RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780922|ref|YP_003065335.1| glucose-1-phosphate
thymidylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(292 letters)
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate
thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia
coli} SCOP: c.68.1.6
Length = 296
Score = 402 bits (1035), Expect = e-113
Identities = 146/291 (50%), Positives = 198/291 (68%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
MKGI+LAGGSGTRL P+T +SKQ+LPIY+KPMIYYP+S LM AGIREILII+TP D
Sbjct: 4 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGY 63
Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120
+ LG G ++G+Q Y EQ P GLAQ++I+G F+ S L+LGDN+F+G S
Sbjct: 64 FQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLNGEPSCLVLGDNIFFGQGFSPKL 123
Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180
AR ATV G V +P+R+GVVE D + +AIS+EEKP PKS++AVTG+YFYD +V
Sbjct: 124 RHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAISLEEKPKQPKSNWAVTGLYFYDSKV 183
Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240
V A+ ++PS RGELEIT +N YL+ G L VE L G AW D GT +SL++ + FV+ +
Sbjct: 184 VEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFVQTV 243
Query: 241 ENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKKKR 291
E R G +AC EEIA+R+ ++++ + + YG YL +++ + R
Sbjct: 244 EKRQGFKIACLEEIAWRNGWLDDEGVKRAASSLAKTGYGQYLLELLRARPR 294
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide
complex, nucleotide binding fold, structural genomics,
PSI; HET: TYD; 1.70A
{Methanothermobacterthermautotrophicus} SCOP: c.68.1.6
Length = 295
Score = 352 bits (904), Expect = 6e-98
Identities = 155/289 (53%), Positives = 203/289 (70%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
MKGIVLAGGSGTRL P+T +SKQ+LPIY+KPMIYYP+S LM AGIR+ILIISTPRDLP+
Sbjct: 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63
Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120
++ LG G ++GV+FSY Q P G+A ++I+G +FIGDS L+LGDNVFYG S+I
Sbjct: 64 YRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIGDSKVALVLGDNVFYGHRFSEIL 123
Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180
+A + + A + G +V++P+ +GVVE DS + ISIEEKP+ PKS++ V G+YFYD +V
Sbjct: 124 RRAASLEDGAVIFGYYVRDPRPFGVVEFDSEGRVISIEEKPSRPKSNYVVPGLYFYDNQV 183
Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240
V IAR I PS RGELEIT VN YL G L VE + G AW D GT + LL+ + F+ I
Sbjct: 184 VEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIETI 243
Query: 241 ENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKK 289
+ R G Y+AC EEIAY + +I ++ + + YG YLR + E
Sbjct: 244 QKRQGFYIACLEEIAYNNGWITREDVLEMAEKLEKTDYGKYLRDLAEGN 292
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose,
nucleotidyltransferase, pyrophosphorylase, allostery;
HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6
PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A*
1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B*
1h5t_B* 1iim_A* 1iin_A* 1mp5_A* 1mp3_A* 1mp4_A*
Length = 293
Score = 286 bits (732), Expect = 5e-78
Identities = 158/289 (54%), Positives = 210/289 (72%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
KGI+LAGGSGTRL P T +SKQ+LP+Y+KPMIYYP+STLM AGIREILIISTP+D P
Sbjct: 3 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPR 62
Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120
++ LG G WG+ Y Q P GLAQ++++G FIG+ S L+LGDN++YG D ++
Sbjct: 63 FQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELL 122
Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180
A R+ A+V HV +P+RYGVVE D +AIS+EEKP PKS++AVTG+YFYDQ+V
Sbjct: 123 GSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQV 182
Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240
V+IAR+++PS RGELEITDVN YL++G L+VE + G AW D GT +SLL+ F+ +
Sbjct: 183 VDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATL 242
Query: 241 ENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKK 289
ENR GL VACPEEIAYR +I+ +Q +L + YG YL++++ +
Sbjct: 243 ENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTET 291
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A
{Helicobacter pylori} PDB: 3juj_A*
Length = 281
Score = 206 bits (524), Expect = 7e-54
Identities = 62/276 (22%), Positives = 113/276 (40%), Gaps = 38/276 (13%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
K + A G GTR P+T + K+MLPI +KP+I Y V M+AG + I++ +
Sbjct: 3 KKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSL 62
Query: 61 LKEF----------LGSGEKWG----------VQFSYIEQLVPAGLAQSYILGAEFIGDS 100
F G+ ++ FSY+ Q GL + + G IG+
Sbjct: 63 EDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGNE 122
Query: 101 SSVLILGDNVFYGSDISDIFHK-----ARARRNSATVVGCHVQNPQRY----GVVEVDSS 151
+IL D++ D + + + + + + ++ +Y G +
Sbjct: 123 PFAVILADDLCISHDHPSVLKQMTSLYQKYQCSIVAIEEVALEEVSKYGVIRGEWLEEGV 182
Query: 152 NQAISIEEKPN--NPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKG- 208
+ + EKPN + S+ AV G Y ++ I +P E++ITD +
Sbjct: 183 YEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQITDALRTQAKRKR 242
Query: 209 LLAVEFLREGSAWFDAGTPESLLDTAVFV---RNIE 241
++A +F +G +D G+ E ++ + R +E
Sbjct: 243 IIAYQF--KG-KRYDCGSVEGYIEASNAYYKKRLLE 275
>3hl3_A Glucose-1-phosphate thymidylyltransferase; IDP01254, sucrose,
structural genomics, center for structural genomics of
infectious diseases; HET: SUC; 2.76A {Bacillus
anthracis}
Length = 269
Score = 205 bits (522), Expect = 1e-53
Identities = 101/241 (41%), Positives = 149/241 (61%), Gaps = 4/241 (1%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
