Query gi|254780923|ref|YP_003065336.1| hypothetical protein CLIBASIA_04110 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 365 No_of_seqs 111 out of 158 Neff 5.0 Searched_HMMs 33803 Date Wed Jun 1 19:26:40 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780923.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3ckj_A Putative uncharacteriz 94.3 0.18 5.3E-06 28.6 6.8 178 106-309 38-228 (329) 2 >1omz_A Alpha-1,4-N-acetylhexo 92.9 0.53 1.6E-05 25.8 7.2 123 107-255 19-145 (293) 3 >2z86_A Chondroitin synthase; 87.0 2.1 6.3E-05 22.2 12.4 120 111-255 30-155 (295) 4 >1qg8_A Protein (spore coat po 83.4 3.2 9.4E-05 21.1 6.5 162 116-312 1-174 (255) 5 >3f1y_A Mannosyl-3-phosphoglyc 83.3 3.2 9.4E-05 21.1 8.6 178 106-309 84-273 (387) 6 >2ffu_A Ppgalnact-2, polypepti 72.0 6.9 0.0002 19.1 11.9 179 107-311 57-253 (370) 7 >2d7i_A Polypeptide N-acetylga 65.1 9.7 0.00029 18.2 10.6 128 101-254 41-178 (360) 8 >1pjc_A Protein (L-alanine deh 49.3 18 0.00053 16.6 4.0 47 288-336 79-131 (169) 9 >1fo8_A Alpha-1,3-mannosyl-gly 49.2 18 0.00053 16.6 10.2 187 116-356 2-208 (230) 10 >3cnf_A VP1; cytoplasmic polyh 37.9 18 0.00052 16.6 1.8 34 306-339 40-73 (103) 11 >3h14_A Aminotransferase, clas 36.9 19 0.00057 16.4 1.8 105 215-342 41-145 (156) 12 >3brq_A HTH-type transcription 35.0 30 0.00089 15.2 6.0 74 106-181 10-92 (144) 13 >1yt5_A Inorganic polyphosphat 28.6 39 0.0011 14.6 6.3 59 117-178 2-74 (78) 14 >2dri_A D-ribose-binding prote 27.9 40 0.0012 14.5 6.0 82 115-201 1-89 (139) 15 >2d1c_A Isocitrate dehydrogena 26.3 43 0.0013 14.3 3.3 80 142-244 20-101 (126) 16 >1vkr_A Mannitol-specific PTS 24.0 47 0.0014 14.1 4.3 33 138-174 54-86 (125) 17 >1s1m_A CTP synthase; CTP synt 20.6 55 0.0016 13.6 3.2 52 156-208 122-179 (269) 18 >2czr_A TBP-interacting protei 20.5 55 0.0016 13.6 3.2 16 162-177 53-68 (82) No 1 >>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A (A:) Probab=94.33 E-value=0.18 Score=28.60 Aligned_cols=178 Identities=13% Similarity=-0.000 Sum_probs=93.2 Q ss_pred CCCCCCCCCCCCEEEEEEECC-HHHHHHHHHHHHHCC--CCCCEEEEECC--C-HHHHHHHHHHHCCCCEEEE---ECCC Q ss_conf 787543122475599999436-777999999998189--98318998086--3-1799999985258837999---4566 Q gi|254780923|r 106 MGKVMQIAIKAKIAIVVHLYY-IDLWIEIANLLSNLS--ISFDLHVTLVT--E-SASIKSEILKIFPAARIHI---MENH 176 (365) Q Consensus 106 ~~~~~~~~~k~KIAV~lHlyY-~DLl~Ei~~~L~~ip--~~~DL~ITt~~--~-~~~~~~~i~~~~~~~~I~v---v~NR 176 (365) .++.+.....++|+|++=.|= .+.+.++++.+.+-. .++.++|.-+. + ..++.++.....+...+.+ -.|. T Consensus 38 ~~~~~~~~~~p~vsIiIp~yN~~~~l~~~l~sl~~q~~~~~~eiivvDd~S~D~t~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (329) T 3ckj_A 38 VAELEAAKAGRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALPEVPIRP 117 (329) T ss_dssp HHHHHHTTTTCCEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCTTSCCCC T ss_pred HHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCC T ss_conf 45565333799799998268788899999999985157999689999896963489999872322235541577244300 Q ss_pred CCHHHHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCC Q ss_conf 73178999750644526868899965686767777733447899999987559999999999998628964898156654 Q gi|254780923|r 177 GRDVLPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYR 256 (365) Q Consensus 177 GRDI~PfLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~ 256 (365) |.- +..-.++ ...+.|+|+.+.+=- .+-+++.++.++..++.+|..+++++.... T Consensus 118 g~~-~a~n~~~---~~a~~~~i~~~D~Dd---------------------~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~ 172 (329) T 3ckj_A 118 GKG-EALWRSL---AASRGDIVVFVDSDL---------------------INPHPMFVPWLVGPLLTGDGVHLVKSFYRR 172 (329) T ss_dssp SHH-HHHHHHH---HHCCCSEEEECCTTE---------------------ESCCTTHHHHHHHHHHSCSSCCEEEEEEEC T ss_pred HHH-HHHHHHH---HHCCCCCEEEECCCC---------------------CCCCHHHHHHHHHHHHCCCCCCCEEEEEEE T ss_conf 499-9999999---964746069973788---------------------889999999999999739865422013300 Q ss_pred CCCCCCCC--CCCCHHHH--HHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHH Q ss_conf 43333234--45410228--9999999984899873326637701477329888878 Q gi|254780923|r 257 YPNKYCDY--TCSLGKNR--EMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPI 309 (365) Q Consensus 257 ~~~~~~~~--~~~wg~N~--~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL 309 (365) ........ ...+..+. ........... .........+.|+.+-.|.+++..+ T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~ 228 (329) T 3ckj_A 173 PLNVGDAGGGAGATGGGRVTELVARPLLAAL-RPELGCILQPLGGEYAATRELLTSV 228 (329) T ss_dssp C---------------CHHHHHTHHHHHHHH-CGGGGGCSCTTCSCEEEEHHHHTTS T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHCCCEEECCCCCEEEEHHHHHHC T ss_conf 2555544554332222188999999999986-4220330015764478749999768 No 2 >>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} (A:) Probab=92.93 E-value=0.53 Score=25.76 Aligned_cols=123 Identities=11% Similarity=0.009 Sum_probs=80.9 Q ss_pred CCCCCCCCCCCEEEEEEECC-HHHHHHHHHHHHHCCCCCCEEEEECCCH---HHHHHHHHHHCCCCEEEEECCCCCHHHH Q ss_conf 87543122475599999436-7779999999981899831899808631---7999999852588379994566731789 Q gi|254780923|r 107 GKVMQIAIKAKIAIVVHLYY-IDLWIEIANLLSNLSISFDLHVTLVTES---ASIKSEILKIFPAARIHIMENHGRDVLP 182 (365) Q Consensus 107 ~~~~~~~~k~KIAV~lHlyY-~DLl~Ei~~~L~~ip~~~DL~ITt~~~~---~~~~~~i~~~~~~~~I~vv~NRGRDI~P 182 (365) .+......+++|+|++=.|= .+.++++++.+.+-..+.+.+|-.+... .+...+.....+...+..-+|.|--.+- T Consensus 19 ~~~~~~~~~p~isViIp~yN~~~~l~~~l~sl~~q~~~~~~iiv~d~ss~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 98 (293) T 1omz_A 19 IKSPSKSALDSFTLIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRNR 98 (293) T ss_dssp -------CTTCEEEEEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGGG T ss_pred CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHH T ss_conf 66867688898799996689879999999999819999809999899999878999997478987799962788847763 Q ss_pred HHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 9975064452686889996568676777773344789999998755999999999999862896489815665 Q gi|254780923|r 183 FLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAY 255 (365) Q Consensus 183 fLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~ 255 (365) -.+ ....+.|+|+.+.+-= .+ +++.++.+++.++++|..+++++... T Consensus 99 -n~~---~~~a~~~~i~~lD~D~---------------------~~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 145 (293) T 1omz_A 99 -LQV---FPEVETNAVLMVDDDT---------------------LI-SAQDLVFAFSIWQQFPDQIIGFVPRK 145 (293) T ss_dssp -GSC---CTTCCSSEEEEECTTE---------------------EE-CHHHHHHHHHHHTTSTTSEEESCEEE T ss_pred -CHH---HHHCCCCEEEEECCCC---------------------CC-CHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf -440---7656847799986864---------------------21-37899999999997887679643210 No 3 >>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* (A:59-353) Probab=87.04 E-value=2.1 Score=22.15 Aligned_cols=120 Identities=17% Similarity=0.201 Sum_probs=79.7 Q ss_pred CCCCCCCEEEEEEEC-CHHHHHHHHHHHHHCC--CCCCEEEEEC--CC-HHHHHHHHHHHCCCCEEEEECCCCCHHHHHH Q ss_conf 312247559999943-6777999999998189--9831899808--63-1799999985258837999456673178999 Q gi|254780923|r 111 QIAIKAKIAIVVHLY-YIDLWIEIANLLSNLS--ISFDLHVTLV--TE-SASIKSEILKIFPAARIHIMENHGRDVLPFL 184 (365) Q Consensus 111 ~~~~k~KIAV~lHly-Y~DLl~Ei~~~L~~ip--~~~DL~ITt~--~~-~~~~~~~i~~~~~~~~I~vv~NRGRDI~PfL 184 (365) +....++|+|++=.| -++.+.++++.+.+-. ..+.++|.-+ ++ ..++.++.....+.+.+...++.+.=-...- T Consensus 30 ~~~~~p~isViIp~yN~~~~l~~~l~sl~~q~~~~~~eiivvDd~S~D~t~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 109 (295) T 2z86_A 30 KQLIIDGLSIVIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYVRQKDYGYQLCAVRN 109 (295) T ss_dssp --CCCCCEEEEEEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEEEEECCCSCCHHHHHH T ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH T ss_conf 66868998999963799899999999997169999859999989898218999997513699699996899857899999 Q ss_pred HHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 75064452686889996568676777773344789999998755999999999999862896489815665 Q gi|254780923|r 185 ILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAY 255 (365) Q Consensus 185 v~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~ 255 (365) .