BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter asiaticus str. psy62] (292 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 292 Score = 598 bits (1541), Expect = e-173, Method: Compositional matrix adjust. Identities = 292/292 (100%), Positives = 292/292 (100%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV Sbjct: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF Sbjct: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120 Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV Sbjct: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180 Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI Sbjct: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240 Query: 241 ENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKKKRI 292 ENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKKKRI Sbjct: 241 ENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKKKRI 292 >gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate uridylyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 299 Score = 51.6 bits (122), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/235 (20%), Positives = 101/235 (42%), Gaps = 40/235 (17%) Query: 2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVL 61 K + G G R P++ ++ K+ML I ++P+I Y + ++AG+ + + + T R ++ Sbjct: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFV-TGRGKGLI 67 Query: 62 KEFLG---------SGEKWGVQFSYIEQLVPA-------------GLAQSYILGAEFIGD 99 K++ + + + + +P+ GL + IGD Sbjct: 68 KDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGD 127 Query: 100 SSSVLILGDNVF-------YGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSS- 151 + L+L D + +++ ++ K A N V C Q +YG+V+V + Sbjct: 128 NPFALLLPDMIMSPLEGENCMANMIKLYEKEGA--NILAVSECDPQLSCKYGMVQVGKAI 185 Query: 152 -NQAISIEEKPNNPKSS-----FAVTGIYFYDQEVVNIARNIRPS-ARGELEITD 199 +Q I + P SS F + G Y ++ +I + + + +GE+++TD Sbjct: 186 DHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTD 240 >gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine pyrophosphorylase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 442 Score = 39.3 bits (90), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 44/199 (22%) Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62 IVLA G G R++ + SK + I KPMI + + T+ AGI + ++ Sbjct: 7 AIVLAAGRGHRMKSSS---SKVLQKIAGKPMISHVMETIAAAGIENVALV---------- 53 Query: 63 EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSD------- 115 LG G + + ++ P L+ Y + G + +VL D + G D Sbjct: 54 --LGYGAEEITRINF-----PPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYG 106 Query: 116 -----ISDIFHKAR---ARRNSATVVGCHVQNPQRYG--------VVEVDSSNQAISIEE 159 S KA A+ S VVG + NP+ YG ++ + N A E Sbjct: 107 DVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEER 166 Query: 160 KPNNPKSSF-AVTGIYFYD 177 K + S A+ G+Y D Sbjct: 167 KIHYCNSGLMAIDGLYIMD 185 >gi|254780805|ref|YP_003065218.1| chromosome partitioning protein B [Candidatus Liberibacter asiaticus str. psy62] Length = 300 Score = 29.6 bits (65), Expect = 0.058, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 25/168 (14%) Query: 116 ISDIFHKARARRNSATVVG---CHVQNPQRYGVVEVDSSNQAISIEE---KPNNPKSSFA 169 +S+ + K R R A ++G + +P++ + S ISI P+NP++ Sbjct: 1 MSNNYSKRRLGRGLAALIGEVNQSIDSPEKKTET-IPESQDCISIHSIVPNPHNPRN--- 56 Query: 170 VTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPES 229 YF + + ++ ++I+ + G ++ V + +D GL + G F A S Sbjct: 57 ----YFESEGLEDLCQSIK--SHGIIQPLIVRA--IDNGLYKIIA---GERRFRAAKMAS 105 Query: 230 LLDTAVFVRNIENRLGLYVACPEEIAYRHDF--INES-QFFQLIDHFG 274 L + V +RN++N+ L +A E + R D + E+ + QLI +G Sbjct: 106 LSEVPVIIRNVDNKSSLEIAIVENVQ-RKDLNPLEEALGYEQLISEYG 152 >gi|254780551|ref|YP_003064964.1| tolQ protein [Candidatus Liberibacter asiaticus str. psy62] Length = 230 Score = 26.2 bits (56), Expect = 0.74, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Query: 244 LGLYVACPEEIAYRHDFINESQFFQL-IDHFGNSPYGLYLRQ 284 LGL V+ P IAY + FI +S+ F + ++ F N + RQ Sbjct: 184 LGLCVSIPSSIAY-NKFIEDSKKFAMQMEGFANEFSAILSRQ 224 >gi|254781208|ref|YP_003065621.1| hypothetical protein CLIBASIA_05575 [Candidatus Liberibacter asiaticus str. psy62] Length = 578 Score = 25.8 bits (55), Expect = 0.81, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%) Query: 210 LAVEFLREGSAWFDAGTPESLLDTAVFVRNIENRLGLYVACPEEIAYRHDFINESQFFQL 269 L+++F R + A P S+ D VFV + R+ Y++ E +R + I QL Sbjct: 422 LSIDFRRVSGSGVYACPPVSVGDCLVFVCGVGRRIK-YISGSTEQGFRFNEIT-----QL 475 Query: 270 IDHFGN 275 DH N Sbjct: 476 ADHLFN 481 >gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 686 Score = 24.3 bits (51), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 17/74 (22%) Query: 12 TRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKEFLGS---- 67 +R + L ++L+ Q+ T MDA R +L + +DL LK+ S Sbjct: 615 SRFKGLGEMLASQL------------KETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662 Query: 68 -GEKWGVQFSYIEQ 80 G K +F +I++ Sbjct: 663 MGTKADERFKFIQE 676 >gi|254780872|ref|YP_003065285.1| 3-demethylubiquinone-9 3-methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 254 Score = 23.1 bits (48), Expect = 5.4, Method: Compositional matrix adjust. Identities = 11/31 (35%), Positives = 17/31 (54%) Query: 248 VACPEEIAYRHDFINESQFFQLIDHFGNSPY 278 V+C EEIA + + ++I+H N PY Sbjct: 119 VSCAEEIAETDEKFDIILNMEVIEHVDNIPY 149 >gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G [Candidatus Liberibacter asiaticus str. psy62] Length = 700 Score = 23.1 bits (48), Expect = 5.6, Method: Compositional matrix adjust. Identities = 8/20 (40%), Positives = 13/20 (65%) Query: 44 AGIREILIISTPRDLPVLKE 63 AG+ E L+I+ P D P+ + Sbjct: 96 AGVMEFLLINHPLDCPICDQ 115 >gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 23.1 bits (48), Expect = 6.0, Method: Compositional matrix adjust. Identities = 12/50 (24%), Positives = 20/50 (40%) Query: 104 LILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQ 153 ++LG+ FYG I A R + P R+ V+S ++ Sbjct: 467 VLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSE 516 >gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] Length = 288 Score = 23.1 bits (48), Expect = 6.3, Method: Compositional matrix adjust. Identities = 11/23 (47%), Positives = 13/23 (56%) Query: 74 QFSYIEQLVPAGLAQSYILGAEF 96 QF Y LV G+ S+ LGA F Sbjct: 171 QFFYALDLVKKGVISSHALGATF 193 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.139 0.404 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 187,852 Number of Sequences: 1233 Number of extensions: 7922 Number of successful extensions: 27 Number of sequences better than 100.0: 14 Number of HSP's better than 100.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 14 length of query: 292 length of database: 328,796 effective HSP length: 73 effective length of query: 219 effective length of database: 238,787 effective search space: 52294353 effective search space used: 52294353 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 38 (19.2 bits)