MKGI+LAGG+G+RL P+T + +K +LP+ PMIY+ V L I +I+II+ +
Sbjct: 25 MKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHMGD 84
Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120
+ FLGSG+++GV F+Y Q G+AQ+ L +F+G+ V+ILGDN + DI
Sbjct: 85 VVSFLGSGQEFGVSFTYRVQDKAGGIAQALGLCEDFVGNDRMVVILGDN-IFSDDIRPYV 143
Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180
+ ++ A V+ V +P+R+GV + + + I IEEKP PKSS+AVTGIY YD +V
Sbjct: 144 EEFTNQKEGAKVLLQSVDDPERFGVANIQ-NRKIIEIEEKPKEPKSSYAVTGIYLYDSKV 202
Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240
+ + ++PSARGELEITD+N++YL +G+L + W DAGT SL R+I
Sbjct: 203 FSYIKELKPSARGELEITDINNWYLKRGVLTYNEMSG--WWTDAGTHVSLQRANALARDI 260
Query: 241 E 241
Sbjct: 261 N 261
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase;
beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Length = 401
Score = 158 bits (401), Expect = 9e-40
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 15/236 (6%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
MK +LA GSG RL P+T K +PI +KP+I Y + L GIR+I +I + ++
Sbjct: 1 MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNKEY 60
Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120
++ L + S + Q + IL A+F + LI+ ++F+ ++
Sbjct: 61 FEKKLK-------EISIVTQKDDIKGTGAAILSAKFNDE---ALIIYGDLFF---SNEKE 107
Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180
++G V NP+ YGV+ +D+ N I EKP P S+ GIY + ++
Sbjct: 108 ICNIITLKENAIIGVKVSNPKDYGVLVLDNQNNLSKIIEKPEIPPSNLINAGIYKLNSDI 167
Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVF 236
I S RGELE+TD + V+ + W D G P +++D +
Sbjct: 168 FTYLDKISISERGELELTDAINLMAKDH--RVKVIEYEGYWMDIGKPWNIIDVNKW 221
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU
pyrophosphorylase, nucleotidyltransferase; HET: G1P;
2.65A {Sphingomonas elodea}
Length = 297
Score = 155 bits (391), Expect = 1e-38
Identities = 54/266 (20%), Positives = 97/266 (36%), Gaps = 32/266 (12%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIIS------- 53
K + G GTR P T + K+MLP+ ++P+I Y V ++AGI +++ ++
Sbjct: 15 RKAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSAL 74
Query: 54 ------------TPRDLPVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSS 101
T + L +Y+ Q P GL + + +GD
Sbjct: 75 EDHFDIAYELEATMAARGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVGDEP 134
Query: 102 SVLILGDNVFYGSDIS-DIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQ------- 153
++L D+ +G A + + V + Q + + Q
Sbjct: 135 FAVLLPDDFMFGQPGCLKQMVDAYNKVGGNLICAEEVPDDQTHRYGIITPGTQDGVLTEV 194
Query: 154 -AISIEEKPNNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKG-LLA 211
+ + P S+ +V G Y EV+ I N A GE+++TD +
Sbjct: 195 KGLVEKPAPGTAPSNLSVIGRYILQPEVMRILENQGKGAGGEIQLTDAMQRMIGDQPFHG 254
Query: 212 VEFLREGSAWFDAGTPESLLDTAVFV 237
V F +G+ +D G + + V
Sbjct: 255 VTF--QGT-RYDCGDKAGFIQANLAV 277
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose,
carbohydrate, pyrophosphorylase; 1.95A {Escherichia
coli}
Length = 302
Score = 154 bits (389), Expect = 2e-38
Identities = 55/294 (18%), Positives = 102/294 (34%), Gaps = 50/294 (17%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
K ++ G GTR+ P T + K+MLP+ +KP+I Y V+ + AGI EI++++ +
Sbjct: 9 KKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSI 68
Query: 61 LKEFLGSGE---------------------KWGVQFSYIEQLVPAGLAQSYILGAEFIGD 99
F S E V + Q + GL + + +GD
Sbjct: 69 ENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGD 128
Query: 100 SSSVLILGDNVFYGSDISDIFH------KARARRNSATVVGCHVQNPQRYGVVEVDSSNQ 153
+IL D + + + + ++ V + YGVV+
Sbjct: 129 EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGVVDCKGVEL 188
Query: 154 AISIEEK---------PNNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYY 204
A + S+ A+ G Y ++ + P A E+++TD
Sbjct: 189 APGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDML 248
Query: 205 LDKGLLAVEFLREGSAWFDAGTPESLLDTAV------------FVRNIENRLGL 246
++K + ++ D G + V F +E +G+
Sbjct: 249 IEKETVEAYHMKG--KSHDCGNKLGYMQAFVEYGIRHNTLGTEFKAWLEEEMGI 300
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase,
nucleotidyltransferase, metabolism; HET: GUD; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 323
Score = 145 bits (367), Expect = 8e-36
Identities = 57/267 (21%), Positives = 99/267 (37%), Gaps = 33/267 (12%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
+V A G GTR P T + K++LP+ + P I + + G + II+ P V
Sbjct: 13 KTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNKAGV 72
Query: 61 LKEFLGSGE--------------------KWGVQFSYIEQLVPAGLAQSYILGAEFIGD- 99
L F S E ++ + Q P GL + L + D
Sbjct: 73 LAHFERSSELEETLMERGKTDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDD 132
Query: 100 ---SSSVLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAIS 156
+ +L + G +A + V + +YG+ E+++ +
Sbjct: 133 EDVVAVMLPDDLVLPTGVMERMAQVRAEFGGSVLCAVEVSEADVSKYGIFEIEADTKDSD 192
Query: 157 IEEK--------PNNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKG 208
+++ + S A TG Y D+++ + R I P A GEL++TD +D+G
Sbjct: 193 VKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRITPGAGGELQLTDAIDLLIDEG 252
Query: 209 LLAVEFLREGSAWFDAGTPESLLDTAV 235
+ +G D G P + V
Sbjct: 253 HPVHIVIHQGK-RHDLGNPGGYIPACV 278
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure,
CTP:phosphocholine cytidylyltransferase; 1.50A
{Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Length = 254
Score = 143 bits (362), Expect = 3e-35
Identities = 47/256 (18%), Positives = 94/256 (36%), Gaps = 36/256 (14%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
+K I+LA G GTRLRPLT+ K ++ + KP+I Y + L + GI +I+II
