for cell wall integrity,
           morphogenesis and viability. Repression of GDP-mannose
           pyrophosphorylase in yeast leads to phenotypes, such as
           cell lysis, defective cell wall, and failure of
           polarized growth and cell separation.
          Length = 233

 Score = 95.7 bits (239), Expect = 1e-20
 Identities = 71/232 (30%), Positives = 112/232 (48%), Gaps = 36/232 (15%)

Query: 1   MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIRE-ILIIS-TPRDL 58
           MK ++L GG GTRLRPLT  + K ++   NKPMI + +  L  AG++E IL ++  P D+
Sbjct: 1   MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDM 60

Query: 59  -PVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFY--GSD 115
            P LKE+    +K G++ ++  +  P G A    L  + +GD        D  F+   SD
Sbjct: 61  VPFLKEY---EKKLGIKITFSIETEPLGTAGPLALARDLLGD-------DDEPFFVLNSD 110

Query: 116 -ISDI-------FHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAI-SIEEKPNNPKS 166
            I D        FHK        T++   V++P +YGVV  D +   I    EKP     
Sbjct: 111 VICDFPLAELLDFHKKHGAE--GTILVTKVEDPSKYGVVVHDENTGRIERFVEKPKVFVG 168

Query: 167 SFAVTGIYFYDQEVVN--------IARNIRP--SARGELEITDVNSYYLDKG 208
           +    GIY  +  V++        I + I P  ++ G+L   ++  +++D G
Sbjct: 169 NKINAGIYILNPSVLDRIPLRPTSIEKEIFPKMASEGQLYAYELPGFWMDIG 220


>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of
           nucleotidyl transferases.  WcbM protein of Burkholderia
           mallei is involved in the biosynthesis, export or
           translocation of capsule. It is a subfamily of
           nucleotidyl transferases that transfer nucleotides onto
           phosphosugars.
          Length = 223

 Score = 85.7 bits (213), Expect = 1e-17
 Identities = 59/228 (25%), Positives = 98/228 (42%), Gaps = 11/228 (4%)

Query: 4   IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63
           ++LAGG GTRLR +   L K + P+  +P + Y +  L   GI  I ++S       ++E
Sbjct: 2   VILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRI-VLSVGYLAEQIEE 60

Query: 64  FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFHKA 123
           + G G + G++  Y+ +  P G   +       + +   +++ GD  ++  D+  +    
Sbjct: 61  YFGDGYRGGIRIYYVIEPEPLGTGGAIKNALPKLPEDQFLVLNGDT-YFDVDLLALLAAL 119

Query: 124 RARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVVNI 183
           RA    AT+    V +  RYG V VD   + I+  EK           G+Y   +E++  
Sbjct: 120 RASGADATMALRRVPDASRYGNVTVDGDGRVIAFVEKGPGAAPGLINGGVYLLRKEILAE 179

Query: 184 ARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWF-DAGTPESL 230
                 S    LE  DV    + +G L      E   +F D G PE  
Sbjct: 180 IPADAFS----LE-ADVLPALVKRGRLYG---FEVDGYFIDIGIPEDY 219


>gnl|CDD|30797 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate
           transport and metabolism].
          Length = 393

 Score = 84.5 bits (209), Expect = 3e-17
 Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 20/197 (10%)

Query: 3   GIVLAGGSGTRLRPLTDLLSKQMLPIYNK-PMIYYPVSTLMDAGIREILIISTPRDLPVL 61
            I+LAGG G+RL PLT   +K  +P   K  +I + +S  +++GIR I +++  +    L
Sbjct: 8   AIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSH-SL 66

Query: 62  KEFLGSGEKWGVQF--SYIEQLVP---AGLAQSYILGAEFI---------GDSSSVLILG 107
            + +G G  W +      +  L      G  + Y   A+ I          D   VLIL 
Sbjct: 67  NDHIGRGWPWDLDRKNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILS 126

Query: 108 DNVFYGSDISDIFHKARARRNSATVVGCHV--QNPQRYGVVEVDSSNQAISIEEKPNN-- 163
            +  Y  D SD+           TV    V  +   R+GV+ VD + + I   EKP +  
Sbjct: 127 GDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRIIEFVEKPADGP 186

Query: 164 PKSSFAVTGIYFYDQEV 180
           P +S A  GIY ++ ++
Sbjct: 187 PSNSLASMGIYIFNTDL 203


>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit
          of the eIF-2B is a subfamily of glycosyltransferase 2. 
          N-terminal domain of gamma subunit of the eukaryotic
          translation initiation factor 2B (eIF-2B): eIF-2B is a
          guanine nucleotide-exchange factor which mediates the
          exchange of GDP (bound to initiation factor eIF2) for
          GTP, generating active eIF2.GTP complex. EIF2B is a
          complex multimeric protein consisting of five subunits
          named alpha, beta, gamma, delta and epsilon. Subunit
          gamma shares sequence similarity with epsilon subunit,
          and with a family of bifunctional nucleotide-binding
          enzymes such as ADP-glucose pyrophosphorylase,
          suggesting that epsilon subunit may play roles in
          nucleotide binding activity. In yeast, eIF2B gamma
          enhances the activity of eIF2B-epsilon leading to the
          idea that these subunits form the catalytic subcomplex.
          Length = 214

 Score = 72.3 bits (178), Expect = 1e-13
 Identities = 24/57 (42%), Positives = 39/57 (68%)

Query: 1  MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRD 57
           + ++LAGG G+RL PLTD + K +LP+ NKPMI+YP+  L  AG  +++++    +
Sbjct: 1  FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEE 57


>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member
           of the nucleotidyl transferase family.  This is a
           subfamily of nucleotidyl transferases. Nucleotidyl
           transferases transfer nucleotides onto phosphosugars.
           The activated sugars are precursors for synthesis of
           lipopolysaccharide, glycolipids and polysaccharides.
           Other subfamilies of nucleotidyl transferases include
           Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
           Mannose-1-phosphate guanyltransferase, and
           Glucose-1-phosphate thymidylyltransferase.
          Length = 221

 Score = 71.4 bits (176), Expect = 2e-13
 Identities = 58/242 (23%), Positives = 93/242 (38%), Gaps = 31/242 (12%)

Query: 2   KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILI-ISTPRDLPV 60
           K ++LA G GTR+RPLTD   K ++P+  KP+I + +  L  AGIR I++      D   
Sbjct: 1   KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQ-- 58

