BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780922|ref|YP_003065335.1| glucose-1-phosphate
thymidylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (292 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 292

 Score =  598 bits (1541), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 292/292 (100%), Positives = 292/292 (100%)

Query: 1   MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
           MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV
Sbjct: 1   MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60

Query: 61  LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120
           LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF
Sbjct: 61  LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120

Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180
           HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV
Sbjct: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180

Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240
           VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI
Sbjct: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240

Query: 241 ENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKKKRI 292
           ENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKKKRI
Sbjct: 241 ENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKKKRI 292


>gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate uridylyltransferase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 299

 Score = 51.6 bits (122), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 101/235 (42%), Gaps = 40/235 (17%)

Query: 2   KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVL 61
           K +    G G R  P++ ++ K+ML I ++P+I Y +   ++AG+ + + + T R   ++
Sbjct: 9   KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFV-TGRGKGLI 67

Query: 62  KEFLG---------SGEKWGVQFSYIEQLVPA-------------GLAQSYILGAEFIGD 99
           K++                  + + + + +P+             GL  +       IGD
Sbjct: 68  KDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGD 127

Query: 100 SSSVLILGDNVF-------YGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSS- 151
           +   L+L D +          +++  ++ K  A  N   V  C  Q   +YG+V+V  + 
Sbjct: 128 NPFALLLPDMIMSPLEGENCMANMIKLYEKEGA--NILAVSECDPQLSCKYGMVQVGKAI 185

Query: 152 -NQAISIEEKPNNPKSS-----FAVTGIYFYDQEVVNIARNIRPS-ARGELEITD 199
            +Q   I +    P SS     F + G Y    ++ +I  + + +  +GE+++TD
Sbjct: 186 DHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTD 240


>gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine pyrophosphorylase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 442

 Score = 39.3 bits (90), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 44/199 (22%)

Query: 3   GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62
            IVLA G G R++  +   SK +  I  KPMI + + T+  AGI  + ++          
Sbjct: 7   AIVLAAGRGHRMKSSS---SKVLQKIAGKPMISHVMETIAAAGIENVALV---------- 53

Query: 63  EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSD------- 115
             LG G +   + ++     P  L+  Y +     G + +VL   D +  G D       
Sbjct: 54  --LGYGAEEITRINF-----PPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYG 106

Query: 116 -----ISDIFHKAR---ARRNSATVVGCHVQNPQRYG--------VVEVDSSNQAISIEE 159
                 S    KA    A+  S  VVG +  NP+ YG        ++ +   N A   E 
Sbjct: 107 DVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEER 166

Query: 160 KPNNPKSSF-AVTGIYFYD 177
           K +   S   A+ G+Y  D
Sbjct: 167 KIHYCNSGLMAIDGLYIMD 185


>gi|254780805|ref|YP_003065218.1| chromosome partitioning protein B [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 300

 Score = 29.6 bits (65), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 25/168 (14%)

Query: 116 ISDIFHKARARRNSATVVG---CHVQNPQRYGVVEVDSSNQAISIEE---KPNNPKSSFA 169
           +S+ + K R  R  A ++G     + +P++     +  S   ISI      P+NP++   
Sbjct: 1   MSNNYSKRRLGRGLAALIGEVNQSIDSPEKKTET-IPESQDCISIHSIVPNPHNPRN--- 56

Query: 170 VTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPES 229
               YF  + + ++ ++I+  + G ++   V +  +D GL  +     G   F A    S
Sbjct: 57  ----YFESEGLEDLCQSIK--SHGIIQPLIVRA--IDNGLYKIIA---GERRFRAAKMAS 105

Query: 230 LLDTAVFVRNIENRLGLYVACPEEIAYRHDF--INES-QFFQLIDHFG 274
           L +  V +RN++N+  L +A  E +  R D   + E+  + QLI  +G
Sbjct: 106 LSEVPVIIRNVDNKSSLEIAIVENVQ-RKDLNPLEEALGYEQLISEYG 152


>gi|254780551|ref|YP_003064964.1| tolQ protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 230

 Score = 26.2 bits (56), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 244 LGLYVACPEEIAYRHDFINESQFFQL-IDHFGNSPYGLYLRQ 284
           LGL V+ P  IAY + FI +S+ F + ++ F N    +  RQ
Sbjct: 184 LGLCVSIPSSIAY-NKFIEDSKKFAMQMEGFANEFSAILSRQ 224


>gi|254781208|ref|YP_003065621.1| hypothetical protein CLIBASIA_05575 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 578

 Score = 25.8 bits (55), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 210 LAVEFLREGSAWFDAGTPESLLDTAVFVRNIENRLGLYVACPEEIAYRHDFINESQFFQL 269
           L+++F R   +   A  P S+ D  VFV  +  R+  Y++   E  +R + I      QL
Sbjct: 422 LSIDFRRVSGSGVYACPPVSVGDCLVFVCGVGRRIK-YISGSTEQGFRFNEIT-----QL 475

Query: 270 IDHFGN 275
            DH  N
Sbjct: 476 ADHLFN 481


>gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 686

 Score = 24.3 bits (51), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 17/74 (22%)

Query: 12  TRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKEFLGS---- 67
           +R + L ++L+ Q+              T MDA  R +L +   +DL  LK+   S    
Sbjct: 615 SRFKGLGEMLASQL------------KETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662

Query: 68  -GEKWGVQFSYIEQ 80
            G K   +F +I++
Sbjct: 663 MGTKADERFKFIQE 676


>gi|254780872|ref|YP_003065285.1| 3-demethylubiquinone-9 3-methyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 254

 Score = 23.1 bits (48), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 248 VACPEEIAYRHDFINESQFFQLIDHFGNSPY 278
           V+C EEIA   +  +     ++I+H  N PY
Sbjct: 119 VSCAEEIAETDEKFDIILNMEVIEHVDNIPY 149


>gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score = 23.1 bits (48), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 44  AGIREILIISTPRDLPVLKE 63
           AG+ E L+I+ P D P+  +
Sbjct: 96  AGVMEFLLINHPLDCPICDQ 115


>gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 652

 Score = 23.1 bits (48), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 12/50 (24%), Positives = 20/50 (40%)

Query: 104 LILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQ 153
           ++LG+  FYG     I   A  R      +      P R+    V+S ++
Sbjct: 467 VLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSE 516


>gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal
           peptide protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 288

 Score = 23.1 bits (48), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 74  QFSYIEQLVPAGLAQSYILGAEF 96
           QF Y   LV  G+  S+ LGA F
Sbjct: 171 QFFYALDLVKKGVISSHALGATF 193


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.139    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,852
Number of Sequences: 1233
Number of extensions: 7922
Number of successful extensions: 27
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 14
length of query: 292
length of database: 328,796
effective HSP length: 73
effective length of query: 219
effective length of database: 238,787
effective search space: 52294353
effective search space used: 52294353
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)