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQF 85
Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120
EK+GV+ + ++ S L E + +S + DN + + +
Sbjct: 86 DYLK----EKYGVRLVFNDKYADYNNFYSLYLVKEELANSYVIDA--DNYLFKNMFRNDL 139
Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180
+ +T + ++ + + I K+ ++G+ F+D
Sbjct: 140 TR-------STYFSVYREDCTNEWFLVYGDDYKVQDIIVD---SKAGRILSGVSFWDAPT 189
Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240
+ A E D+ ++D +++ + V+V +
Sbjct: 190 AEKIVSFIDKAYVSGEFVDL--------------------YWDNMVKDNIKELDVYVEEL 229
Query: 241 ENRLGLYVACPEEIAY 256
E + ++
Sbjct: 230 EGNSIYEIDSVQDYRK 245
>2x65_A Mannose-1-phosphate guanylyltransferase; GDP-mannose biosynthesis,
nucleotidyltransferas; HET: M1P; 2.10A {Thermotoga
maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Length = 336
Score = 140 bits (353), Expect = 4e-34
Identities = 38/268 (14%), Positives = 81/268 (30%), Gaps = 36/268 (13%)
Query: 1 MKGIVLAGGSGTRLRPL-TDLLSKQMLPIY-NKPMIYYPVSTL-MDAGIREILIISTPRD 57
MK ++LAGGSG R PL T KQ L ++ NK ++ + + + +++++++
Sbjct: 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDY 61
Query: 58 LPVLKEFLGSGEKWGVQFSY--IEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSD 115
+ K+ L + + E + + + D +
Sbjct: 62 VERTKKELPELPDENIIAEPMKKNTAPACFIGTKLADDDEPVLVLPADHRIPDTKKFWKT 121
Query: 116 ISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAIS------IEEKPNNPKSSFA 169
+ T + YG +E+ + E+ F
Sbjct: 122 VKKALDALEKYDGLFTFGIVPTRPETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKFV 181
Query: 170 VTGIYFYDQEVVNIA--------RNIRPSARGELEITD-----------------VNSYY 204
+G + ++ + + PS L+ D Y
Sbjct: 182 ESGRFLWNSGMFLWKAREFIEEVKVCEPSIYENLKDVDPRNFEELKKAYEKVPSISVDYA 241
Query: 205 LDKGLLAVEFLREGSAWFDAGTPESLLD 232
+ + V ++ W D G S+ +
Sbjct: 242 VMEKSKKVRVVKADFEWSDLGNWSSVRE 269
>3dk5_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann-like fold, LEFT-handed-beta-helix, trimer, cell
shape; 2.23A {Mycobacterium tuberculosis} PDB: 3d8v_A
3d98_A* 3dj4_A 3foq_A 2qkx_A*
Length = 495
Score = 121 bits (303), Expect = 2e-28
Identities = 28/179 (15%), Positives = 65/179 (36%), Gaps = 7/179 (3%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63
+VLA G GTR+R T K + + + M+ + + + + ++++ +
Sbjct: 10 LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 66
Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIG----DSSSVLILGDNVFYGSDISDI 119
+ G Q P G + + G + + V + ++D+
Sbjct: 67 VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 126
Query: 120 FHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQ 178
RA + TV+ + +P YG + ++ ++I E+ + S + +
Sbjct: 127 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVY 185
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose
synthase, ADP-glucose pyrophosphorylase, agpase B; HET:
PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6
PDB: 1yp3_A* 1yp4_A*
Length = 451
Score = 112 bits (281), Expect = 7e-26
Identities = 58/309 (18%), Positives = 105/309 (33%), Gaps = 45/309 (14%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPI-YNKPMIYYPVSTLMDAGIREILIISTPRDLP 59
+ GI+L GG+GTRL PLT +K +P+ N +I PVS +++ I +I +++
Sbjct: 21 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSAS 80
Query: 60 VLKEF-------LGSGEKWGVQFSYIEQLVPA----------GLAQSYILGAEFIGDSSS 102
+ + +G + G Q P + Q L E
Sbjct: 81 LNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVL--E 138
Query: 103 VLILGDNVFYGSDISDIFHKARARRNSATV--VGCHVQNPQRYGVVEVDSSNQAISIEEK 160
LIL + Y D R TV + + +G++++D + I EK
Sbjct: 139 YLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEK 198
Query: 161 PNNPK---------------------SSFAVTGIYFYDQEVVNIARNIRPSARGELEITD 199
P + A GIY ++V+ + ++
Sbjct: 199 PQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFP-GANDFGSE 257
Query: 200 VNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNIENRLGLYVACPEEIAYRHD 259
V G+ +L +G W D GT E+ + + + + I +
Sbjct: 258 VIPGATSLGMRVQAYLYDGY-WEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPR 316
Query: 260 FINESQFFQ 268
++ S+
Sbjct: 317 YLPPSKMLD 325
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape,
transferase, peptidoglycan synthesis, associative
mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A*
2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A*
Length = 456
Score = 110 bits (276), Expect = 3e-25
Identities = 42/214 (19%), Positives = 83/214 (38%), Gaps = 14/214 (6%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
+ ++LA G GTR+ K + I KPM+ + + T G I +I +
Sbjct: 6 LSAVILAAGKGTRMYSDL---PKVLHTIAGKPMVKHVIDTAHQLGSENIHLI-YGHGGDL 61
Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120
++ L + Q +++ Q G A + A F D+ ++++L + + +
Sbjct: 62 MRTHLANE-----QVNWVLQTEQLGTAHAVQQAAPFFKDNENIVVLYGDAPLITKETLEK 116
Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPN---NPKSSFAVTGIYFYD 177
N ++ ++ NP YG + ++ N +E+K TG+ D
Sbjct: 117 LIEAKPENGIALLTVNLDNPTGYGRIIRENGNVVAIVEQKDANAEQLNIKEVNTGVMVSD 176
Query: 178 QEVV--NIARNIRPSARGELEITDVNSYYLDKGL 209
+AR +A+GE +TD+ +
Sbjct: 177 GASFKKWLARVGNNNAQGEYYLTDLIALANQDNC 210
>1hv9_A UDP-N-acetylglucosamine pyrophosphorylase; LEFT-handed parallel
beta-helix, transferase; HET: COA UD1; 2.10A
{Escherichia coli} SCOP: b.81.1.4 c.68.1.5 PDB: 2oi5_A*
2oi6_A* 2oi7_A* 3fww_A 1fxj_A* 1fwy_A*
Length = 456
Score = 107 bits (266), Expect = 4e-24
Identities = 39/214 (18%), Positives = 81/214 (37%), Gaps = 14/214 (6%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
M ++LA G GTR+ K + + K M+ + + + G + ++ +
