HHsearch alignment for GI: 254780923 and conserved domain: cd06434
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=95.39 E-value=0.23 Score=28.40 Aligned_cols=198 Identities=12% Similarity=0.104 Sum_probs=106.9
Q ss_pred CEEEEEEECCH--HHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHH--HHHCCCCEEEEECCCCCHHHHHHHHHCHHHH
Q ss_conf 55999994367--7799999999818998318998086317999999--8525883799945667317899975064452
Q gi|254780923|r 117 KIAIVVHLYYI--DLWIEIANLLSNLSISFDLHVTLVTESASIKSEI--LKIFPAARIHIMENHGRDVLPFLILLETEQL 192 (365)
Q Consensus 117 KIAV~lHlyY~--DLl~Ei~~~L~~ip~~~DL~ITt~~~~~~~~~~i--~~~~~~~~I~vv~NRGRDI~PfLv~~~~~~l 192 (365)
T Consensus 1 ~VsviIPayNE~~~il~~~l~s~~~~~-~~eiivV~D~s~d~~~~~~~~~~~~~~~~v~~~~~~GK~-~Aln~~l~---~ 75 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILRQK-PLEIIVVTDGDDEPYLSILSQTVKYGGIFVITVPHPGKR-RALAEGIR---H 75 (235)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCCHH-HHHHHHHH---H
T ss_conf 979999522697689999999998089-998999988999728999998634897899988989989-99999999---7
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHH--
Q ss_conf 686889996568676777773344789999998755999999999999862896489815665443333234454102--
Q gi|254780923|r 193 SNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYRYPNKYCDYTCSLGK-- 270 (365)
Q Consensus 193 ~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~~~~~~~~~~~~wg~-- 270 (365)
T Consensus 76 a~~d~v~~~Da---------------------D~~~-~~~~l~~l~~~f~-d~~vg~V~~~~~~~~~-----~~~~~~~~ 127 (235)
T cd06434 76 VTTDIVVLLDS---------------------DTVW-PPNALPEMLKPFE-DPKVGGVGTNQRILRP-----RDSKWSFL 127 (235)
T ss_pred CCCCEEEEECC---------------------CCCC-CHHHHHHHHHHHC-CCCEEEEEEEEEEECC-----CCCHHHHH
T ss_conf 57788999858---------------------8535-8889999999648-9987999703886469-----99899999
Q ss_pred -HHH--HHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHHHHHCC
Q ss_conf -289--99999998489987332663770147732988887871899712186555888873999999-99999988739
Q gi|254780923|r 271 -NRE--MICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPIKNLRLSRYFEPKVHKALDGEIEHAVE-RCFSLSVKKAN 346 (365)
Q Consensus 271 -N~~--~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL~dl~l~~~dFpeE~g~~DGTLaHAIE-Rl~~~iv~~aG 346 (365)
T Consensus 128 ~~~~~~~~~~~~~~~-~~-~~g~~~~~~G~~~~~Rr~~l~~~~~~~----~~~~~~~--~g~~~~~~ED~~lt~r~~~~G 199 (235)
T cd06434 128 AAEYLERRNEEIRAA-MS-YDGGVPCLSGRTAAYRTEILKDFLFLE----EFTNETF--MGRRLNAGDDRFLTRYVLSHG 199 (235)
T ss_pred HHHHHHHHHHHHHHH-HH-HCCCEEEECCHHHHHHHHHHHHHCCHH----CCCCCCC--CCCCCCCCHHHHHHHHHHHCC
T ss_conf 999999999999999-98-559868963707999999998533010----1230002--777776426999999999869
Q ss_pred CEEEEEHHH
Q ss_conf 878872664
Q gi|254780923|r 347 FRISDVDCI 355 (365)
Q Consensus 347 yri~~v~~~ 355 (365)
T Consensus 200 ~r~~y~~~a 208 (235)
T cd06434 200 YKTVYQYTS 208 (235)
T ss_pred CEEEEECCC
T ss_conf 989992477