+.. ..+.|+|+.+.+=-- + .++.+..++..+..+|..+++++... T Consensus 110 ~~~~---~a~~d~i~~lD~D~~---------------------~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 155 (295) T 2z86_A 110 LGLR---AAKYNYVAILDCDMA---------------------P-NPLWVQSYMELLAVDDNVALIGPRKY 155 (295) T ss_dssp HHHH---HCCSSEEEEECTTEE---------------------E-CTTHHHHHHHHHHHCTTEEEECCEEE T ss_pred HHHH---HCCCCEEEEECCCCC---------------------C-CHHHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 9999---759998999889724---------------------4-81399999999984998599987774 No 4 >>1qg8_A Protein (spore coat polysaccharide biosynthesis protein SPSA); glycosyltransferase; 1.50A {Bacillus subtilis} (A:) Probab=83.36 E-value=3.2 Score=21.10 Aligned_cols=162 Identities=14% Similarity=0.153 Sum_probs=84.7 Q ss_pred CCEEEEEEEC-CHHHHHHHHHHHHHCC-CCCCEEEEECCCHHHHHHHHHH---HCCCCE-----EEEE-CCCCCHHH-HH Q ss_conf 7559999943-6777999999998189-9831899808631799999985---258837-----9994-56673178-99 Q gi|254780923|r 116 AKIAIVVHLY-YIDLWIEIANLLSNLS-ISFDLHVTLVTESASIKSEILK---IFPAAR-----IHIM-ENHGRDVL-PF 183 (365) Q Consensus 116 ~KIAV~lHly-Y~DLl~Ei~~~L~~ip-~~~DL~ITt~~~~~~~~~~i~~---~~~~~~-----I~vv-~NRGRDI~-Pf 183 (365) |+|+|++=.| -++.+.++++.+.+.. .++.++|..+.........+.+ ..+... +.++ .+++.-.+ .. T Consensus 1 P~isViip~yn~~~~l~~~l~sl~~q~~~~~eiiivdd~S~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 80 (255) T 1qg8_A 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALI 80 (255) T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHH T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 97999995389889999999999828899859999989797308999999743012221111234321121345599999 Q ss_pred HHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC Q ss_conf 97506445268688999656867677777334478999999875599999999999986289648981566544333323 Q gi|254780923|r 184 LILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYRYPNKYCD 263 (365) Q Consensus 184 Lv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~~~~~~~~ 263 (365) -.++ ...+.|+|+.+++== .+ +++.+..++..++++|..+++++........ T Consensus 81 ~~~~---~~a~~d~i~~lD~D~---------------------~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--- 132 (255) T 1qg8_A 81 NQAI---EMAEGEYITYATDDN---------------------IY-MPDRLLKMVRELDTHPEKAVIYSASKTYHLN--- 132 (255) T ss_dssp HHHH---HHCCCSEEEEEETTE---------------------EE-CTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC--- T ss_pred HHHH---HHCCCCEEEEECCCC---------------------CC-CCCHHHHHHHHHHHCCCEEEEEEEEEEEEEC--- T ss_conf 9987---616876689960674---------------------31-0238999999998689815999433999967--- Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCC Q ss_conf 4454102289999999984899873326637701477329888878718 Q gi|254780923|r 264 YTCSLGKNREMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPIKNL 312 (365) Q Consensus 264 ~~~~wg~N~~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL~dl 312 (365) .+....... .............+..|+..-++..+++...-. T Consensus 133 ------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (255) T 1qg8_A 133 ------ENRDIVKET-VRPAAQVTWNAPCAIDHCSVMHRYSVLEKVKEK 174 (255) T ss_dssp ---------CEEEEE-EECCCSCBSCCTTTSCGGGEEEETHHHHHHHHH T ss_pred ------CCCCEECCC-CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH T ss_conf ------986352444-474045566403667666147799999998776 No 5 >>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, GDP- mannose; 2.20A {Rubrobacter xylanophilus} (A:) Probab=83.33 E-value=3.2 Score=21.09 Aligned_cols=178 Identities=11% Similarity=-0.020 Sum_probs=92.1 Q ss_pred CCCCCCCCCCCCEEEEEEECC-HHHHHHHHHHHHH----CCCCCCEEEEEC--CC-HHHHHHHHHHHCCCCEEEE---EC Q ss_conf 787543122475599999436-7779999999981----899831899808--63-1799999985258837999---45 Q gi|254780923|r 106 MGKVMQIAIKAKIAIVVHLYY-IDLWIEIANLLSN----LSISFDLHVTLV--TE-SASIKSEILKIFPAARIHI---ME 174 (365) Q Consensus 106 ~~~~~~~~~k~KIAV~lHlyY-~DLl~Ei~~~L~~----ip~~~DL~ITt~--~~-~~~~~~~i~~~~~~~~I~v---v~ 174 (365) .