Sbjct: 6 MSVVILAAGKGTRMYSDL---PKVLHTLAGKAMVQHVIDAANELGAAHVHLV-YGHGGDL 61
Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120
LK+ L +++ Q G + A F D +L+L +V S +
Sbjct: 62 LKQALKDDN-----LNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQR 116
Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPN---NPKSSFAVTGIYFYD 177
+ + ++ + +P YG + ++ +E K + TGI +
Sbjct: 117 LRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIAN 176
Query: 178 QEVV--NIARNIRPSARGELEITDVNSYYLDKGL 209
+ +A+ +A+GE ITD+ + +G
Sbjct: 177 GADMKRWLAKLTNNNAQGEYYITDIIALAYQEGR 210
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransferase;
acetyltransferase, bifunctional, crystallography, drug
design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae}
SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 1g97_A*
1g95_A*
Length = 468
Score = 103 bits (257), Expect = 4e-23
Identities = 37/215 (17%), Positives = 79/215 (36%), Gaps = 19/215 (8%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63
I+LA G GTR++ K + + M+ + ++ + + + +++E
Sbjct: 15 IILAAGKGTRMKSDL---PKVLHKVAGISMLEHVFRSVGAIQPEKTVTV-VGHKAELVEE 70
Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSS---VLILGDNVFYGSDISDIF 120
L ++ Q G + ++ + S V+ + G + ++
Sbjct: 71 VLAGQ------TEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLI 124
Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISI----EEKPNNPKSSFAVTGIYFY 176
+N AT++ NP YG + + + + + I + + TG Y +
Sbjct: 125 DFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYVF 184
Query: 177 DQEV--VNIARNIRPSARGELEITDVNSYYLDKGL 209
D E + +A+GE ITDV + + G
Sbjct: 185 DNERLFEALKNINTNNAQGEYYITDVIGIFRETGE 219
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase,
mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella
enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Length = 259
Score = 98.2 bits (243), Expect = 2e-21
Identities = 45/252 (17%), Positives = 86/252 (34%), Gaps = 33/252 (13%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
K ++LAGG GTRL T + K M+ I KP++++ + GI++ II V
Sbjct: 3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDF-IICCGYKGYV 61
Query: 61 LKEFLGSGEKWGVQF---------------------SYIEQLVPAGLAQSYILGAEFIGD 99
+KE+ + + ++ + AE++ D
Sbjct: 62 IKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKD 121
Query: 100 SSSVLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEE 159
+ L + DI +A AT+ P R+G +++ + +
Sbjct: 122 DEAFLFTYGDGVADLDIKATIDFHKAHGKKATL--TATFPPGRFGALDIQ--AGQVRSFQ 177
Query: 160 KPNNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGS 219
+ + G + + V+++ N + E +T L+A E G
Sbjct: 178 EKPKGDGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQ----QGELMAFEH--PG- 230
Query: 220 AWFDAGTPESLL 231
W T +
Sbjct: 231 FWQPMDTLRDKV 242
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose
pyrophosphorylase, allostery, kinetics,
structure-function relationships; 2.10A {Agrobacterium
tumefaciens}
Length = 420
Score = 95.8 bits (237), Expect = 9e-21
Identities = 43/224 (19%), Positives = 72/224 (32%), Gaps = 18/224 (8%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKP-MIYYPVSTLMDAGIREILIISTPRDLP 59
VLAGG G+RL+ LTD +K + K +I + +S +++GIR I + T
Sbjct: 13 AMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVA-TQYKAH 71
Query: 60 VLKEFLGSGEKWG------------VQFSYIEQLVPAGLAQSYILGAEFIGDSSS--VLI 105
L L G + E G A + + I + ++I
Sbjct: 72 SLIRHLQRGWDFFRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVI 131
Query: 106 LGDNVFYGSDISDIFHKARARRNS--ATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNN 163
L + Y D + + + +GV+ V+ ++ I EKP +
Sbjct: 132 LAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDEIIDFIEKPAD 191
Query: 164 PKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDK 207
P G + A +S K
Sbjct: 192 PPGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGK 235
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI,
protein structure initiative, nysgrc; 2.30A
{Helicobacter pylori 26695}
Length = 308
Score = 87.7 bits (216), Expect = 3e-18
Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 9/172 (5%)
Query: 1 MKGIVLAGGSGTRLRPL-TDLLSKQMLPIYNKPMIYYPVSTL-MDAGIREILIISTPRDL 58
+K I+L+GGSG RL PL L KQ L +++ ++ + +A + + +I
Sbjct: 5 IKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFE--LSFKRNASLVDETLIVCNEKH 62
Query: 59 PVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDIS- 117
L E ++ + + A + L A +++ + +
Sbjct: 63 YFLALEEIKNEIKNKSVGFLLESLSKNTANAIALSALMSDKEDLLIVTPSDHLIKDLQAY 122
Query: 118 ----DIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPK 165
+ T + +G +E + EKP+ K
Sbjct: 123 ENAIKKAIDLAQKGFLVTFGVSIDKPNTEFGYIESPNGLDVKRFIEKPSLDK 174
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;
nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A
{Streptococcus pneumoniae} PDB: 2vsi_A*
Length = 236
Score = 69.7 bits (169), Expect = 6e-13
Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 6/230 (2%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
+ +LAGG+GTR+ L KQ L + ++P++ + + + E +++ D
Sbjct: 3 IYAGILAGGTGTRMG--ISNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVS 60
Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120
E L + I A S E I D+ L D V +
Sbjct: 61 HAEDLVDKYLPLYKERIIITKGGADRNTSIKNIIEAI-DAYRPLTPEDIVVTHDSVRPFI 119
Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180
+ N + V + S I + PN T F ++
Sbjct: 120 TLRMIQDNIQLAQNHDAVDTVVEAVDTIVESTNGQFITDIPNRAHLYQGQTPQTFRCKDF 179
Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESL 230
+++ ++ S + +TD ++ KG V + + T L
