HHsearch alignment of GI: 254780923 and MMDB domain: 3ckj_A_

>3ckj_A (A:) Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=94.33  E-value=0.18  Score=28.60  Aligned_cols=178  Identities=13%  Similarity=-0.000  Sum_probs=93.2

Q ss_pred             CCCCCCCCCCCCEEEEEEECC-HHHHHHHHHHHHHCC--CCCCEEEEECC--C-HHHHHHHHHHHCCCCEEEE---ECCC
Q ss_conf             787543122475599999436-777999999998189--98318998086--3-1799999985258837999---4566
Q gi|254780923|r  106 MGKVMQIAIKAKIAIVVHLYY-IDLWIEIANLLSNLS--ISFDLHVTLVT--E-SASIKSEILKIFPAARIHI---MENH  176 (365)
Q Consensus       106 ~~~~~~~~~k~KIAV~lHlyY-~DLl~Ei~~~L~~ip--~~~DL~ITt~~--~-~~~~~~~i~~~~~~~~I~v---v~NR  176 (365)
                      .++.+.....++|+|++=.|= .+.+.++++.+.+-.  .++.++|.-+.  + ..++.++.....+...+.+   -.|.
T Consensus        38 ~~~~~~~~~~p~vsIiIp~yN~~~~l~~~l~sl~~q~~~~~~eiivvDd~S~D~t~~~~~~~~~~~~~~~~~~~~~~~~~  117 (329)
T 3ckj_A           38 VAELEAAKAGRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALPEVPIRP  117 (329)
T ss_dssp             HHHHHHTTTTCCEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCTTSCCCC
T ss_pred             HHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCC
T ss_conf             45565333799799998268788899999999985157999689999896963489999872322235541577244300


Q ss_pred             CCHHHHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf             73178999750644526868899965686767777733447899999987559999999999998628964898156654
Q gi|254780923|r  177 GRDVLPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYR  256 (365)
Q Consensus       177 GRDI~PfLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~  256 (365)
                      |.- +..-.++   ...+.|+|+.+.+=-                     .+-+++.++.++..++.+|..+++++....
T Consensus       118 g~~-~a~n~~~---~~a~~~~i~~~D~Dd---------------------~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~  172 (329)
T 3ckj_A          118 GKG-EALWRSL---AASRGDIVVFVDSDL---------------------INPHPMFVPWLVGPLLTGDGVHLVKSFYRR  172 (329)
T ss_dssp             SHH-HHHHHHH---HHCCCSEEEECCTTE---------------------ESCCTTHHHHHHHHHHSCSSCCEEEEEEEC
T ss_pred             HHH-HHHHHHH---HHCCCCCEEEECCCC---------------------CCCCHHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf             499-9999999---964746069973788---------------------889999999999999739865422013300


Q ss_pred             CCCCCCCC--CCCCHHHH--HHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHH
Q ss_conf             43333234--45410228--9999999984899873326637701477329888878
Q gi|254780923|r  257 YPNKYCDY--TCSLGKNR--EMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPI  309 (365)
Q Consensus       257 ~~~~~~~~--~~~wg~N~--~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL  309 (365)
                      ........  ...+..+.  ........... .........+.|+.+-.|.+++..+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~  228 (329)
T 3ckj_A          173 PLNVGDAGGGAGATGGGRVTELVARPLLAAL-RPELGCILQPLGGEYAATRELLTSV  228 (329)
T ss_dssp             C---------------CHHHHHTHHHHHHHH-CGGGGGCSCTTCSCEEEEHHHHTTS
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHCCCEEECCCCCEEEEHHHHHHC
T ss_conf             2555544554332222188999999999986-4220330015764478749999768