Query: 61  LKEFLGSGEKWG--VQFSYIEQLVPA----GLAQSYILGAEFIGDSSSVLILGDNV-FYG 113
           ++  LG   ++G  +  S  E         G+ +        +GD   +++ GD +    
Sbjct: 59  IEAHLGD-SRFGLRITISD-EPDELLETGGGIKK----ALPLLGDEPFLVVNGDILWDGD 112

Query: 114 SDISDIFHKARARRNSATVVG--CHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVT 171
                + H  R       +        N    G   +D+  +   +        + F  T
Sbjct: 113 LAPLLLLHAWRMDALLLLLPLVRNPGHNG--VGDFSLDADGR---LRRGGGGAVAPFTFT 167

Query: 172 GIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLL 231
           GI     E+      I P   G+  +  +    +  G L          WFD GTPE LL
Sbjct: 168 GIQILSPELF---AGIPP---GKFSLNPLWDRAIAAGRLFGLVYD--GLWFDVGTPERLL 219

Query: 232 DT 233
             
Sbjct: 220 AA 221


>gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like
           is predicted to have glycosyltransferase activity.
           N-terminal domain of eEIF-2B epsilon and gamma, subunits
           of eukaryotic translation initiators, is a subfamily of
           glycosyltranferase 2 and is predicted to have
           glycosyltranferase activity. eIF-2B is a guanine
           nucleotide-exchange factor which mediates the exchange
           of GDP (bound to initiation factor eIF2) for GTP,
           generating active eIF2.GTP complex. EIF2B is a complex
           multimeric protein consisting of five subunits named
           alpha, beta, gamma, delta and epsilon. Subunit epsilon
           shares sequence similarity with gamma subunit, and with
           a family of bifunctional nucleotide-binding enzymes such
           as ADP-glucose pyrophosphorylase, suggesting that
           epsilon subunit may play roles in nucleotide binding
           activity. In yeast, eIF2B gamma enhances the activity of
           eIF2B-epsilon leading to the idea that these subunits
           form the catalytic subcomplex.
          Length = 216

 Score = 65.7 bits (161), Expect = 2e-11
 Identities = 42/188 (22%), Positives = 71/188 (37%), Gaps = 23/188 (12%)

Query: 1   MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
            + +VLA G G+R  PLT  + K +LP+ N P+I Y +  L  AG+ E+ ++       +
Sbjct: 1   FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAI 60

Query: 61  LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSS------VLILGDNVFYGS 114
           ++  L S  KW    S +   V           A  + D         +L+  D +    
Sbjct: 61  IEHLLKS--KWSSLSSKMIVDVITSDLCESAGDALRLRDIRGLIRSDFLLLSCD-LVSNI 117

Query: 115 DISDIFHKARA--RRNSATVVGCHVQNPQR---------YGVVEVDSSNQA---ISIEEK 160
            +S++  + R   +   AT+       P             V+ VDS  Q    +  EE 
Sbjct: 118 PLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEED 177

Query: 161 PNNPKSSF 168
            +      
Sbjct: 178 LDEDLELI 185


>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU.  The
           N-terminal domain of N-Acetylglucosamine-1-phosphate
           uridyltransferase (GlmU). GlmU is an essential bacterial
           enzyme with both an acetyltransferase and an
           uridyltransferase activity which have been mapped to the
           C-terminal and N-terminal domains, respectively. This
           family represents the N-terminal uridyltransferase. GlmU
           performs the last two steps in the synthesis of
           UDP-N-acetylglucosamine (UDP-GlcNAc), which is an
           essential precursor in both the peptidoglycan and the
           lipopolysaccharide metabolic pathways in Gram-positive
           and Gram-negative bacteria, respectively.
          Length = 229

 Score = 63.7 bits (156), Expect = 6e-11
 Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 30/221 (13%)

Query: 4   IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREI-LIISTPRDLPVLK 62
           ++LA G GTR++  +DL  K + P+  KPM+ + +      G   I +++    +  V K
Sbjct: 2   VILAAGKGTRMK--SDL-PKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQ-VKK 57

Query: 63  EFLGSGEKWGVQFSYIEQLVPAG-LAQSYILGAEFIGDSSSVLILGDNVFYG-------S 114
                  ++ +Q    EQL     + Q+     +F GD   VL+L     YG        
Sbjct: 58  ALANPNVEFVLQ---EEQLGTGHAVKQALPALKDFEGD---VLVL-----YGDVPLITPE 106

Query: 115 DISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISI-EEKPNNP---KSSFAV 170
            +  +    R      TV+   +++P  YG +  D + + + I EEK             
Sbjct: 107 TLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGNGKVLRIVEEKDATEEEKAIREVN 166

Query: 171 TGIYFYDQEVVNIA-RNIRPS-ARGELEITDVNSYYLDKGL 209
            GIY +D E +  A   +  + A+GE  +TD+ +  +  GL
Sbjct: 167 AGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGL 207


>gnl|CDD|36673 KOG1460, KOG1460, KOG1460, GDP-mannose pyrophosphorylase
           [Carbohydrate transport and metabolism, Cell
           wall/membrane/envelope biogenesis, Posttranslational
           modification, protein turnover, chaperones].
          Length = 407

 Score = 63.0 bits (153), Expect = 9e-11
 Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 10/196 (5%)

Query: 1   MKGIVLAGG--SGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMD-AGIREILIISTPRD 57
           +K ++L GG   GTR RPL+  + K + PI   PMI++ +S     +G+ EIL++    +
Sbjct: 3   VKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEE 62

Query: 58  LPVLKEFLGS-GEKWGVQFSYIEQLVPAGLAQSYILGAEFI--GDSSSVLILGDNVFYGS 114
             V  +F+ +  +++ V   Y+ +  P G A       + I  G  S+V +L  +V    
Sbjct: 63  -RVFTDFISAIQQEFKVPVRYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSF 121

Query: 115 DISDIFHKARARRNSATVVGCHVQNPQ--RYG-VVEVDSSNQAISIEEKPNNPKSSFAVT 171
            + D+    R      T++   V   Q   +G +VE  S+ + +   EKP+   S     
Sbjct: 122 PLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFVSDIINC 181