Sbjct: 180 MDLYGSL--SDEEKEILTDACKIFVIKG-KDVALAKGEYSNLKITTVTDL 226
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.90A {Thermus thermophilus HB8}
SCOP: c.68.1.19
Length = 232
Score = 64.9 bits (157), Expect = 2e-11
Identities = 35/247 (14%), Positives = 69/247 (27%), Gaps = 32/247 (12%)
Query: 1 MK--GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDL 58
M+ IVLAGG SK ++P +PM+ + + L AG+ + + P +
Sbjct: 1 MRPSAIVLAGGKEAWAERFGVG-SKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLV 59
Query: 59 PVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISD 118
P L ++ E + V +
Sbjct: 60 PAPALTLPDRGGL---------------LENLEQALEHVEGRVLVATGDIPHLTEEAVRF 104
Query: 119 IFHKARARRNSATVVGCHV---QNPQRYGVV----EVDSSNQAISIEEKPNNPKSSFAVT 171
+ KA +V + P+ E + + + +K K+
Sbjct: 105 VLDKAPEAALVYPIVPKEAVEARFPRTKRTYARLREGTFTGGNLLLLDKSLFRKALPLAR 164
Query: 172 GIYFYDQEVVNIARNIRPSA-----RGELEITDVNSY--YLDKGLLAVEFLREGSAWFDA 224
+ + + +AR + G L + +V + + D
Sbjct: 165 RVVALRKRPLALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDV 224
Query: 225 GTPESLL 231
E L+
Sbjct: 225 DREEDLV 231
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2; structural genomics, PSI-2, protein structure
initiative; 2.30A {Listeria monocytogenes str}
Length = 246
Score = 59.9 bits (144), Expect = 7e-10
Identities = 40/213 (18%), Positives = 73/213 (34%), Gaps = 19/213 (8%)
Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLP-- 59
+LAGG GTR+ ++ + KQ LP+ KP+I + V + +ILI S +
Sbjct: 6 AQILAGGKGTRMGNVS--MPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHA 63
Query: 60 -VLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLIL-GDNVFYGSD-I 116
+ S ++ V ++ ++ + D ++ F I
Sbjct: 64 EDNIKKYISDDRIVVIEGGEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRII 123
Query: 117 SDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFY 176
+ A TV+ +VE + I + P T F
Sbjct: 124 EENIDAALETGAVDTVI------EALDTIVESSNHEV---ITDIPVRDHMYQGQTPQSFN 174
Query: 177 DQEVVNIARNIRPSARGELEITDVNSYYLDKGL 209
++V N +N+ + + +TD L G
Sbjct: 175 MKKVFNHYQNL--TPEKKQILTDACKICLLAGD 205
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium
tuberculosis H37RV} PDB: 2we9_A
Length = 197
Score = 57.3 bits (138), Expect = 4e-09
Identities = 33/186 (17%), Positives = 56/186 (30%), Gaps = 19/186 (10%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
+ G+VLA G RL KQ+LP + ++ + AG ++++ V
Sbjct: 6 ITGVVLAAGRSNRLGT-----PKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASAV 60
Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSS--VLILGDNVFYGSD-IS 117
G V G A S + + ++ VL+LGD +
Sbjct: 61 RAAMALDGTDVVVVEDVER-----GCAASLRVALARVHPRATGIVLMLGDQPQVAPATLR 115
Query: 118 DIFHKARARRNSATVVGCHVQNPQRYG------VVEVDSSNQAISIEEKPNNPKSSFAVT 171
I A V +P + + + + +P AV
Sbjct: 116 RIIDVGPATEIMVCRYADGVGHPFWFSRTVFGELARLHGDKGVWKLVHSGRHPVRELAVD 175
Query: 172 GIYFYD 177
G D
Sbjct: 176 GCVPLD 181
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer,
alpha-beta-alpha, transferase; 2.00A {Neisseria
meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Length = 228
Score = 56.1 bits (134), Expect = 9e-09
Identities = 20/229 (8%), Positives = 63/229 (27%), Gaps = 20/229 (8%)
Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62
++LA + L K + + ++ + ++ + + + +I+ST + +
Sbjct: 7 AVILARQNSKGLP------LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTD-GGLIAE 59
Query: 63 EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLIL-GDNVFYGSDISDIFH 121
E G + ++ + + + ++ +S +V +L +
Sbjct: 60 EAKNFGVEVVLRPAELASDTASSISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAF 119
Query: 122 KARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVV 181
+ +VV + ++ + + + Q
Sbjct: 120 SLFDEKIKGSVVSACPMEHHPLKTLLQINNGEYAPMRHLSDLE---------QPRQQLPQ 170
Query: 182 NIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESL 230
N + N +++ ++ D T L
Sbjct: 171 AFRPNGAIYINDTASLIANNCFFIAP---TKLYIMSHQDSIDIDTELDL 216
>2cu2_A Putative mannose-1-phosphate guanylyl transferase;
mannose-1-phosphate guanyltransferase, structural
genomics; 2.20A {Thermus thermophilus HB8} SCOP:
b.81.4.1 c.68.1.20
Length = 337
Score = 56.1 bits (134), Expect = 9e-09
Identities = 32/183 (17%), Positives = 58/183 (31%), Gaps = 14/183 (7%)
Query: 1 MK--GIVLAGGSGTRLRPL-TDLLSKQMLPIY-NKPMIYYPVSTLMDAGIREILIISTPR 56
MK +V+AGG G RL PL + K LP++ K ++ + L E +++ R
Sbjct: 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRR 60
Query: 57 DLPVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDI 116
D +E + G++ A + + +L+L + + G D
Sbjct: 61 D----QEAVARPYADGIRLLLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDE 116
Query: 117 SDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFY 176
+ A + G V G+ + I P +
Sbjct: 117 AYREALATMLEAAEE--GFVVA----LGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKP 170
Query: 177 DQE 179
Sbjct: 171 SYA 173
>3okr_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TB structural
genomics consortium, TBSGC, tryptophan synthes
2-C-methyl-D-erythritol 4-phosphate cytidyltransferase;
2.40A {Mycobacterium tuberculosis}
Length = 231
Score = 55.5 bits (133), Expect = 1e-08
Identities = 30/197 (15%), Positives = 61/197 (30%), Gaps = 14/197 (7%)
Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62
IV A GSG RL + K + + +I V L+D+G+ + ++++ P D
Sbjct: 10 AIVPAAGSGERLAVG---VPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEA 66
Query: 63 EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFHK 122
+ V +L + V + + ++ +
