HHsearch alignment for GI: 254780923 and conserved domain: COG3754
>COG3754 RgpF Lipopolysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane].
Probab=96.57 E-value=9e-05 Score=48.87 Aligned_cols=121 Identities=15% Similarity=0.079 Sum_probs=84.3
Q ss_pred EECCCCCHHHHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 94566731789997506445268688999656867677777334478999999875599999999999986289648981
Q gi|254780923|r 172 IMENHGRDVLPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIG 251 (365)
Q Consensus 172 vv~NRGRDI~PfLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~ 251 (365)
T Consensus 475 m~W~r~~aLr~lfe~----~l-~~~~f~~e~~~~d~~~----ahaiEr~l~yva~~~g--~~~~~~m~a~~~~~~~~~l~ 543 (595)
T COG3754 475 MFWFRPRALRPLFEL----EL-GWNDFPAEPLPQDGHL----AHAIERLLAYVAWDAG--YAFRHVMTAFAAEPNYDMLE 543 (595)
T ss_pred HHHCCHHHHHHHHHH----HC-CHHHHHHCCCCCCHHH----HHHHHHHHHHHHHCCH--HHHHCCCCCCCCCCCCCHHH
T ss_conf 543278888888875----41-3645432468877388----8899999999983100--23321567100478830688
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 56654433332344541022899999999848998733266377014773298888787189971218655588887399
Q gi|254780923|r 252 SRAYRYPNKYCDYTCSLGKNREMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPIKNLRLSRYFEPKVHKALDGEIE 331 (365)
Q Consensus 252 P~~~~~~~~~~~~~~~wg~N~~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL~dl~l~~~dFpeE~g~~DGTLa 331 (365)
T Consensus 544 ~~---------------------~~~~--~~~~~~~~~~~~------~~~~~~vk~~l~~l~~~~~~~~~~~~~~l~~~~ 594 (595)
T COG3754 544 AK---------------------LQRL--RSGDPSADFNLR------FWGRTSVKRALRDLIDAIKKSGKERGPILFRKL 594 (595)
T ss_pred HH---------------------HHHH--HCCCCCCCCHHH------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 87---------------------7775--158996331233------044043677777877999875155506666522
Q ss_pred H
Q ss_conf 9
Q gi|254780923|r 332 H 332 (365)
Q Consensus 332 H 332 (365)
T Consensus 595 ~ 595 (595)
T COG3754 595 R 595 (595)
T ss_pred C
T ss_conf 9