+...+...+++|.|++=.|= .+.+.++++.+.+ -..++.++|.-+ ++ ..++..+.....+...+.+ -+ T Consensus 84 ~~~~~~~~~~~~iSViIp~yN~~~~l~~~l~sl~~~~~q~~~~~EIIVVDdgStD~t~~i~~~~~~~~~~~~~~~~~~~~ 163 (387) T 3f1y_A 84 DLARRKRELGLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAASHGAEVYSENELMSGYGD 163 (387) T ss_dssp HHHHHHHHHTCCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCSSSHHHHHHHTTCEEEEGGGTTGGGCS T ss_pred HHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCC T ss_conf 99974124899899996768787799999999999863679982899998959716799999861522566536763124 Q ss_pred CCCCHHHHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCC Q ss_conf 66731789997506445268688999656867677777334478999999875599999999999986289648981566 Q gi|254780923|r 175 NHGRDVLPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRA 254 (365) Q Consensus 175 NRGRDI~PfLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~ 254 (365) |.|.-- ++-.++. ..+.|+|+.+.+=-. +-+++.++.++..+.++|+++++.+.. T Consensus 164 ~~g~~~-a~n~g~~---~a~gd~i~~lD~D~~---------------------~~~~~~l~~l~~~~~~~~~~~~v~~~~ 218 (387) T 3f1y_A 164 AHGKGD-AMWRALS---VTRGDLVLYIDADTR---------------------DFRPQLAYGVLGPVLEVPGVRFVKAAY 218 (387) T ss_dssp CCSHHH-HHHHHTT---TCCSSEEEECCTTCS---------------------SCCTHHHHTTHHHHHHSTTCCEEEEEE T ss_pred CCCCHH-HHHHHHH---HHCCCCCEEECCCCC---------------------CCCHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 688237-7500355---412331214437677---------------------799999999999998489730563211 Q ss_pred CCCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHH Q ss_conf 54433332344-54102289999999984899873326637701477329888878 Q gi|254780923|r 255 YRYPNKYCDYT-CSLGKNREMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPI 309 (365) Q Consensus 255 ~~~~~~~~~~~-~~wg~N~~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL 309 (365) ......-.... ..+............+..... ........|.++-.|.+++..+ T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 273 (387) T 3f1y_A 219 RRPFRKGESIEEDGGGRVTELTAKPLFNLFYPE-LAGFVQPLAGEFVADRELFCSI 273 (387) T ss_dssp ECC-------CCBCCSHHHHHTHHHHHHHHCGG-GTTCSCTTCSCEEEEHHHHTTS T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CCCEECCCCCCEEEEHHHHHCC T ss_conf 013477763223320345555543565410234-4530036655367877663256 No 6 >>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* (A:1-370) Probab=72.03 E-value=6.9 Score=19.06 Aligned_cols=179 Identities=7% Similarity=-0.044 Sum_probs=97.7 Q ss_pred CCCCCCCCCCCEEEEEEECC-HH-HHHHHHHHHHHCCCC---CCEEEEECCCHHHHHHHHHHHCCCCEEEE-ECCCCCHH Q ss_conf 87543122475599999436-77-799999999818998---31899808631799999985258837999-45667317 Q gi|254780923|r 107 GKVMQIAIKAKIAIVVHLYY-ID-LWIEIANLLSNLSIS---FDLHVTLVTESASIKSEILKIFPAARIHI-MENHGRDV 180 (365) Q Consensus 107 ~~~~~~~~k~KIAV~lHlyY-~D-Ll~Ei~~~L~~ip~~---~DL~ITt~~~~~~~~~~i~~~~~~~~I~v-v~NRGRDI 180 (365) .......-.++|.|++=.|= .+ ++.++++.+.+-..+ +.++|.-+.........+.+..++..+.. -+|+|.- T Consensus 57 ~~~~~~~~~p~iSIIIp~yN~~e~~l~~~l~Si~~Q~~~~~~~EIIvVDDgStD~t~~~~~~~~~~~~~i~~~~n~G~~- 135 (370) T 2ffu_A 57 QRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLM- 135 (370) T ss_dssp GGCCCCSSCCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBTTEEEEECSSCCHHH- T ss_pred CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCHH- T ss_conf 1366799999727999767581799999999999649352088799997899756799999628880599788986748- Q ss_pred HHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCC Q ss_conf 89997506445268688999656867677777334478999999875599999999999986289648981566544333 Q gi|254780923|r 181 LPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYRYPNK 260 (365) Q Consensus 181 ~PfLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~~~~~ 260 (365) +++-.+++ ..+.|+|+.+.+= ..+ .++.+..++..++++|..