Sbjct: 67 RQILGHRAMIVAGGSNRT--DTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEA 124
Query: 123 ARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVVN 182
R + V P + VD++ + E+ AV + +++
Sbjct: 125 LRDGYAAVVPV-----LPLSDTIKAVDANGVVLGTPER----AGLRAVQTPQGFTTDLLL 175
Query: 183 IARNIRPSARGELEITD 199
+ E TD
Sbjct: 176 RSYQRGSLDLPAAEYTD 192
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A;
molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A
{Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A*
1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Length = 201
Score = 51.4 bits (122), Expect = 2e-07
Identities = 31/230 (13%), Positives = 65/230 (28%), Gaps = 49/230 (21%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
+ G+VLAGG R+ + K +L + KP+ + LM ++ + +++
Sbjct: 7 ITGVVLAGGKARRMGG----VDKGLLELNGKPLWQHVADALMTQLSHVVVNANRHQEIY- 61
Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120
+ G++ G + + + D + D
Sbjct: 62 --------QASGLKVIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDTPYIPPD--LAA 111
Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180
R+++ V + + + + + + E
Sbjct: 112 RLNHQRKDAPVVW--VHDGERDHPTIALVNRAIEPLLLEYL------------------- 150
Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESL 230
GE + G AV+F A+ + TPE L
Sbjct: 151 ----------QAGERRVMVF---MRLAGGHAVDFSDHKDAFVNVNTPEEL 187
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A
{Mycobacterium SP}
Length = 199
Score = 50.8 bits (121), Expect = 3e-07
Identities = 22/145 (15%), Positives = 47/145 (32%), Gaps = 9/145 (6%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
+ G+VLA G RL KQ+LP+ + ++ ++ ++++ V
Sbjct: 6 VTGVVLAAGYSRRLGT-----PKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAADEV 60
Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSD-ISDI 119
L++ G + + L VL+LGD + ++ +
Sbjct: 61 LEKVELDGLDIVLVDDAGLG---CSSSLKSALTWVDPTAEGIVLMLGDQPGITASAVASL 117
Query: 120 FHKARARRNSATVVGCHVQNPQRYG 144
R + + +P
Sbjct: 118 IAGGRGATIAVCEYANGIGHPFWVS 142
>1w77_A 2C-methyl-D-erythritol 4-phosphate cytidylyltransferase;
plantherbicide, non-mevalonate pathway, isoprenoid;
HET: C5P; 2.00A {Arabidopsis thaliana} SCOP: c.68.1.13
Length = 228
Score = 50.4 bits (119), Expect = 4e-07
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRD 57
I+LAGG G R++ KQ +P+ +P+ Y T + +++
Sbjct: 8 ILLAGGQGKRMKMSM---PKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPF 58
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TM1393,
structural genomics, JCSG, joint center for structural
genomics, PSI; HET: CTP; 2.67A {Thermotoga maritima}
SCOP: c.68.1.13
Length = 234
Score = 49.3 bits (116), Expect = 1e-06
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 1 MK-GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRD 57
M I+LA G G R+ + + KQ L I + + YP+ST + + + ++I T R+
Sbjct: 13 MNVAILLAAGKGERMS---ENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRRE 67
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium; 2.80A {Sulfolobus solfataricus}
Length = 197
Score = 47.9 bits (113), Expect = 3e-06
Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 20/149 (13%)
Query: 1 MK--GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDL 58
M I+LA G G R K + I N P+I + + +I+I+ +
Sbjct: 1 MNIGVIILAAGEGKRFGG-----DKLLAKIDNTPIIMRTIRIY--GDLEKIIIVGKYVNE 53
Query: 59 PVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLI-LGDNVFYGSDIS 117
+ Q G++ S LG F D +VL+ LGD F +
Sbjct: 54 ML--------PLLMDQIVIYNPFWNEGISTSLKLGLRFFKDYDAVLVALGDMPFVTKE-- 103
Query: 118 DIFHKARARRNSATVVGCHVQNPQRYGVV 146
D+ + + V + + V+
Sbjct: 104 DVNKIINTFKPNCKAVIPTHKGERGNPVL 132
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase;
cytidylyltransferase, deoxyxylulose-5-phosphate pathway
(DXP), isoprenoid biosynthesys; HET: CTP; 1.50A
{Escherichia coli K12} SCOP: c.68.1.13 PDB: 1ini_A*
1inj_A 1vgt_A 1vgu_A 1h3m_A
Length = 236
Score = 46.8 bits (110), Expect = 5e-06
Identities = 34/206 (16%), Positives = 61/206 (29%), Gaps = 16/206 (7%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63
+V A G G R++ KQ L I N+ ++ + V L+ + ++I+ +
Sbjct: 11 VVPAAGFGRRMQ---TECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQ 67
Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFHKA 123
A S + G + GD+ VL+ D D+
Sbjct: 68 L-----PLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVH-DAARPCLHQDDLARLL 121
Query: 124 RARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVVNI 183
S T E + A +++ A+T +F + + +
Sbjct: 122 ALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLW----HALTPQFFPRELLHDC 177
Query: 184 ARNIRPSARGELEITDVNSYYLDKGL 209
ITD S G
Sbjct: 178 LTRA---LNEGATITDEASALEYCGF 200
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; structural
genomics, transferase; 2.35A {Neisseria gonorrhoeae}
SCOP: c.68.1.13 PDB: 1vgz_A
Length = 231
Score = 45.4 bits (106), Expect = 1e-05
Identities = 15/150 (10%), Positives = 43/150 (28%), Gaps = 8/150 (5%)
Query: 1 MK----GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMD-AGIREILIISTP 55
+K ++ A G G R KQ + I +K ++ + + + +++ +P
Sbjct: 3 LKRKNIALIPAAGIGVRFG---ADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSP 59
Query: 56 RDLPVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSD 115
D K + + + + +L ++ ++L+
Sbjct: 60 EDTFADKVQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPS 119
Query: 116 ISDIFHKARARRNSATVVGCHVQNPQRYGV 145
+ +A + +
Sbjct: 120 EALARLIEQAGNAAEGGILAVPVADTLKRA 149
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids,
nonmevalonate, transferase; HET: C GPP; 2.3A
{Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB:
1w57_A*
Length = 371
Score = 45.2 bits (106), Expect = 2e-05
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63
I+LA G+ TR + KQ L + N P+ Y L + +++++ ++ +K+
Sbjct: 7 IMLAAGNSTRFN---TKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-NITYMKK 62
Query: 64 FL 65
F
Sbjct: 63 FT 64
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;
TTHA0171, ISPD_THET8, ISPD, structural genomics PSI;
2.20A {Thermus thermophilus HB8}
Length = 236
Score = 45.0 bits (105), Expect = 2e-05
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 1 MK--GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRD 57
M+ ++ A G+G RL K L + + ++ + ++ D E+L+ P
Sbjct: 24 MEVSVLIPAAGNGLRLGRG----PKAFLQVGGRTLLEWTLAAFRD--AAEVLVALPPGA 76
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 44.5 bits (105), Expect = 3e-05
Identities = 55/344 (15%), Positives = 99/344 (28%), Gaps = 129/344 (37%)
Query: 8 GGSGTRLRPLTDLLSKQMLPIYNKPMIYYP-VSTLMDAGIREIL--IISTPRDLPVLKEF 64
GG G +L +Y Y+ V L+ E L +I T D ++
Sbjct: 161 GGQGNTDDYFEELRD-----LYQ---TYHVLVGDLIKF-SAETLSELIRTTLDA---EKV 208
Query: 65 LGSG---EKW--------GVQFSYIEQLVPA-------GLAQ--SY-----ILG---AEF 96
G +W + L+ G+ Q Y +LG E
Sbjct: 209 FTQGLNILEWLENPSNTPDKDY-----LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 97 I-------GDS----SSVLILGDNVFYGSDISDIFHKARARRNSATVV------GCHVQN 139
G S ++V I +D + F + + G
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAE------TDSWESFFV-----SVRKAITVLFFIGVRCY- 311
Query: 140 PQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELE--I 197
+ Y + S S+E P +++ + + +++ +
Sbjct: 312 -EAYPNTSLPPSILEDSLENNEGVPSPMLSISNL-----------------TQEQVQDYV 353
Query: 198 TDVNSYYL--DKGL-LAVEFLREGSAWFD-AGTPESLLDTAVFVRNIENRLGLYVACPEE 253
NS+ L K + ++ L G+ +G P+SL + +R + GL +
Sbjct: 354 NKTNSH-LPAGKQVEIS---LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS---R 406
Query: 254 IAYRH---DFINESQF------FQLIDHFGNSPYGLYLRQVVEK 288
I + F N +F F H S L +
Sbjct: 407 IPFSERKLKFSN--RFLPVASPF----H---SH---LLVPASDL 438
Score = 42.6 bits (100), Expect = 9e-05
Identities = 51/327 (15%), Positives = 86/327 (26%), Gaps = 124/327 (37%)
Query: 10 SGTRLRPLTDLLS----KQMLPIYNKPMIYYPV-STLMDAGIREILIISTPRDLPVLKEF 64
RPLT LS + +L + P + + S L + + + P + +
Sbjct: 2 DAYSTRPLT--LSHGSLEHVLLV---PTASFFIASQLQEQFNKI---LPEPTEGFAADD- 52
Query: 65 LGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFI---------GDSSSVL--ILGD---NV 110
E PA L ++ ++ G VL L +
Sbjct: 53 --------------EPTTPAELVGKFL---GYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
Query: 111 FYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVE-----VDSSNQAISIEEKP---- 161
G+DI H A+ + +++ + + +
Sbjct: 96 LEGNDI----HALAAKLLQENDTTL----VKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 162 --NNPKSS-FAVTG------IYF------YDQEVVNIARNIRPSAR--GEL--EITDVNS 202
+ A+ G YF Y V + I+ SA EL D
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 203 YYLDKGLLAVEFLREGSAWFDAGTPES------LLDTAVFVRNIENRLGL------YVAC 250
+ +GL L W + P + LL + I G+ V
Sbjct: 208 VFT-QGL---NIL----EWLE--NPSNTPDKDYLLSIPISCPLI----GVIQLAHYVVTA 253
Query: 251 ------PEEIAYR------HDFINESQ 265
P E+ H SQ
Sbjct: 254 KLLGFTPGELRSYLKGATGH-----SQ 275
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA);
alpha-beta protein, structural genomics, PSI-2, protein
STRU initiative; 2.31A {Archaeoglobus fulgidus}
Length = 208
Score = 41.5 bits (97), Expect = 2e-04
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 1 MKGIVLAGGSGTRL-RPLTDLLSKQMLPIYNKPMIYYPVSTL 41
MK VL GG G R+ K + + K +I + +
Sbjct: 1 MKVAVLVGGVGRRIGME------KTEVMLCGKKLIEWVLEKY 36
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for
structural genomics of infectious diseases; 1.75A
{Vibrio cholerae o1 biovar el tor}
Length = 252
Score = 38.3 bits (88), Expect = 0.002
Identities = 24/138 (17%), Positives = 38/138 (27%), Gaps = 12/138 (8%)
Query: 1 MK--GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDL 58
M ++ A TRL P K + I KPMI + M AG ++I + +
Sbjct: 1 MSFTVVIPARYQSTRL-P-----GKPLADIGGKPMIQWVYEQAMQAGADRVIIATDDERV 54
Query: 59 PVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISD 118
+ G V + + D V + GD I
Sbjct: 55 EQAVQAFG----GVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIR 110
Query: 119 IFHKARARRNSATVVGCH 136
A ++
Sbjct: 111 QVADNLAACSAPMATLAV 128
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural
genomics; 1.80A {Haemophilus influenzae} SCOP:
c.68.1.13 PDB: 1vh3_A 3duv_A*
Length = 262
Score = 37.0 bits (84), Expect = 0.005
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 1 MK--GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIIST 54
M I+ A + +RL K + I KPMI + + +G + II+T
Sbjct: 1 MSFTVIIPARFASSRLP------GKPLADIKGKPMIQHVFEKALQSGASRV-IIAT 49
>2e8b_A Probable molybdopterin-guanine dinucleotide biosynthesis protein
A; putative protein, molybdenum cofactor, structural
genomics, NPPSFA; 1.61A {Aquifex aeolicus VF5}
Length = 201
Score = 36.4 bits (83), Expect = 0.008
Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 7/54 (12%)
Query: 3 GIVLAGGSGTRL-RPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTP 55
VLAGG R K + I K +I T ++
Sbjct: 17 CYVLAGGKSKRFGED------KLLYEIKGKKVIERVYETAKSVFKEVYIVAKDR 64
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase
KDO complex, cytoplasm, lipopolysaccharide
biosynthesis, magnesium; HET: KDO CTP; 1.90A
{Escherichia coli} PDB: 3k8e_C 1vh1_A 3jtj_A*
Length = 264
Score = 30.9 bits (68), Expect = 0.33