Query: 172 GIYFYDQEVVNIARNI 187
           G+Y +  E+ N    +
Sbjct: 182 GVYLFTPEIFNAIAEV 197


>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine
           cytidylyltransferases catalyze the synthesis of
           CDP-choline.  This family contains proteins similar to
           prokaryotic phosphocholine (P-cho)
           cytidylyltransferases. Phosphocholine (PC)
           cytidylyltransferases catalyze the transfer of a
           cytidine monophosphate from CTP to phosphocholine to
           form CDP-choline. PC is the most abundant phospholipid
           in eukaryotic membranes and it is also important in
           prokaryotic membranes. For pathogenic prokaryotes, the
           cell surface PC facilitates the interaction with host
           surface and induces attachment and invasion. In addition
           cell wall PC serves as scaffold for a group of
           choline-binding proteins that are secreted from the
           cells. Phosphocholine (PC) cytidylyltransferase is a key
           enzyme in the prokaryotic choline metabolism pathway. It
           has been hypothesized to consist of a choline transport
           system, a choline kinase, CTP:phosphocholine
           cytidylyltransferase, and a choline phosphotransferase
           that transfers P-Cho from CDP-Cho to either lipoteichoic
           acid or lipopolysaccharide.
          Length = 229

 Score = 62.2 bits (152), Expect = 2e-10
 Identities = 53/235 (22%), Positives = 91/235 (38%), Gaps = 19/235 (8%)

Query: 4   IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63
           I+LA G G+RLRPLT+   K +L I  KP++   + TL +AGI +I+I++  +    ++E
Sbjct: 2   IILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKK-EQIEE 60

Query: 64  FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLIL-GDNVFYGSDISDIFHK 122
            L       ++F Y           S  L  +F+ +    L+L GD VF       I  +
Sbjct: 61  LLKKYPN--IKFVYNPDYAETNNIYSLYLARDFLDE--DFLLLEGDVVFD----PSILER 112

Query: 123 ARA--RRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVT-GIYFYD-- 177
             +    N+  V     +    Y     D+      I  K  N +       GI  +   
Sbjct: 113 LLSSPADNAILVDKKTKEWEDEYVKDLDDAGVLLGII-SKAKNLEEIQGEYVGISKFSPE 171

Query: 178 --QEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESL 230
               +      +  + R  L   D     + +  + V+ +     W++    E L
Sbjct: 172 DADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDI-SDGFWYEIDDLEDL 225


>gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of
           M1P_guanylyl_A_ like proteins are likely to be a isoform
           of GDP-mannose pyrophosphorylase.  N-terminal domain of
           the M1P-guanylyltransferase A-isoform like proteins:
           The proteins of this family are likely to be a isoform
           of GDP-mannose pyrophosphorylase. Their sequences are
           highly conserved with mannose-1-phosphate
           guanyltransferase, but  generally about 40-60 bases
           longer.  GDP-mannose pyrophosphorylase (GTP:
           alpha-d-mannose-1-phosphate guanyltransferase) catalyzes
           the formation of GDP-d-mannose from GTP and
           alpha-d-mannose-1-Phosphate. It contains an N-terminal
           catalytic domain that resembles a dinucleotide-binding
           Rossmann fold and a C-terminal LbH fold domain.
           GDP-d-mannose is the activated form of mannose for
           formation of cell wall lipoarabinomannan and various
           mannose-containing glycolipids and polysaccharides. The
           function of GDP-mannose pyrophosphorylase is essential
           for cell wall integrity, morphogenesis and viability.
           Repression of GDP-mannose pyrophosphorylase in yeast
           leads to phenotypes including cell lysis, defective cell
           wall, and failure of polarized growth and cell
           separation.
          Length = 257

 Score = 60.3 bits (147), Expect = 5e-10
 Identities = 52/224 (23%), Positives = 101/224 (45%), Gaps = 18/224 (8%)

Query: 3   GIVLAGG--SGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMD-AGIREILIISTPRDLP 59
            ++L GG   GTR RPL+  + K + P+  KPMI++ +        ++E+L+I    +  
Sbjct: 1   AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPES- 59

Query: 60  VLKEFLGSG-EKWGVQFSYIEQLVPAGLA------QSYILGAEFIGDSSSVLILGDNVFY 112
           V  +F+    +++ V   Y+++  P G A      +  IL     G+ S+  +L  +V  
Sbjct: 60  VFSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILA----GNPSAFFVLNADVCC 115

Query: 113 GSDISDIFHKARARRNSATVVGCHVQNPQ--RYG-VVEVDSSNQAISIEEKPNNPKSSFA 169
              + ++    +    S T++G      Q   YG +VE  S+ + +   EKP    S   
Sbjct: 116 DFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFVSDLI 175

Query: 170 VTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVE 213
             G+Y +  E+ +  +    S + E ++ D N+      ++ +E
Sbjct: 176 NCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLE 219


>gnl|CDD|36675 KOG1462, KOG1462, KOG1462, Translation initiation factor 2B,
          gamma subunit (eIF-2Bgamma/GCD1) [Translation,
          ribosomal structure and biogenesis].
          Length = 433

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 31/79 (39%), Positives = 47/79 (59%)

Query: 1  MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
           + +VLAGG GTR+  +T  L K +LPI NKPMI YP+++L  AG  EI+++    +   
Sbjct: 10 FQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLD 69

Query: 61 LKEFLGSGEKWGVQFSYIE 79
          ++  LGS      +  Y+E
Sbjct: 70 IESALGSNIDLKKRPDYVE 88


>gnl|CDD|31400 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase
           (contains nucleotidyltransferase and I-patch
           acetyltransferase domains) [Cell envelope biogenesis,
           outer membrane].
          Length = 460

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 51/223 (22%), Positives = 97/223 (43%), Gaps = 26/223 (11%)

Query: 1   MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREI-LIISTPRDLP 59
           +  ++LA G GTR++  +DL  K + P+  KPM+ + +      G  +I +++    +  
Sbjct: 3   LSAVILAAGKGTRMK--SDL-PKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQ- 58

Query: 60  VLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYG------ 113
           V +      E+  V+F  + Q    G   + +     + D     +L   V YG      
Sbjct: 59  VREAL---AERDDVEF--VLQEEQLGTGHAVLQALPALADDYDGDVL---VLYGDVPLIT 110

Query: 114 -SDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISI-EEKPNNP---KSSF 168
              + ++     A   +ATV+   + +P  YG +  D + +  +I EEK  +    +   
Sbjct: 111 AETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKE 170

Query: 169 AVTGIYFYDQEVVNIA-RNIRPS-ARGELEITDVNSYYLDKGL 209
             TGIY +D   +  A   +  + A+GE  +TDV +   ++G 
Sbjct: 171 INTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGE 213


>gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved
           in the biosynthesis of glycogen or starch.  ADP-glucose
           pyrophosphorylase (glucose-1-phosphate
           adenylyltransferase) catalyzes a very important step in
           the biosynthesis of alpha 1,4-glucans (glycogen or
           starch) in bacteria and plants: synthesis of the
           activated glucosyl donor, ADP-glucose, from
           glucose-1-phosphate and ATP.  ADP-glucose
           pyrophosphorylase is a tetrameric allosterically
           regulated enzyme. While a homotetramer in bacteria, in
           plant chloroplasts and amyloplasts, it is a
           heterotetramer of two different, yet evolutionary
           related, subunits.  There are a number of conserved
           regions in the sequence of bacterial and plant
           ADP-glucose pyrophosphorylase subunits. It is a
           subfamily of a very diverse glycosy transferase family
           2.
          Length = 200

 Score = 57.6 bits (140), Expect = 4e-09
 Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 19/147 (12%)

Query: 3   GIVLAGGSGTRLRPLTDLLSKQMLPI---YNKPMIYYPVSTLMDAGIREILIISTPRDLP 59
            I+LAGG GTRL PLT   +K  +P    Y   +I +P+S ++++GIR + ++ T     
Sbjct: 1   AIILAGGEGTRLSPLTKKRAKPAVPFGGRYR--LIDFPLSNMVNSGIRNVGVL-TQYKSR 57

Query: 60  VLKEFLGSGEKW-------GVQFSYIEQLVP----AGLAQSYILGAEFIGDSSS--VLIL 106
            L + LGSG++W       G+     +Q        G A +     ++I  S    VLIL
Sbjct: 58  SLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLIL 117

Query: 107 GDNVFYGSDISDIFHKARARRNSATVV 133
             +  Y  D  ++           TVV
Sbjct: 118 SGDHIYNMDYREMLDFHIESGADITVV 144


>gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase
           catalyzes the production of CDP-D-Glucose.
           Alpha-D-Glucose-1-phosphate Cytidylyltransferase
           catalyzes the production of CDP-D-Glucose from
           alpha-D-Glucose-1-phosphate and MgCTP as substrate.
           CDP-D-Glucose is the precursor  for synthesizing four of
           the five naturally occurring 3,6-dideoxy sugars-abequose
           (3,6-dideoxy-D-Xylo-hexose), ascarylose
           (3,6-dideoxy-L-arabino-hexose), paratose
           (3,6-dideoxy-D-ribohexose), and tyvelose
           (3,6-dideoxy-D-arabino-hexose. Deoxysugars are
           ubiquitous in nature where they function in a variety of
           biological processes, including cell adhesion, immune
           response, determination of ABO blood groups,
           fertilization, antibiotic function, and microbial
           pathogenicity.
          Length = 253

 Score = 56.4 bits (137), Expect = 8e-09
 Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 56/195 (28%)

Query: 4   IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDA----GIRE-ILIISTPRDL 58
           ++LAGG GTRL   T+L  K M+ I  +P++++    +M      G  + IL +      
Sbjct: 2   VILAGGLGTRLSEETELKPKPMVEIGGRPILWH----IMKIYSHYGHNDFILCLGYKGH- 56

Query: 59  PVLKEF--------------LGSGEKWGVQF--SYIEQ----LVPAGLAQSYILG----- 93
            V+KE+              LG+     ++   S IE     LV  GL  +   G     
Sbjct: 57  -VIKEYFLNYFLHNSDVTIDLGTNR---IELHNSDIEDWKVTLVDTGLN-TMTGGRLKRV 111

Query: 94  AEFIGDSSSVLILGDNVFYGSDISDI-------FHKARARRNSATVVGCHVQNPQRYGVV 146
             ++GD  + ++      YG  +SD+       FH++  +   ATV    V  P R+G +
Sbjct: 112 RRYLGDDETFMLT-----YGDGVSDVNINALIEFHRSHGK--LATVTA--VHPPGRFGEL 162

Query: 147 EVDSSNQAISIEEKP 161
           ++D   Q  S  EKP
Sbjct: 163 DLDDDGQVTSFTEKP 177


>gnl|CDD|34365 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in
           choline phosphorylation for cell surface LPS epitopes
           [Cell envelope biogenesis, outer membrane].
          Length = 231

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 20/164 (12%)

Query: 1   MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
           M  I+LA G G+R  PLT    K +L +  +P+I   +  L +AGI +I I+        
Sbjct: 1   MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVG-----Y 55

Query: 61  LKE-FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDI 119
           LKE F    +K+ V   Y  +        S  L  +F+ +  + +I  DN        +I
Sbjct: 56  LKEQFEYLKDKYDVTLVYNPKYREYNNIYSLYLARDFLNN--TYIIDSDNYLT----KNI 109

Query: 120 FHKARARRNSATVV--GCHVQNPQRYGV------VEVDSSNQAI 155
           F    +      V   G   +    Y        V++   N  I
Sbjct: 110 FLTKESHSKYFAVYRSGKTNEWLLIYNSDGKITRVDIGGLNGYI 153


>gnl|CDD|31406 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell
           envelope biogenesis, outer membrane].
          Length = 239

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 36/242 (14%)

Query: 1   MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
           MK ++LA G G+RL P    + K ++ +  + +IY  +  L  AGI E ++++      +
Sbjct: 4   MKAVILAAGFGSRLGPD---IPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADL 60

Query: 61  LKEFLGSGEKWGVQFSYIEQLVP------AGLAQSYILGAEFIGDSSSVLILGDNVFYGS 114
           ++EFL        ++ +  ++V            S +L  +++      +++  +  Y  
Sbjct: 61  VEEFLK-------KYPFNAKIVINSDYEKTNTGYSLLLAKDYMDG--RFILVMSDHVYEP 111

Query: 115 DISDIFHKARARRNSATVVGCHVQNPQRYGVVEV----DSSNQAISIEEKPNNPKSSFAV 170
            I +   +A              + P+  GV E     D   + + I +           
Sbjct: 112 SILERLLEAPGEGLIV------DRRPRYVGVEEATKVKDEGGRIVEIGKDLTEY--DGED 163

Query: 171 TGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLRE--GSAWFDAGTPE 228
            GI+     +             E    D      + GL   E      G  W +  TPE
Sbjct: 164 IGIFILSDSIFEDTYE----LLVERSEYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPE 219