++++......... T Consensus 136 ~a~N~gi~---~a~ge~i~flD~D---------------------d~~-~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 190 (370) T 2ffu_A 136 RSRVRGAD---AAQAKVLTFLDSH---------------------CEC-NEHWLEPLLERVAEDRTRVVSPIIDVINMDN 190 (370) T ss_dssp HHHHHHHH---HCCSSEEEECCSS---------------------EEE-CTTCHHHHHHHHHHCTTEEEEEEEEEECTTT T ss_pred HHHHHHHH---HCCCCEEEEECCC---------------------CCC-CCHHHHHHHHHHHHCCCCCCCCEEEECCCCC T ss_conf 99999888---6689889995353---------------------030-5018999999986267630122354207987 Q ss_pred CCC------------CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHC Q ss_conf 323------------445410228999999998489987332663770147732988887871 Q gi|254780923|r 261 YCD------------YTCSLGKNREMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPIKN 311 (365) Q Consensus 261 ~~~------------~~~~wg~N~~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL~d 311 (365) ... .............................+..|....+|.+++..+-- T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (370) T 2ffu_A 191 FQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGK 253 (370) T ss_dssp CCEECBCSSEEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHHHHHTTC T ss_pred CEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCC T ss_conf 033045544355422243333243443554301234456543553121689999999998399 No 7 >>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* (A:57-416) Probab=65.06 E-value=9.7 Score=18.18 Aligned_cols=128 Identities=9% Similarity=0.049 Sum_probs=81.8 Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECC--HHHHHHHHHHHHHCCCC---CCEEEEEC--CC-HHH-HHHHHHHHCCCCEEE Q ss_conf 15877787543122475599999436--77799999999818998---31899808--63-179-999998525883799 Q gi|254780923|r 101 WESPAMGKVMQIAIKAKIAIVVHLYY--IDLWIEIANLLSNLSIS---FDLHVTLV--TE-SAS-IKSEILKIFPAARIH 171 (365) Q Consensus 101 ~~~p~~~~~~~~~~k~KIAV~lHlyY--~DLl~Ei~~~L~~ip~~---~DL~ITt~--~~-~~~-~~~~i~~~~~~~~I~ 171 (365) ...+...........++|.|++=.|= .+.+.++++.+.+-..+ +.++|--+ ++ ..+ +........+...+. T Consensus 41 ~~~~~~~~~~~~~~~p~vSIIIP~yN~~e~~l~~~l~Si~~Qt~~~~~~eIIivDd~s~d~t~~~i~~~~~~~~~~~~~i 120 (360) T 2d7i_A 41 IRHPNCNSKRYLETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRIL 120 (360) T ss_dssp CSCGGGGTCCEESSCCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEE T ss_pred CCCHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEE T ss_conf 88954500667778996799998576838999999999995588668858999989999726789999999648988999 Q ss_pred EE-CCCCCHHHHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 94-56673178999750644526868899965686767777733447899999987559999999999998628964898 Q gi|254780923|r 172 IM-ENHGRDVLPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMI 250 (365) Q Consensus 172 vv-~NRGRDI~PfLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv 250 (365) .- +|+|.- .++-.+++ ..+.|||+.+++== .+ .++.++.+++.++++|..+.+ T Consensus 121 ~~~~n~G~~-~a~N~g~~---~a~gdyi~flD~Dd---------------------~~-~~~~l~~~~~~~~~~~~~~~~ 174 (360) T 2d7i_A 121 RTKKREGLI-RTRMLGAS---VATGDVITFLDSHC---------------------EA-NVNWLPPLLDRIARNRKTIVC 174 (360) T ss_dssp ECSSCCCHH-HHHHHHHH---HCCSSEEEECCSSE---------------------EE-CTTCSHHHHHHHHHCTTEEEE T ss_pred ECCCCCCHH-HHHHHHHH---HCCCCEEEEECCCE---------------------EE-CCCHHHHHHHHHHCCCCCEEE T ss_conf 888986749-99999999---70699799935874---------------------98-810999999998628873361 Q ss_pred ECCC Q ss_conf 1566 Q gi|254780923|r 251 GSRA 254 (365) Q Consensus 251 ~P~~ 254 (365) ++.. T Consensus 175 ~~~~ 178 (360) T 2d7i_A 175 PMID 178 (360) T ss_dssp EEEE T ss_pred CEEE T ss_conf 1032 No 8 >>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} (A:1-123,A:316-361) Probab=49.25 E-value=18 Score=16.56 Aligned_cols=47 Identities=9% Similarity=0.044 Sum_probs=36.6 Q ss_pred CCCCCCCCEEEEEE------EHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 33266377014773------29888878718997121865558888739999999 Q gi|254780923|r 288 DQKLDFFAGTMFWV------RTEALDPIKNLRLSRYFEPKVHKALDGEIEHAVER 336 (365) Q Consensus 288 ~~~~~FpaGSMFW~------Rp~AL~pL~dl~l~~~dFpeE~g~~DGTLaHAIER 336 (365) ++-..+..|++.|. .