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 1 MK--GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTP 55
M I+ A + TRL K ++ I KPMI + + ++G I++ +
Sbjct: 17 MSFVVIIPARYASTRLP------GKPLVDINGKPMIVHVLERARESGAERIIVATDH 67
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase;
CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC,
sialic acid, glycosylation; HET: NCC; 2.80A {Mus
musculus} SCOP: c.68.1.13
Length = 229
Score = 30.3 bits (67), Expect = 0.49
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTP 55
+VLA G + K + + P+I + + +DAG+ + + +ST
Sbjct: 6 ALVLARGGSKGIP------LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTD 52
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase;
nucleotidyltransferase, CMP-KDO synthetase, nucleoside
monophosphate glycosides; 1.83A {Escherichia coli}
SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A*
1h7g_A* 1h7h_A* 1h7t_A*
Length = 245
Score = 29.9 bits (66), Expect = 0.75
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIIST 54
++ A +RL K +L I KPMI + + + ++T
Sbjct: 6 VIPARYGSSRLP------GKPLLDIVGKPMIQHVYERALQVAGVAEVWVAT 50
>2ftz_A Geranyltranstransferase; TM0161, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima
MSB8}
Length = 284
Score = 29.2 bits (64), Expect = 1.0
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLM 42
M GG R+RPL L + L + + ++ V+ +
Sbjct: 38 MLYSATVGGX--RIRPLLVLTLGEDLGVEEEXLLDVAVAVEL 77
>1gnx_A Beta-glucosidase; hydrolase, glycosyltransferase, family 1 of
glycosyl hydrolase; HET: SUC; 1.68A {Streptomyces SP}
SCOP: c.1.8.4 PDB: 1gon_A
Length = 479
Score = 27.4 bits (60), Expect = 4.0
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 15/51 (29%)
Query: 141 QRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVVNIARNIRPSA 191
+R+G V VD PK+S +Y EV + P+A
Sbjct: 444 KRFGAVYVDYPTGT-------RIPKASA-----RWY-AEV--ARTGVLPTA 479
>1kn6_A Prohormone convertase 1; beta-alpha-beta-BETA-alpha-beta,
hydrolase; NMR {Mus musculus} SCOP: d.58.3.3
Length = 90
Score = 27.4 bits (61), Expect = 4.2
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 5/40 (12%)
Query: 252 EEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKKKR 291
IA + Q L +H Y + + +R
Sbjct: 27 SAIAEELGYDLLGQIGSLENH-----YLFKHKSHPRRSRR 61
>2dla_A 397AA long hypothetical protein; helix bundle, twisted beta-sheet,
replication; 2.90A {Pyrococcus horikoshii OT3}
Length = 222
Score = 27.1 bits (60), Expect = 4.3
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 251 PEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKKKRI 292
++ + + ++ +QF+ L+ SPYG+ L V + I
Sbjct: 51 IDKFLDQDNVMDLAQFYALLGALSYSPYGIELELVKKANLII 92
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ,
structural protein; 2.10A {Thermotoga maritima} SCOP:
c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A*
Length = 344
Score = 27.0 bits (59), Expect = 5.1
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 2 KGIVLAGGSGTRLRPLTDLLSK 23
+GI L GG + LR L LL K
Sbjct: 279 RGIFLTGGG-SLLRGLDTLLQK 299
>3gzs_A Uncharacterized SUSD superfamily protein; structural genomics,
joint center for structural genomics, JCSG; 2.09A
{Bacteroides fragilis nctc 9343}
Length = 515
Score = 26.9 bits (58), Expect = 6.3
Identities = 18/141 (12%), Positives = 36/141 (25%), Gaps = 19/141 (13%)
Query: 157 IEEKPNNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLA---VE 213
I P P Y + N+ +++ P VN Y + L
Sbjct: 5 INRNPLLPTKEDEKMDGVIYGAYLPNLEKSVIPIGTASESTEPVNRYQIGVNLAGDAWAG 64
Query: 214 FLREGSAWFDAGTPESLLD----------TAVFVRNIENRLGLYVACPEEIAYRHDFINE 263
++ F+ + + + + + +E +
Sbjct: 65 YMSPRDNKFNGSKNFTNYFMYENWVNYVYSFMVTDVYSPWMQIKRISQDEGTRNDEIYAL 124
Query: 264 SQ------FFQLIDHFGNSPY 278
+Q + D FG PY
Sbjct: 125 AQIIKIAALHRTTDMFGPIPY 145
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation,
coiled-coil, RNA binding protein; 3.10A {Sulfolobus
solfataricus}
Length = 255
Score = 26.3 bits (58), Expect = 7.9
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 270 IDHFGNSPYGLYLRQVVEKK 289
+D F G L + ++K+
Sbjct: 218 VDAFSGRFIGDQLNEQLKKR 237
>3id5_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation,
coiled-coil, methyltransferase, RNA-binding, rRNA
processing, transferase; HET: SAM; 4.01A {Sulfolobus
solfataricus}
Length = 388
Score = 26.4 bits (58), Expect = 8.5
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 270 IDHFGNSPYGLYLRQVVEKK 289
+D F G L + ++K+
Sbjct: 351 VDAFSGRFIGDQLNEQLKKR 370
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function,
PSI-2, protein structure initiative; 2.20A
{Archaeoglobus fulgidus} SCOP: c.116.1.8
Length = 178
Score = 26.2 bits (58), Expect = 8.9
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 15/89 (16%)
Query: 112 YGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVT 171
YG + + + VVG P+ Y E+ N +I P S A
Sbjct: 84 YGIPLPQKLEEIKRADKVLVVVGAEKVPPEVY---ELCDLNISIG-----TQPHSEVAAL 135
Query: 172 GIYF-------YDQEVVNIARNIRPSARG 193
++ +D + + PS RG
Sbjct: 136 AVFLDRVLGKVFDISFDDAKIKVIPSERG 164
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.139 0.404
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,591,673
Number of extensions: 122244
Number of successful extensions: 441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 58
Length of query: 292
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 200
Effective length of database: 3,462,782
Effective search space: 692556400
Effective search space used: 692556400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)