Query: 229 SL 230
            L
Sbjct: 220 DL 221


>gnl|CDD|36674 KOG1461, KOG1461, KOG1461, Translation initiation factor 2B,
           epsilon subunit (eIF-2Bepsilon/GCD6) [Translation,
           ribosomal structure and biogenesis].
          Length = 673

 Score = 53.8 bits (129), Expect = 6e-08
 Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 17/179 (9%)

Query: 4   IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63
           I+LA    TR RPLT    + +LP+ N PMI Y +  L  AG+ E+ +  +     +++ 
Sbjct: 28  ILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEY 87

Query: 64  FLGSGEKWGVQFSYIEQLVPAGLAQS------YILGAEFIGDSSSVLILGDNVFYGSDIS 117
              S  +W +  S+I   + +G ++S       I   + I  +   +++  +      + 
Sbjct: 88  IEKS--EWYLPMSFIVVTICSGESRSVGDAMRDIDEKQLI--TGDFILVSGDTVSNMPLR 143

Query: 118 DI--FHKARARRNSATVVG-CHVQNPQRYG----VVEVDSSNQAISIEEKPNNPKSSFA 169
           ++   H+ R + +   ++     ++  R      V+ VDS    +   +K    K    
Sbjct: 144 NVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVVIAVDSRTSRLLHYQKCVREKHDIQ 202


>gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon subunit
           of the eIF-2B is a subfamily of glycosyltransferase 2.
           N-terminal domain of epsilon subunit of the eukaryotic
           translation initiation factor 2B (eIF-2B): eIF-2B is a
           guanine nucleotide-exchange factor which mediates the
           exchange of GDP (bound to initiation factor eIF2) for
           GTP, generating active eIF2.GTP complex. EIF2B is a
           complex multimeric protein consisting of five subunits
           named alpha, beta, gamma, delta and epsilon. Subunit
           epsilon shares sequence similarity with gamma subunit,
           and with a family of bifunctional nucleotide-binding
           enzymes such as ADP-glucose pyrophosphorylase,
           suggesting that epsilon subunit may play roles in
           nucleotide binding activity. In yeast, eIF2B gamma
           enhances the activity of eIF2B-epsilon leading to the
           idea that these subunits form the catalytic subcomplex.
          Length = 217

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 36/192 (18%)

Query: 3   GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILII-STPRDLPVL 61
            +VLA     R RPLT    + +LP+ N P+I Y +  L   G+ E+ +   +  D   +
Sbjct: 3   AVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQ--I 60

Query: 62  KEFLGSGEKWGVQFSY-IEQLVPAGLAQSYILGAEFIGD------------SSSVLILGD 108
           KE++   +    + S  I  ++ +   +S       +GD               +L+ GD
Sbjct: 61  KEYIEKSKWSKPKSSLMIVIIIMSEDCRS-------LGDALRDLDAKGLIRGDFILVSGD 113

Query: 109 NVFYGSDISDIFHKARARR-----NSATVV--GCHVQNPQRYG----VVEVD-SSNQAIS 156
            V    D+ +I  + + RR        T+V       +  R      V+ VD  +++ + 
Sbjct: 114 VV-SNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTSRLLH 172

Query: 157 IEEKPNNPKSSF 168
            EE P +   S 
Sbjct: 173 YEELPGSKYRSI 184


>gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in
          mevalonate-independent isoprenoid production.
          4-diphosphocytidyl-2-methyl-D-erythritol synthase
          (CDP-ME), also called  2C-methyl-d-erythritol
          4-phosphate cytidylyltransferase catalyzes the third
          step in the alternative (non-mevalonate) pathway of
          Isopentenyl diphosphate (IPP) biosynthesis: the
          formation of 4-diphosphocytidyl-2C-methyl-D-erythritol
          from CTP and 2C-methyl-D-erythritol 4-phosphate. This
          mevalonate independent pathway that utilizes pyruvate
          and glyceraldehydes 3-phosphate as starting materials
          for production of IPP occurs in a variety of bacteria,
          archaea and plant cells, but is absent in mammals.
          Thus, CDP-ME synthetase is  an attractive targets for
          the structure-based design of selective antibacterial,
          herbicidal and antimalarial drugs.
          Length = 218

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 4  IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVLK 62
          I+LA GSG+R+        KQ L +  KP++ + +   +    I EI+++  P D+ + K
Sbjct: 4  IILAAGSGSRMGADI---PKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAK 60

Query: 63 E 63
          E
Sbjct: 61 E 61


>gnl|CDD|133026 cd04183, GT2_BcE_like, GT2_BcbE_like is likely involved in the
           biosynthesis of the polysaccharide capsule.
           GT2_BcbE_like:  The bcbE gene is one of the genes in the
           capsule biosynthetic locus of Pasteurella multocida. Its
           deducted product is likely involved in the biosynthesis
           of the polysaccharide capsule, which is found on surface
           of a wide range of bacteria. It is a subfamily of
           Glycosyltransferase Family GT2, which includes diverse
           families of glycosyltransferases with a common GT-A type
           structural fold, which has two tightly associated
           beta/alpha/beta domains that tend to form a continuous
           central sheet of at least eight beta-strands. These are
           enzymes that catalyze the transfer of sugar moieties
           from activated donor molecules to specific acceptor
           molecules, forming glycosidic bonds.
          Length = 231

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 7/175 (4%)

Query: 4   IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63
           I+   G G+R +       K ++ +  KPMI + + +L        + I   RD    K 
Sbjct: 2   IIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFIC--RDEHNTKF 59

Query: 64  FLGSGEKWGVQFSYIEQL--VPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFH 121
            L    K     + + +L     G A + +L A+ I +   +LI   +    SD+     
Sbjct: 60  HLDESLKLLAPNATVVELDGETLGAACTVLLAADLIDNDDPLLIFNCDQIVESDLLAFLA 119

Query: 122 KARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFY 176
             R R     V+     +P R+  V++D + + I   EK   P S  A  G+Y++
Sbjct: 120 AFRERDLDGGVLTFFSSHP-RWSYVKLDENGRVIETAEK--EPISDLATAGLYYF 171


>gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the
           glycosyltransferase family 2 (GT-2) with unknown
           function.  GT-2 includes diverse families of
           glycosyltransferases with a common GT-A type structural
           fold, which has two tightly associated beta/alpha/beta
           domains that tend to form a continuous central sheet of
           at least eight beta-strands. These are enzymes that
           catalyze the transfer of sugar moieties from activated
           donor molecules to specific acceptor molecules, forming
           glycosidic bonds. Glycosyltransferases have been
           classified into more than 90 distinct sequence based
           families.
          Length = 186

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 12/136 (8%)

Query: 3   GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62
            I+LA G  +R+       +K +LP+  KP++ + +   + AG+  ++++       V  
Sbjct: 3   AIILAAGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRA 57

Query: 63  EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFI-GDSSSVLI-LGDNVFYGSDISDIF 120
              G      +   + E     G++ S   G E +  D+ +VLI L D     ++     
Sbjct: 58  ALAGLPVVVVINPDWEE-----GMSSSLAAGLEALPADADAVLILLADQPLVTAETLRAL 112

Query: 121 HKARARRNSATVVGCH 136
             A     +  V   +
Sbjct: 113 IDAFREDGAGIVAPVY 128


>gnl|CDD|31404 COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase
          [Lipid metabolism].
          Length = 230

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 3  GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVL 61
           ++LA G G+R+      + KQ L +  +P++ + +   +++  I EI+++ +P D P  
Sbjct: 7  AVILAAGFGSRMGNP---VPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYF 63

Query: 62 KEFL 65
          ++  
Sbjct: 64 EKLP 67


>gnl|CDD|32251 COG2068, COG2068, Uncharacterized MobA-related protein [General
           function prediction only].
          Length = 199

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 13/139 (9%)

Query: 3   GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62
            +VLA G  +R+        K + P+  KP++     T + AG+  +++++  R    ++
Sbjct: 8   AVVLAAGRSSRMGQ-----PKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVE 62

Query: 63  EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSS--SVLILGDNVFYGSDISDIF 120
             L      GV           GL+ S   G           VL+LGD          + 
Sbjct: 63  ALLAQL---GVTVVVNPD-YAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPA--TVR 116

Query: 121 HKARARRNSATVVGCHVQN 139
               A R     V      
Sbjct: 117 RLIAAFRARGAAVRPVYGG 135


>gnl|CDD|32447 COG2266, COG2266, GTP:adenosylcobinamide-phosphate
          guanylyltransferase [Coenzyme metabolism].
          Length = 177

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 15/87 (17%)

Query: 1  MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
          M  I++AGG GTR+        K +L +  KP+I   +  L    + EI++  +P   P 
Sbjct: 1  MMAIIMAGGRGTRM----GRPEKPLLEVCGKPLIDRVLEALRKI-VDEIIVAISP-HTPK 54

Query: 61 LKEFLGSGEKWGVQF------SYIEQL 81
           KE+L   E  GV+        Y+E L
Sbjct: 55 TKEYL---ESVGVKVIETPGEGYVEDL 78


>gnl|CDD|133003 cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase
          catalyzes the formation of GDP-Mannose.
          GDP-mannose-1-phosphate guanylyltransferase, also
          called GDP-mannose pyrophosphorylase (GDP-MP),
          catalyzes the formation of GDP-Mannose from
          mannose-1-phosphate and GTP. Mannose is a key
          monosaccharide for glycosylation of proteins and
          lipids. GDP-Mannose is the activated donor for
          mannosylation of various biomolecules. This enzyme is
          known to be bifunctional, as both mannose-6-phosphate
          isomerase and mannose-1-phosphate guanylyltransferase.
          This CD covers the N-terminal GDP-mannose-1-phosphate
          guanylyltransferase domain, whereas the isomerase
          function is located at the C-terminal half. GDP-MP is a
          member of the nucleotidyltransferase family of enzymes.
          Length = 274

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)

Query: 1  MKGIVLAGGSGTRLRPL-TDLLSKQMLPIY-NKPMI 34
          +  ++LAGGSGTRL PL  +   KQ L ++ +K ++
Sbjct: 1  IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLL 36


>gnl|CDD|31089 COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis
          protein A [Coenzyme metabolism].
          Length = 192

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 8/64 (12%)

Query: 1  MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
          M G++LAGG   R+R       K +LP+  +P+I + +  L      ++++IS  R+   
Sbjct: 5  MTGVILAGGKSRRMRD------KALLPLNGRPLIEHVIDRL--RPQVDVVVISANRNQGR 56

Query: 61 LKEF 64
            EF
Sbjct: 57 YAEF 60


>gnl|CDD|31178 COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell
          envelope biogenesis, outer membrane].
          Length = 333

 Score = 34.4 bits (79), Expect = 0.033
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1  MKGIVLAGGSGTRLRPL-TDLLSKQMLPIY-NKPMIYYPVSTLMD-AGIREILIIS 53
          M  ++LAGGSG+RL PL      KQ L ++ +  ++   V  L     I E L+++
Sbjct: 2  MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVT 57


>gnl|CDD|133000 cd02503, MobA, MobA catalyzes the formation of molybdopterin
          guanine dinucleotide.  The prokaryotic enzyme
          molybdopterin-guanine dinucleotide biosynthesis protein
          A (MobA). All mononuclear molybdoenzymes bind
          molybdenum in complex with an organic cofactor termed
          molybdopterin (MPT). In many bacteria, including
          Escherichia coli, molybdopterin can be further modified
          by attachment of a GMP group to the terminal phosphate
          of molybdopterin to form molybdopterin guanine
          dinucleotide (MGD). This GMP attachment step is
          catalyzed by MobA, by linking a guanosine 5'-phosphate
          to MPT forming molybdopterin guanine dinucleotide. This
          reaction requires GTP, MgCl2, and the MPT form of the
          cofactor. It is a reaction unique to prokaryotes, and
          therefore may represent a potential drug target.
          Length = 181

 Score = 34.5 bits (80), Expect = 0.041
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 1  MKGIVLAGGSGTRL-RPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLP 59
          + G++LAGG   R+         K +L +  KP++ + +  L    + + ++IS  RD  
Sbjct: 1  ITGVILAGGKSRRMGGD------KALLELGGKPLLEHVLERL--KPLVDEVVISANRDQE 52

Query: 60 VLKEF 64
               
Sbjct: 53 RYALL 57


>gnl|CDD|31280 COG1083, NeuA, CMP-N-acetylneuraminic acid synthetase [Cell
           envelope biogenesis, outer membrane].
          Length = 228

 Score = 31.8 bits (72), Expect = 0.22
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 21/110 (19%)