++.++.|.+.+...-+ -|..+.++|+++.+|= T Consensus 79 ~ei~~lk~G~~lis~l~p~~n~~ll~~l~~kgitaia--lE~IpRist~~y~~~~ 131 (169) T 1pjc_A 79 AEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIA--YETVELPNTLPYVVKL 131 (169) T ss_dssp GGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEE--GGGCCCTTHHHHHHHH T ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCEEEC--CCCCCCCCHHHHHHHH T ss_conf 8986314675899953011587999999746873441--3121247999999999 No 9 >>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} (A:1-230) Probab=49.20 E-value=18 Score=16.56 Aligned_cols=187 Identities=12% Similarity=0.011 Sum_probs=96.2 Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHCC---CCCCEEEEECCCHHHHHHHH---HHHCCCCEEEEEC-CC----CCHHHHH- Q ss_conf 75599999436777999999998189---98318998086317999999---8525883799945-66----7317899- Q gi|254780923|r 116 AKIAIVVHLYYIDLWIEIANLLSNLS---ISFDLHVTLVTESASIKSEI---LKIFPAARIHIME-NH----GRDVLPF- 183 (365) Q Consensus 116 ~KIAV~lHlyY~DLl~Ei~~~L~~ip---~~~DL~ITt~~~~~~~~~~i---~~~~~~~~I~vv~-NR----GRDI~Pf- 183 (365) ++|+|++=.|=.+.+.++++.+.+.. ..+.++|--+.......+.+ ....+.+.+...+ ++ ++-++.- T Consensus 2 p~isViIp~yn~~~l~~~l~si~~q~~~~~~~eIivvDd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (230) T 1fo8_A 2 AVIPILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYY 81 (230) T ss_dssp CCCCEEEEESSCTTHHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHH T ss_pred CCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHH T ss_conf 72218999757889999999998448677883699997599641799999976550266346766652450354313338 Q ss_pred ------HHHHCH-HHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCC Q ss_conf ------975064-4526868899965686767777733447899999987559999999999998628964898156654 Q gi|254780923|r 184 ------LILLET-EQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYR 256 (365) Q Consensus 184 ------Lv~~~~-~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~ 256 (365) -..... ....+.|+|+.+.+-=.. .++.+..++..++++|....+++.... T Consensus 82 ~~~~g~~~a~~~~~~~a~~~~i~~lD~D~~~----------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~ 139 (230) T 1fo8_A 82 KIARHYRWALGQIFHNFNYPAAVVVEDDLEV----------------------APDFFEYFQATYPLLKADPSLWCVSAW 139 (230) T ss_dssp HHHHHHHHHHHHHHTTSCCSEEEEEETTEEE----------------------CTTHHHHHHHHHHHHHHCTTEEEEESC T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCC----------------------CCCHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 8887899999999864378779998378651----------------------700899999999997429980699431 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCC-CCCCCCCCCCCCCCCHHHHHHH Q ss_conf 433332344541022899999999848998733266377014773298888787189-9712186555888873999999 Q gi|254780923|r 257 YPNKYCDYTCSLGKNREMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPIKNLR-LSRYFEPKVHKALDGEIEHAVE 335 (365) Q Consensus 257 ~~~~~~~~~~~wg~N~~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL~dl~-l~~~dFpeE~g~~DGTLaHAIE 335 (365) ... .+..... ...........+..|+.+-+|.++++.+-... ...+ + T Consensus 140 ~~~----------~~~~~~~-----~~~~~~~~~~~~~~g~~~~~r~~~~~~~~~~~~~~~e-----------------D 187 (230) T 1fo8_A 140 NDN----------GKEQMVD-----SSKPELLYRTDFFPGLGWLLLAELWAELEPKWPKAFW-----------------D 187 (230) T ss_dssp CTT----------CBGGGSC-----TTCTTCEEEESSCCCSSEEEEHHHHHHHGGGCCSSCH-----------------H T ss_pred CCC----------CCCCCCC-----CCCCCEEEECCCCCCHHHHCCHHHHHHHCCCCCCCCC-----------------C T ss_conf 256----------8666666-----7887447751467712077049989962744676566-----------------2 Q ss_pred HHHHHHHHHCCCEEEEEHHHH Q ss_conf 999999887398788726642 Q gi|254780923|r 336 RCFSLSVKKANFRISDVDCIL 356 (365) Q Consensus 336 Rl~~~iv~~aGyri~~v~~~~ 356 (365) .-+.+-+..+|+++.