HHsearch alignment of GI: 254780923 and MMDB domain: 3ckj_A_
>3ckj_A (A:) Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=94.33 E-value=0.18 Score=28.60 Aligned_cols=178 Identities=13% Similarity=-0.000 Sum_probs=93.2
Q ss_pred CCCCCCCCCCCCEEEEEEECC-HHHHHHHHHHHHHCC--CCCCEEEEECC--C-HHHHHHHHHHHCCCCEEEE---ECCC
Q ss_conf 787543122475599999436-777999999998189--98318998086--3-1799999985258837999---4566
Q gi|254780923|r 106 MGKVMQIAIKAKIAIVVHLYY-IDLWIEIANLLSNLS--ISFDLHVTLVT--E-SASIKSEILKIFPAARIHI---MENH 176 (365)
Q Consensus 106 ~~~~~~~~~k~KIAV~lHlyY-~DLl~Ei~~~L~~ip--~~~DL~ITt~~--~-~~~~~~~i~~~~~~~~I~v---v~NR 176 (365)
.++.+.....++|+|++=.|= .+.+.++++.+.+-. .++.++|.-+. + ..++.++.....+...+.+ -.|.
T Consensus 38 ~~~~~~~~~~p~vsIiIp~yN~~~~l~~~l~sl~~q~~~~~~eiivvDd~S~D~t~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (329)
T 3ckj_A 38 VAELEAAKAGRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALPEVPIRP 117 (329)
T ss_dssp HHHHHHTTTTCCEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCTTSCCCC
T ss_pred HHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCC
T ss_conf 45565333799799998268788899999999985157999689999896963489999872322235541577244300
Q ss_pred CCHHHHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 73178999750644526868899965686767777733447899999987559999999999998628964898156654
Q gi|254780923|r 177 GRDVLPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYR 256 (365)
Q Consensus 177 GRDI~PfLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~ 256 (365)
|.- +..-.++ ...+.|+|+.+.+=- .+-+++.++.++..++.+|..+++++....
T Consensus 118 g~~-~a~n~~~---~~a~~~~i~~~D~Dd---------------------~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~ 172 (329)
T 3ckj_A 118 GKG-EALWRSL---AASRGDIVVFVDSDL---------------------INPHPMFVPWLVGPLLTGDGVHLVKSFYRR 172 (329)
T ss_dssp SHH-HHHHHHH---HHCCCSEEEECCTTE---------------------ESCCTTHHHHHHHHHHSCSSCCEEEEEEEC
T ss_pred HHH-HHHHHHH---HHCCCCCEEEECCCC---------------------CCCCHHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 499-9999999---964746069973788---------------------889999999999999739865422013300
Q ss_pred CCCCCCCC--CCCCHHHH--HHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHH
Q ss_conf 43333234--45410228--9999999984899873326637701477329888878
Q gi|254780923|r 257 YPNKYCDY--TCSLGKNR--EMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPI 309 (365)
Q Consensus 257 ~~~~~~~~--~~~wg~N~--~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL 309 (365)
........ ...+..+. ........... .........+.|+.+-.|.+++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~ 228 (329)
T 3ckj_A 173 PLNVGDAGGGAGATGGGRVTELVARPLLAAL-RPELGCILQPLGGEYAATRELLTSV 228 (329)
T ss_dssp C---------------CHHHHHTHHHHHHHH-CGGGGGCSCTTCSCEEEEHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHCCCEEECCCCCEEEEHHHHHHC
T ss_conf 2555544554332222188999999999986-4220330015764478749999768