HHsearch alignment for GI: 254780923 and conserved domain: COG3754
>COG3754 RgpF Lipopolysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=432.80 Aligned_cols=347 Identities=25% Similarity=0.371 Sum_probs=289.4
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHEEEEEEEHHHH----HHHHHHHHHHHHCCCCCCCHHEEE-EEECCCCCHHHHHHHHHH
Q ss_conf 013689996106110024532110001101579----999999868775186864110122-210158401211113443
Q gi|254780923|r 6 CSKGYFLFTSHFKSWNFYSDHFNIEKVNLWGGF----FFWFWTLFYKRSKKLCYDENYVVA-YGSRSGKKFFAQSNLYMM 80 (365)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~ 80 (365)
T Consensus 152 ~sk~F~~yW~~~p~i~t~~d~v~lhE~~~t~~F~~~Gy~~~s~~dt~k~~s-~~p~--~~~~d~~~~d~~pilkrr~~F~ 228 (595)
T COG3754 152 QSKAFENYWFNIPKITTYQDSLLLHETSLTKIFADRGYTYASVLDTDKYES-VYPA--MPHPDRSVEDRFPILKRRPFFL 228 (595)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHCCCCCEEEECHHHCCC-CCCC--CCCCCHHHCCCCHHHCCCCCCC
T ss_conf 567999999734122115778874242110677754762115755221367-5765--5685133217760220465435
Q ss_pred HCCCCCCCCHH--HHHHHHHH---CCCC-----------------------CCCCCCCCCCC-CCCEEEEEEECCHHHHH
Q ss_conf 02576676403--44888740---0158-----------------------77787543122-47559999943677799
Q gi|254780923|r 81 ERELHFDGQRI--HHFPQLLH---GWES-----------------------PAMGKVMQIAI-KAKIAIVVHLYYIDLWI 131 (365)
Q Consensus 81 ~~~~~~~~~~~--~~~~~~~~---~~~~-----------------------p~~~~~~~~~~-k~KIAV~lHlyY~DLl~ 131 (365)
T Consensus 229 kp~~l~~~~~~~~~~al~~i~~~tdyd~~Li~~nl~rt~~p~t~~~~~~al~~~~~~~~~~~~~~kIav~lHv~ytdll~ 308 (595)
T COG3754 229 KPLLLESGPEIILPRALREIKSTTDYDLSLIWDNLSRTSSPRTQLNGNAALASVLRLPRVAPVIQKIAVHLHVYYTDLLD 308 (595)
T ss_pred CCHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHH
T ss_conf 72321357653148999998650476654899876541588866765310015777755465410268884146403589
Q ss_pred HHHHHHHHCCCCCCEEEEECCCH-HHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHCHHHHCCCCEEEEECCCCCCCC
Q ss_conf 99999981899831899808631-799999985258-8379994566731789997506445268688999656867677
Q gi|254780923|r 132 EIANLLSNLSISFDLHVTLVTES-ASIKSEILKIFP-AARIHIMENHGRDVLPFLILLETEQLSNYDYVCKIHGKKSKRK 209 (365)
Q Consensus 132 Ei~~~L~~ip~~~DL~ITt~~~~-~~~~~~i~~~~~-~~~I~vv~NRGRDI~PfLv~~~~~~l~~YD~v~kiHTKKS~~~ 209 (365)
T Consensus 309 e~l~laen~~~~ydl~~tt~~p~k~~~i~~~~arkp~~A~v~v~~nrGrd~~pll~~~~~~~~d~ydlI~~~htkksgq~ 388 (595)
T COG3754 309 EFLALAENTPFPYDLILTTDTPDKVAEIQRALARKPKNAFVRVVENRGRDIGPLLHLLRDLKGDRYDLVCRLHTKKSGQA 388 (595)
T ss_pred HHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCCC
T ss_conf 99999864798865177448815666999985448876368704787630031799987547875357645542167541
Q ss_pred CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC--
Q ss_conf 777334478999999875599999999999986289648981566544333323445410228999999998489987--
Q gi|254780923|r 210 GYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYRYPNKYCDYTCSLGKNREMICTLAGRMGITFQ-- 287 (365)
Q Consensus 210 ~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~~~~~~~~~~~~wg~N~~~~~~L~~rlgi~~~-- 287 (365)
T Consensus 389 --~~~~Ge~~r~~~~~~L~~~~~~v~n~~~~~~~~~~~~~~ip~~f~i~--~~~~~~aw~~~~a~~~dl~~~m~~~~~~d 464 (595)
T COG3754 389 --DFWAGELWRHHTIDNLLASRGYVTNALEIFADNPSVGADIPPFFRLN--YPTEGIAWFENRAAVADLLRLMGMNVKTD 464 (595)
T ss_pred --CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEEE--CCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf --01334268999998762477203236564300554220148705880--35664179886789998998707766533
Q ss_pred CCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHH
Q ss_conf 332663770147732988887871899712186555888873999999999999887398788726642166
Q gi|254780923|r 288 DQKLDFFAGTMFWVRTEALDPIKNLRLSRYFEPKVHKALDGEIEHAVERCFSLSVKKANFRISDVDCILGYR 359 (365)
Q Consensus 288 ~~~~~FpaGSMFW~Rp~AL~pL~dl~l~~~dFpeE~g~~DGTLaHAIERl~~~iv~~aGyri~~v~~~~g~~ 359 (365)
T Consensus 465 ~~T~~~~ygtm~W~r~~aLr~lfe~~l~~~~f~~e~~~~d~~~ahaiEr~l~yva~~~g~~~~~~m~a~~~~ 536 (595)
T COG3754 465 RNTFVAAYGTMFWFRPRALRPLFELELGWNDFPAEPLPQDGHLAHAIERLLAYVAWDAGYAFRHVMTAFAAE 536 (595)
T ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCC
T ss_conf 232145435554327888888887541364543246887738888999999999831002332156710047