-+.... T Consensus 188 ~~~~~~~~~~g~~~~~~~~~~ 208 (230) T 1fo8_A 188 DWMRRPEQRKGRACVRPEISR 208 (230) T ss_dssp HHHTSHHHHTTCEEEEESSBS T ss_pred HHHHHHHHHCCCEEEECCCEE T ss_conf 666557863598577346333 No 10 >>3cnf_A VP1; cytoplasmic polyhedrosis virus, capsid protein, turret protein, polyhedrin-binding domain, guanylyltransferase domain; 3.88A {Bombyx mori cypovirus 1} (A:323-375,A:969-994,A:1252-1275) Probab=37.95 E-value=18 Score=16.61 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=18.4 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 8878718997121865558888739999999999 Q gi|254780923|r 306 LDPIKNLRLSRYFEPKVHKALDGEIEHAVERCFS 339 (365) Q Consensus 306 L~pL~dl~l~~~dFpeE~g~~DGTLaHAIERl~~ 339 (365) |+.|.+.+...+|-.--|-.....+-|||||+-- T Consensus 40 lralmeanvtaddralmptlstsqirhaieriaq 73 (103) T 3cnf_A 40 LRALMEANVTADDRALMPTLSTSQIRHAIERIAQ 73 (103) T ss_pred HHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHH T ss_conf 9999864366899901888676999999999999 No 11 >>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO2589, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} (A:1-41,A:277-391) Probab=36.89 E-value=19 Score=16.40 Aligned_cols=105 Identities=10% Similarity=-0.046 Sum_probs=59.8 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 44789999998755999999999999862896489815665443333234454102289999999984899873326637 Q gi|254780923|r 215 EGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYRYPNKYCDYTCSLGKNREMICTLAGRMGITFQDQKLDFF 294 (365) Q Consensus 215 ~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~~~~~~~~~~~~wg~N~~~~~~L~~rlgi~~~~~~~~Fp 294 (365) -|+.|-..+...+- ...+.+++.|.+.|.+-.+.|.+-.+. |..+........+....|+++.|+-..+...-++ T Consensus 41 ~~d~~i~~~r~~l~---~rr~~l~~~L~~~~~v~v~~P~GG~fi--w~~l~~~~~s~~e~~~~Ll~e~gV~v~PGs~F~~ 115 (156) T 3h14_A 41 PCDAELQANLDVYK---ANRKLXLERLPKAGFTRIAPPDGAFYV--YADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDP 115 (156) T ss_dssp CCHHHHHHHHHHHH---HHHHHHHHHHHHHTCCCBCCCCBTTEE--EEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCT T ss_pred CCCHHHHHHHHHHH---HHHHHHHHHHCCCCCEEECCCCEEEEE--EEECCCCCCCHHHHHHHHHHHCCEEEECCHHCCC T ss_conf 93202578999876---544444443111243175588834799--8989888889999999999849999984221199 Q ss_pred CEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 701477329888878718997121865558888739999999999998 Q gi|254780923|r 295 AGTMFWVRTEALDPIKNLRLSRYFEPKVHKALDGEIEHAVERCFSLSV 342 (365) Q Consensus 295 aGSMFW~Rp~AL~pL~dl~l~~~dFpeE~g~~DGTLaHAIERl~~~iv 342 (365) .++--|+|-.. ...+-.+..|++||--.+- T Consensus 116 ~~~~~~iRi~f------------------a~~~e~l~eai~rL~~al~ 145 (156) T 3h14_A 116 ERGAGTLRFSY------------------ARATADIEEGLDRLEAFXQ 145 (156) T ss_dssp TTGGGEEEEEC------------------CSCHHHHHHHHHHHHHHHH T ss_pred CCCCCEEEEEE------------------CCCHHHHHHHHHHHHHHHH T ss_conf 88999899997------------------3999999999999999999 No 12 >>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} (A:1-121,A:255-277) Probab=34.98 E-value=30 Score=15.21 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=47.8 Q ss_pred CCCCCCCCCCCCEEEEE------EECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHH---CCCCEEEEECCC Q ss_conf 78754312247559999------943677799999999818998318998086317999999852---588379994566 Q gi|254780923|r 106 MGKVMQIAIKAKIAIVV------HLYYIDLWIEIANLLSNLSISFDLHVTLVTESASIKSEILKI---FPAARIHIMENH 176 (365) Q Consensus 106 ~~~~~~~~~k~KIAV~l------HlyY~DLl~Ei~~~L~~ip~~~DL~ITt~~~~~~~~~~i~~~---~~~~~I~vv~NR 176 (365) ..+.........||+++ .-||.+++..+.+.+... .+++.+..+....+.+.+..+. ..---|.++++. T Consensus 10 ~Ar~L~~~~s~~Igiiip~~~~~~~f~~~i~~gi~~~~~~~--gy~v~i~~~~~d~~~~~~~i~~l~~~~vDGiIi~~~~ 87 (144) T 3brq_A 10 LARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARXAEEK--GRQLLLADGKHSAEEERQAIQYLLDLRCDAIXIYPRF 87 (144) T ss_dssp ---------CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--TCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSS T ss_pred HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCC T ss_conf 99997418999799995886546879999999999999985--9999999689998999999998863465302440333 Q ss_pred CCHHH Q ss_conf 73178 Q gi|254780923|r 177 GRDVL 181 (365) Q Consensus 177 GRDI~ 181 (365) -+|.. T Consensus 88 ~~~~~ 92 (144) T 3brq_A 88 LSVDE 92 (144) T ss_dssp SCHHH T ss_pred CCHHH T ss_conf 21178 No 13 >>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:1-78) Probab=28.63 E-value=39 Score=14.56 Aligned_cols=59 Identities=19% Similarity=0.091 Sum_probs=34.0 Q ss_pred CEEEEEEECCHHHHHHHHHHHHHC-------------CCCCCEEEEECCCHHHHHHHHHHHC-CCCEEEEECCCCC Q ss_conf 559999943677799999999818-------------9983189980863179999998525-8837999456673 Q gi|254780923|r 117 KIAIVVHLYYIDLWIEIANLLSNL-------------SISFDLHVTLVTESASIKSEILKIF-PAARIHIMENHGR 178 (365) Q Consensus 117 KIAV~lHlyY~DLl~Ei~~~L~~i-------------p~~~DL~ITt~~~~~~~~~~i~~~~-~~~~I~vv~NRGR 178 (365) ||+++.