HHsearch alignment for GI: 254780923 and conserved domain: pfam05045
>pfam05045 RgpF Rhamnan synthesis protein F. This family consists of a group of proteins which are related to the Streptococcus rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O polysaccharides of phytopathogenic bacteria and are regarded as pathogenic factors.
Probab=100.00 E-value=0 Score=627.17 Aligned_cols=334 Identities=25% Similarity=0.359 Sum_probs=291.9
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHEEEEEEEHHHH----HHHHHHHHHHHHCCCCCCCHHEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 013689996106110024532110001101579----9999998687751868641101222101584012111134430
Q gi|254780923|r 6 CSKGYFLFTSHFKSWNFYSDHFNIEKVNLWGGF----FFWFWTLFYKRSKKLCYDENYVVAYGSRSGKKFFAQSNLYMME 81 (365)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 81 (365)
T Consensus 120 ~s~~F~~yW~~~~~~~~~~~~I~~~E~~fT~~F~~~G~~~~~~~dt~~~~-~~~p~~~~~~~~~~~-~~~IlKrr~~F~k 197 (498)
T pfam05045 120 QSKAFRDYWENIPEINSYQDVIDHHETQFTKIFLDLGYSYEVVLDTDKYD-SSYPVFLHPDFTYYN-RTPILKRRVFFHD 197 (498)
T ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHCC-CCCCCCCCCHHHHHC-CCHHHHCCCCCCC
T ss_conf 68889999843887677999998889999999987697369995522215-668500372655307-3267643687544
Q ss_pred CCCCCC--CCHHHHHHHHHHC---------CCC--------------------CCCCCCC--C-CCCCCCEEEEEEECCH
Q ss_conf 257667--6403448887400---------158--------------------7778754--3-1224755999994367
Q gi|254780923|r 82 RELHFD--GQRIHHFPQLLHG---------WES--------------------PAMGKVM--Q-IAIKAKIAIVVHLYYI 127 (365)
Q Consensus 82 ~~~~~~--~~~~~~~~~~~~~---------~~~--------------------p~~~~~~--~-~~~k~KIAV~lHlyY~ 127 (365)
T Consensus 198 ~~~~-~~~~~~~~~l~~~l~~~t~Yp~~LI~~~~~r~~~p~~l~~n~~l~y~L~~~~~~~~~~~~~~~~kIav~~HvyY~ 276 (498)
T pfam05045 198 VKAL-DANQIILPRALEYIEENSDYDLSLIVKHVSRTSYPRDLNTNAALLSVLPDKYVKPDSAAVRDDQKIAVHAHVYYV 276 (498)
T ss_pred CHHH-HCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHCCCCCEECCCCCCCCCCCCCCCCCEEEEEEEEECH
T ss_conf 0454-302311589999998668998899999877531877775236744235620036443333557859999995347
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECC-CHHHHHHHHHHHCC---CCEEEEECCCCCHHHHHHHHHCHHHH-CCCCEEEEEC
Q ss_conf 7799999999818998318998086-31799999985258---83799945667317899975064452-6868899965
Q gi|254780923|r 128 DLWIEIANLLSNLSISFDLHVTLVT-ESASIKSEILKIFP---AARIHIMENHGRDVLPFLILLETEQL-SNYDYVCKIH 202 (365)
Q Consensus 128 DLl~Ei~~~L~~ip~~~DL~ITt~~-~~~~~~~~i~~~~~---~~~I~vv~NRGRDI~PfLv~~~~~~l-~~YD~v~kiH 202 (365)
T Consensus 277 DLl~e~l~y~~~ip~~~Dl~ITT~~~ek~~~i~~~l~~~~~~~~~~V~vv~NRGRDv~pfLv~~~~~l~~~~YD~v~hiH 356 (498)
T pfam05045 277 DMLDEILTAFKNIPFSYDLIITTDTDDKKAEIEEILAKRKGAKNAIVRVVQNRGRDMSPLLISLKDELVDDRYDLVCRFH 356 (498)
T ss_pred HHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 26999999998289874189985987789999999985667773289990577741788999988774536774899965
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 68676777773344789999998755999999999999862896489815665443333234454102289999999984
Q gi|254780923|r 203 GKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYRYPNKYCDYTCSLGKNREMICTLAGRM 282 (365)
Q Consensus 203 TKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~~~~~~~~~~~~wg~N~~~~~~L~~rl 282 (365)
T Consensus 357 tKKS~~~~~--~~G~~wr~~l~~nLlgs~~~v~~Il~~F~~~p~lGlv~p~~~~~~--~~~~~~~W~~N~~~~~~L~~~l 432 (498)
T pfam05045 357 TKKSPQADF--WAGESFKEELIDNLLKPRGYADNILAMFEQNPSIGLVIPDIVHIR--YPTIGNAWNENAPEMNKLARRM 432 (498)
T ss_pred CCCCCCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCHHHCC--CCCCCCCCCCCHHHHHHHHHHC
T ss_conf 574766686--405799999999721988999999998710986368738723125--7543567645679999999984
Q ss_pred CCCCC--CCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 89987--332663770147732988887871899712186555888873999999999999887398
Q gi|254780923|r 283 GITFQ--DQKLDFFAGTMFWVRTEALDPIKNLRLSRYFEPKVHKALDGEIEHAVERCFSLSVKKANF 347 (365)
Q Consensus 283 gi~~~--~~~~~FpaGSMFW~Rp~AL~pL~dl~l~~~dFpeE~g~~DGTLaHAIERl~~~iv~~aGy 347 (365)
T Consensus 433 gl~~~~d~~~~~~p~GTMFW~Rp~AL~~L~~l~l~~~DFpeEp~~-DGTLaHAIERli~yia~~~GY 498 (498)
T pfam05045 433 GIKKKFDDNTPVASYGTMFWFRPEALKKLFELEWKWEDFPNEPLP-DNSLLHAIERLLAYAAWDAGY 498 (498)
T ss_pred CCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCC
T ss_conf 999877756666676549997189989998379980006646897-428999999999999987539