Query: 4   IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63
           I+ A G    ++      +K +     KP+I Y +   +++ + + ++IS+  +     E
Sbjct: 7   IIPARGGSKGIK------NKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSE-----E 55

Query: 64  FLGSGEKWGVQFSYIEQLVPAGLAQSY-------ILGAEFIGDSSSVLIL 106
            L   +K+G +        P  LA          +   E        LIL
Sbjct: 56  ILEEAKKYGAKVFLKR---PKELASDRASTIDAALHALESFNIDEDTLIL 102


>gnl|CDD|32046 COG1861, SpsF, Spore coat polysaccharide biosynthesis protein F,
           CMP-KDO synthetase homolog [Cell envelope biogenesis,
           outer membrane].
          Length = 241

 Score = 31.0 bits (70), Expect = 0.34
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 10/116 (8%)

Query: 3   GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62
            I+ A    TRL        K +LP+  +PMI Y +  +  +   + ++++T  D     
Sbjct: 6   VIIQARMGSTRLP------GKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATS-DKEEDD 58

Query: 63  EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISD 118
                    G    Y+ +     + Q +I+  +       V + GDN F   ++ D
Sbjct: 59  ALEEVCRSHGF---YVFRGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVD 111


>gnl|CDD|145475 pfam02348, CTP_transf_3, Cytidylyltransferase.  This family
          consists of two main Cytidylyltransferase activities:
          1) 3-deoxy-manno-octulosonate cytidylyltransferase,,
          EC:2.7.7.38 catalysing the reaction:- CTP +
          3-deoxy-D-manno-octulosonate <=> diphosphate +
          CMP-3-deoxy-D-manno-octulosonate, 2) acylneuraminate
          cytidylyltransferase EC:2.7.7.43,, catalysing the
          reaction:- CTP + N-acylneuraminate <=> diphosphate +
          CMP-N-acylneuraminate. NeuAc cytydilyltransferase of
          Mannheimia haemolytica has been characterized
          describing kinetics and regulation by substrate charge,
          energetic charge and amino-sugar demand.
          Length = 197

 Score = 30.0 bits (68), Expect = 0.90
 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 3  GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIIST 54
           I+ A     RL        K +L +  KP+I   +   + + + + ++++T
Sbjct: 2  AIIPARSGSKRLP------GKNLLKLGGKPLIARVIEAALQSKLFDKVVVAT 47


>gnl|CDD|107344 cd06349, PBP1_ABC_ligand_binding_like_14, Type I periplasmic
           ligand-binding domain of uncharacterized ABC (Atpase
           Binding Cassette)-type active transport systems.  This
           subgroup includes the type I periplasmic ligand-binding
           domain of uncharacterized ABC (Atpase Binding
           Cassette)-type active transport systems that are
           predicted to be involved in the uptake of amino acids,
           peptides, or inorganic ions. This subgroup has high
           sequence similarity to members of the family of
           hydrophobic amino acid transporters (HAAT), such as
           leucine/isoleucine/valine binding protein (LIVBP);
           however its ligand specificity has not been determined
           experimentally.
          Length = 340

 Score = 28.9 bits (65), Expect = 1.7
 Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 20/137 (14%)

Query: 98  GDSSSVLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISI 157
                V IL  N  +G   +DIF KA  +     V             V  +   +    
Sbjct: 133 LGFKKVAILSVNTDWGRTSADIFVKAAEKLGGQVVA--------HEEYVPGEKDFRPTIT 184

Query: 158 EEKPNNPKSSFAVTGIYFYDQEVVNIARNIRPSARG-ELEITDVNSYY----LDKGLLAV 212
             +  NP +   ++    Y  +   IAR  R  A G ++ +   +S Y    ++ G  AV
Sbjct: 185 RLRDANPDAIILIS----YYNDGAPIARQAR--AVGLDIPVVASSSVYSPKFIELGGDAV 238

Query: 213 EFLREGSAWF-DAGTPE 228
           E +   +A+F     PE
Sbjct: 239 EGVYTPTAFFPGDPRPE 255


>gnl|CDD|177015 CHL00076, chlB, photochlorophyllide reductase subunit B.
          Length = 513

 Score = 28.8 bits (65), Expect = 1.8
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 204 YLDKGLLAVEFL-REGSAWFDAGTPESLLDTAVFVRNIENRLGLYVACPEEIAYRHD-FI 261
           Y + GL+  ++L +E    + + TP  ++DTA  +R I+  L    +   E    ++ +I
Sbjct: 222 YREVGLMTAKYLEKEFGMPYISTTPMGIVDTAECIRQIQKILNKLASDILEKKVDYEKYI 281

Query: 262 NESQFF 267
           ++   F
Sbjct: 282 DQQTRF 287


>gnl|CDD|144061 pfam00328, Acid_phosphat_A, Histidine acid phosphatase. 
          Length = 330

 Score = 28.6 bits (64), Expect = 2.0
 Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 10/64 (15%)

Query: 36 YPVSTL---MDAGIREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYIL 92
           P   L   ++A   ++L              L     WG       QL P G  Q++ L
Sbjct: 15 TPTKKLPKDLEAWPFKLLSAKHKFGKYDFLNKLQWPLGWG-------QLTPEGRQQAFEL 67

Query: 93 GAEF 96
          G   
Sbjct: 68 GRYL 71


>gnl|CDD|32607 COG2710, NifD, Nitrogenase molybdenum-iron protein, alpha and beta
           chains [Energy production and conversion].
          Length = 456

 Score = 27.3 bits (60), Expect = 5.4
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 187 IRPSARGELEITDVNSYYLDKGLLAVEFLRE--GSAWFDAGTPESLLDTAVFVRNIENRL 244
           IR +   +L +          G     +L E  G  W +  +P  + +T  F+RN+   L
Sbjct: 227 IRRAPNAKLNL----VLCSRSGRYLARYLEERFGIPWIEVPSPLGIENTDRFLRNLAKLL 282

