HHsearch alignment for GI: 254780923 and conserved domain: COG3754

>COG3754 RgpF Lipopolysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane].
Probab=100.00  E-value=0  Score=432.80  Aligned_cols=347  Identities=25%  Similarity=0.371  Sum_probs=289.4

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHEEEEEEEHHHH----HHHHHHHHHHHHCCCCCCCHHEEE-EEECCCCCHHHHHHHHHH
Q ss_conf             013689996106110024532110001101579----999999868775186864110122-210158401211113443
Q gi|254780923|r    6 CSKGYFLFTSHFKSWNFYSDHFNIEKVNLWGGF----FFWFWTLFYKRSKKLCYDENYVVA-YGSRSGKKFFAQSNLYMM   80 (365)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~   80 (365)
T Consensus       152 ~sk~F~~yW~~~p~i~t~~d~v~lhE~~~t~~F~~~Gy~~~s~~dt~k~~s-~~p~--~~~~d~~~~d~~pilkrr~~F~  228 (595)
T COG3754         152 QSKAFENYWFNIPKITTYQDSLLLHETSLTKIFADRGYTYASVLDTDKYES-VYPA--MPHPDRSVEDRFPILKRRPFFL  228 (595)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHCCCCCEEEECHHHCCC-CCCC--CCCCCHHHCCCCHHHCCCCCCC
T ss_conf             567999999734122115778874242110677754762115755221367-5765--5685133217760220465435


Q ss_pred             HCCCCCCCCHH--HHHHHHHH---CCCC-----------------------CCCCCCCCCCC-CCCEEEEEEECCHHHHH
Q ss_conf             02576676403--44888740---0158-----------------------77787543122-47559999943677799
Q gi|254780923|r   81 ERELHFDGQRI--HHFPQLLH---GWES-----------------------PAMGKVMQIAI-KAKIAIVVHLYYIDLWI  131 (365)
Q Consensus        81 ~~~~~~~~~~~--~~~~~~~~---~~~~-----------------------p~~~~~~~~~~-k~KIAV~lHlyY~DLl~  131 (365)
T Consensus       229 kp~~l~~~~~~~~~~al~~i~~~tdyd~~Li~~nl~rt~~p~t~~~~~~al~~~~~~~~~~~~~~kIav~lHv~ytdll~  308 (595)
T COG3754         229 KPLLLESGPEIILPRALREIKSTTDYDLSLIWDNLSRTSSPRTQLNGNAALASVLRLPRVAPVIQKIAVHLHVYYTDLLD  308 (595)
T ss_pred             CCHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHH
T ss_conf             72321357653148999998650476654899876541588866765310015777755465410268884146403589


Q ss_pred             HHHHHHHHCCCCCCEEEEECCCH-HHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHCHHHHCCCCEEEEECCCCCCCC
Q ss_conf             99999981899831899808631-799999985258-8379994566731789997506445268688999656867677
Q gi|254780923|r  132 EIANLLSNLSISFDLHVTLVTES-ASIKSEILKIFP-AARIHIMENHGRDVLPFLILLETEQLSNYDYVCKIHGKKSKRK  209 (365)
Q Consensus       132 Ei~~~L~~ip~~~DL~ITt~~~~-~~~~~~i~~~~~-~~~I~vv~NRGRDI~PfLv~~~~~~l~~YD~v~kiHTKKS~~~  209 (365)
T Consensus       309 e~l~laen~~~~ydl~~tt~~p~k~~~i~~~~arkp~~A~v~v~~nrGrd~~pll~~~~~~~~d~ydlI~~~htkksgq~  388 (595)
T COG3754         309 EFLALAENTPFPYDLILTTDTPDKVAEIQRALARKPKNAFVRVVENRGRDIGPLLHLLRDLKGDRYDLVCRLHTKKSGQA  388 (595)
T ss_pred             HHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCCC
T ss_conf             99999864798865177448815666999985448876368704787630031799987547875357645542167541


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC--
Q ss_conf             777334478999999875599999999999986289648981566544333323445410228999999998489987--
Q gi|254780923|r  210 GYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYRYPNKYCDYTCSLGKNREMICTLAGRMGITFQ--  287 (365)
Q Consensus       210 ~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~~~~~~~~~~~~wg~N~~~~~~L~~rlgi~~~--  287 (365)
T Consensus       389 --~~~~Ge~~r~~~~~~L~~~~~~v~n~~~~~~~~~~~~~~ip~~f~i~--~~~~~~aw~~~~a~~~dl~~~m~~~~~~d  464 (595)
T COG3754         389 --DFWAGELWRHHTIDNLLASRGYVTNALEIFADNPSVGADIPPFFRLN--YPTEGIAWFENRAAVADLLRLMGMNVKTD  464 (595)
T ss_pred             --CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEEE--CCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             --01334268999998762477203236564300554220148705880--35664179886789998998707766533


Q ss_pred             CCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHH
Q ss_conf             332663770147732988887871899712186555888873999999999999887398788726642166
Q gi|254780923|r  288 DQKLDFFAGTMFWVRTEALDPIKNLRLSRYFEPKVHKALDGEIEHAVERCFSLSVKKANFRISDVDCILGYR  359 (365)
Q Consensus       288 ~~~~~FpaGSMFW~Rp~AL~pL~dl~l~~~dFpeE~g~~DGTLaHAIERl~~~iv~~aGyri~~v~~~~g~~  359 (365)
T Consensus       465 ~~T~~~~ygtm~W~r~~aLr~lfe~~l~~~~f~~e~~~~d~~~ahaiEr~l~yva~~~g~~~~~~m~a~~~~  536 (595)
T COG3754         465 RNTFVAAYGTMFWFRPRALRPLFELELGWNDFPAEPLPQDGHLAHAIERLLAYVAWDAGYAFRHVMTAFAAE  536 (595)
T ss_pred             CCCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCC
T ss_conf             232145435554327888888887541364543246887738888999999999831002332156710047