HHsearch alignment for GI: 254780923 and conserved domain: TIGR03030
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=95.11 E-value=0.28 Score=27.88 Aligned_cols=269 Identities=12% Similarity=0.055 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHEEEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 15799999998687751868641101222101584012111134430257667640344888740015877787543122
Q gi|254780923|r 35 WGGFFFWFWTLFYKRSKKLCYDENYVVAYGSRSGKKFFAQSNLYMMERELHFDGQRIHHFPQLLHGWESPAMGKVMQIAI 114 (365)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 114 (365)
T Consensus 62 ~ls~~~~~RYl~WR~t~TL~~~~~----------~~~~~~~~L~~aE~y~~--~~~~l~~~~~~~p~~r~~~~~~~~~~~ 129 (713)
T TIGR03030 62 VLSVFISLRYLWWRLTETLPFDNT----------LNFIFGTLLLLAELYSI--TILLLGYFQTVRPLDRTPVPLPLDPEE 129 (713)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCH----------HHHHHHHHHHHHHHHHH--HHHHHHHHHEEECCCCCCCCCCCCHHH
T ss_conf 999999999999970053689973----------88999999999999999--999999987210046887889998101
Q ss_pred CCCEEEEEEECCHH--HHHHHHHHHHHCCCCCC---EEEEECCC--H---------------HHHHHHHHHHCCCCEEEE
Q ss_conf 47559999943677--79999999981899831---89980863--1---------------799999985258837999
Q gi|254780923|r 115 KAKIAIVVHLYYID--LWIEIANLLSNLSISFD---LHVTLVTE--S---------------ASIKSEILKIFPAARIHI 172 (365)
Q Consensus 115 k~KIAV~lHlyY~D--Ll~Ei~~~L~~ip~~~D---L~ITt~~~--~---------------~~~~~~i~~~~~~~~I~v 172 (365)
T Consensus 130 ~PtVDV~IPtYNEp~~vv~~Tl~aa~~ldYP~~kl~V~vLDDG~td~~~~~~~~~~~~~~~rR~e~~~la~~lGv~YitR 209 (713)
T TIGR03030 130 WPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYITR 209 (713)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEC
T ss_conf 89534896489999899999999998689998546699997989710023430123333441399999999809865537
Q ss_pred ECCCCCHHHHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 45667317899975064452686889996568676777773344789999998755999999999999862896489815
Q gi|254780923|r 173 MENHGRDVLPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGS 252 (365)
Q Consensus 173 v~NRGRDI~PfLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P 252 (365)
T Consensus 210 ~~n~hAKAGNLN~AL~--~t-~GelIaVfDAD----------------------~vP~~~FL~~tvg~F~~DpklalVQT 264 (713)
T TIGR03030 210 PRNVHAKAGNINNALK--HT-DGELILIFDAD----------------------HVPTRDFLQRTVGWFVEDPKLFLVQT 264 (713)
T ss_pred CCCCCCCCHHHHHHHH--HC-CCCEEEEECCC----------------------CCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9878876167899987--36-98789996788----------------------78668999999898702997699948
Q ss_pred CCCCCCCCCCCCCCCCHH--HHHHHHHHHHHCCCCCC-CCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf 665443333234454102--28999999998489987-332663770147732988887871899712186555888873
Q gi|254780923|r 253 RAYRYPNKYCDYTCSLGK--NREMICTLAGRMGITFQ-DQKLDFFAGTMFWVRTEALDPIKNLRLSRYFEPKVHKALDGE 329 (365)
Q Consensus 253 ~~~~~~~~~~~~~~~wg~--N~~~~~~L~~rlgi~~~-~~~~~FpaGSMFW~Rp~AL~pL~dl~l~~~dFpeE~g~~DGT 329 (365)
T Consensus 265 Pq~F~N~Dp--~~~NL~~~~~~p~e~~~Fy~~iq~g~d~wnaaf~cGS~aV~RR~AL~eIG-------Gf~~~tITED~- 334 (713)
T TIGR03030 265 PHFFVSPDP--IERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREALDEIG-------GIAGETVTEDA- 334 (713)
T ss_pred CEEEECCCH--HHHCCHHHCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCC-------CCCCCCEEHHH-
T ss_conf 975689887--87411120367504778899985564668807982617987499999807-------97776040108-
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEHHHHH
Q ss_conf 9999999999998873987887266421
Q gi|254780923|r 330 IEHAVERCFSLSVKKANFRISDVDCILG 357 (365)
Q Consensus 330 LaHAIERl~~~iv~~aGyri~~v~~~~g 357 (365)
T Consensus 335 -------~Tsl~Lh~~Gw~s~Yl~~~la 355 (713)
T TIGR03030 335 -------ETALKLHRRGWNSAYLDRPLI 355 (713)
T ss_pred -------HHHHHHHHCCCEEEEECCHHH
T ss_conf -------999999977983898574876