Query: 245 GLYVACPEEI 254
           G     PEE+
Sbjct: 283 GKIEEIPEEV 292


>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal
           enzymes that cleave bonds in peptides at acidic pH.
           Pepsin-like aspartic proteases are found in mammals,
           plants, fungi and bacteria. These well known and
           extensively characterized enzymes include pepsins,
           chymosin, renin, cathepsins, and fungal aspartic
           proteases. Several have long been known to be medically
           (renin, cathepsin D and E, pepsin) or commercially
           (chymosin) important. Structurally, aspartic proteases
           are bilobal enzymes, each lobe contributing a catalytic
           Aspartate residue, with an extended active site cleft
           localized between the two lobes of the molecule. The N-
           and C-terminal domains, although structurally related by
           a 2-fold axis, have only limited sequence homology
           except the vicinity of the active site. This suggests
           that the enzymes evolved by an ancient duplication
           event.  Most members of the pepsin family specifically
           cleave bonds in peptides that are at least six residues
           in length, with hydrophobic residues in both the P1 and
           P1' positions. The active site is located at the groove
           formed by the two lobes, with an extended loop
           projecting over the cleft to form an 11-residue flap,
           which encloses substrates and inhibitors in the active
           site. Specificity is determined by nearest-neighbor
           hydrophobic residues surrounding the catalytic
           aspartates, and by three residues in the flap.The
           enzymes are mostly secreted from cells as inactive
           proenzymes that activate autocatalytically at acidic pH.
           This family of aspartate proteases is classified by
           MEROPS as the peptidase family A1 (pepsin A, clan AA).
          Length = 283

 Score = 27.0 bits (60), Expect = 5.9
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 74  QFSYIEQLVPAGLAQ----SYILGAEFIGDSSSVLILG--DNVFYGSDIS 117
             S+ +QL   GL      S+ LG +  G +   L  G  D   Y  D++
Sbjct: 121 VPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLT 170


>gnl|CDD|143916 pfam00148, Oxidored_nitro, Nitrogenase component 1 type
           Oxidoreductase. 
          Length = 398

 Score = 26.4 bits (59), Expect = 8.5
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 208 GLLAVEFLRE--GSAWFDAGTPESLLDTAVFVRNIENRLGLYVACPEEIA 255
           G  A ++L E  G  + + G+P  +  T  F+R +   LG  VA PE IA
Sbjct: 205 GRYAAKYLEERFGVPYIELGSPIGIEATDRFLRALAELLGKEVA-PEVIA 253


>gnl|CDD|107359 cd06364, PBP1_CaSR, Ligand-binding domain of the CaSR
           calcium-sensing receptor, which is a member of the
           family C receptors within the G-protein coupled receptor
           superfamily.  Ligand-binding domain of the CaSR
           calcium-sensing receptor, which is a member of the
           family C receptors within the G-protein coupled receptor
           superfamily. CaSR provides feedback control of
           extracellular calcium homeostasis by responding
           sensitively to acute fluctuations in extracellular
           ionized Ca2+ concentration. This ligand-binding domain
           has homology to the bacterial leucine-isoleucine-valine
           binding protein (LIVBP) and a leucine binding protein
           (LBP). CaSR is widely expressed in mammalian tissues and
           is active in tissues that are not directly involved in
           extracellular calcium homeostasis. Moreover, CaSR
           responds to aromatic, aliphatic, and polar amino acids,
           but not to positively charged or branched chain amino
           acids, which suggests that changes in plasma amino acid
           levels are likely to modulate whole body calcium
           metabolism. Additionally, the family C GPCRs includes at
           least two receptors with broad-spectrum amino
           acid-sensing properties: GPRC6A which recognizes basic
           and various aliphatic amino acids, its gold-fish homolog
           the 5.24 chemoreceptor, and a specific taste receptor
           (T1R) which responds to aliphatic, polar, charged, and
           branched amino acids, but not to aromatic amino acids.
          Length = 510

 Score = 26.5 bits (58), Expect = 8.6
 Identities = 14/58 (24%), Positives = 22/58 (37%)

Query: 157 IEEKPNNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEF 214
           +E+ P N        G      +  N +   RP   G+  I  V + YLD   L + +
Sbjct: 341 LEDSPKNALPVDTFLGHEESGDDSENGSTAFRPLCTGDENIASVETPYLDYTHLRISY 398


>gnl|CDD|133036 cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes
          the synthesis of UDPGlcNAc.  UDP-N-acetylglucosamine
          (UDPGlcNAc) pyrophosphorylase (UAP) (also named
          GlcNAc1P uridyltransferase), catalyzes the reversible
          conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc.
          UDP-N-acetylglucosamine (UDPGlcNAc), the activated form
          of GlcNAc, is a key precursor of N- and O-linked
          glycosylations. It is essential for the synthesis of
          chitin (a major component of the fungal cell wall) and
          of the glycosylphosphatidylinositol (GPI) linker which
          anchors a variety of cell surface proteins to the
          plasma membrane. In bacteria, UDPGlcNAc represents an
          essential precursor for both peptidoglycan and
          lipopolysaccharide biosynthesis. Human UAP has two
          isoforms, resulting from alternative splicing of a
          single gene and differing by the presence or absence of
          17 amino acids. UDPGlcNAc  pyrophosphorylase shares
          significant sequence and structure conservation with
          UDPglucose pyrophosphorylase.
          Length = 323

 Score = 26.4 bits (59), Expect = 8.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)

Query: 4  IVLAGGSGTRL 14
          ++LAGG GTRL
Sbjct: 19 LLLAGGQGTRL 29


>gnl|CDD|38785 KOG3578, KOG3578, KOG3578, Uncharacterized conserved protein
           [Function unknown].
          Length = 1058

 Score = 26.6 bits (58), Expect = 8.8
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 7/128 (5%)

Query: 165 KSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDA 224
              F V   +  D+E   I   +    R  LEI   N+  +   + A+ F +      D 
Sbjct: 773 VQKFYVFSTFVPDEE---IKSRLLKEHRFSLEIKAPNNAKVYPRMRAIAFRKYIRVLGDP 829

Query: 225 GTPESLLD-TAVFVRNIENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLR 283
              +S +D     +  + N +G YV   +  +   +F     F     +   S   L++ 
Sbjct: 830 DLGQSYIDEFRAIIDQLGNAVG-YVRLLQAGSKNANFFT--HFVTNRFYCYFSQGYLFIE 886

Query: 284 QVVEKKKR 291
           +  + KKR
Sbjct: 887 EATDSKKR 894


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0683    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,650,819
Number of extensions: 197249
Number of successful extensions: 528
Number of sequences better than 10.0: 1
Number of HSP's gapped: 482
Number of HSP's successfully gapped: 61
Length of query: 292
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 199
Effective length of database: 4,254,100
Effective search space: 846565900
Effective search space used: 846565900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)