|-..++..+++.+.++.. +..+|+.||.= ..-.+ -...+.+ .++-|.-+ |.|| T Consensus 2 ki~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Dlvi~iG-GDGT~-L~a~~~~~~~~PvlGi-N~G~ 74 (78) T 1yt5_A 2 KIAILYREEREKEGEFLKEKISKEHEVIEFGEANAPGRVTADLIVVVG-GDGTV-LKAAKKAADGTPMVGF-KAGR 74 (78) T ss_dssp EEEEEECGGGHHHHHHHHHHHTTTSEEEEEEESSSCSCBCCSEEEEEE-CHHHH-HHHHTTBCTTCEEEEE-ESSS T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEEEC-CCHHH-HHHHHHHCCCCCEEEE-ECCC T ss_conf 899998887467899999998876063223034745567878999989-85999-9999971779988976-0365 No 14 >>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} (A:1-104,A:237-271) Probab=27.86 E-value=40 Score=14.48 Aligned_cols=82 Identities=15% Similarity=0.164 Sum_probs=49.7 Q ss_pred CCCEEEEE----EECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHC--CCCEEEEECCCC-CHHHHHHHHH Q ss_conf 47559999----9436777999999998189983189980863179999998525--883799945667-3178999750 Q gi|254780923|r 115 KAKIAIVV----HLYYIDLWIEIANLLSNLSISFDLHVTLVTESASIKSEILKIF--PAARIHIMENHG-RDVLPFLILL 187 (365) Q Consensus 115 k~KIAV~l----HlyY~DLl~Ei~~~L~~ip~~~DL~ITt~~~~~~~~~~i~~~~--~~~~I~vv~NRG-RDI~PfLv~~ 187 (365) |.+||+++ +-||.++...+.+.++.. ++++.+..+....+.+.+..+.+ .+++-.++-+-+ ....|.+..+ T Consensus 1 K~tIgvi~~~~~~~f~~~i~~gi~~~a~~~--G~~l~i~~~~~~~~~~~~~i~~li~~~vdgiIi~~~~~~~~~~~l~~l 78 (139) T 2dri_A 1 KDTIALVVSTLNNPFFVSLKDGAQKEADKL--GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 78 (139) T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHHH--TCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHH T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 988999928898989999999999999985--998999958999999999999998618764432122222316899999 Q ss_pred CHHHHCCCCEEEEE Q ss_conf 64452686889996 Q gi|254780923|r 188 ETEQLSNYDYVCKI 201 (365) Q Consensus 188 ~~~~l~~YD~v~ki 201 (365) .+. +--+|+-= T Consensus 79 ~~~---gIPvV~id 89 (139) T 2dri_A 79 NQA---NIPVITLD 89 (139) T ss_dssp HHT---TCCEEEES T ss_pred HHC---CCCCCCCC T ss_conf 863---77532356 No 15 >>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus HB8} (A:371-496) Probab=26.31 E-value=43 Score=14.31 Aligned_cols=80 Identities=11% Similarity=0.150 Sum_probs=48.1 Q ss_pred CCCCEEEEECCCHHHHHHHHHH--HCCCCEEEEECCCCCHHHHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHH Q ss_conf 9831899808631799999985--25883799945667317899975064452686889996568676777773344789 Q gi|254780923|r 142 ISFDLHVTLVTESASIKSEILK--IFPAARIHIMENHGRDVLPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLW 219 (365) Q Consensus 142 ~~~DL~ITt~~~~~~~~~~i~~--~~~~~~I~vv~NRGRDI~PfLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~W 219 (365) ...|+||-......++...+.+ ..++.++..+-|||--|-|- +.. +..---.+-|.+..+..... T Consensus 20 VGVDVfv~w~~~~~~L~~~l~~l~~~~~lkL~~IsnRGvkVWP~--~~~-et~~tDhwrCRF~~~~~~~i---------- 86 (126) T 2d1c_A 20 VGVDVFVETNLLPEALGKALEDLAAGTPFRLKMISNRGTQVYPP--TGG-LTDLVDHYRCRFLYTGEGEA---------- 86 (126) T ss_dssp EEEEEEEECCSCHHHHHHHHHHHHTTSSEEEEEEEETTEEEESC--CSC-CCCCCSEEEEEEEECSSSCC---------- T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCEEECCC--CCC-CCCCCCCEEEEEEECCCCCC---------- T ss_conf 87689997599989999999850469980799993298678999--998-76555665888875798867---------- Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHC Q ss_conf 9999987559999999999998628 Q gi|254780923|r 220 RRWLFYDLLGAPGVVFKIIRTFDTH 244 (365) Q Consensus 220 R~~Ll~~LLGs~~~V~~Il~~F~~n 244 (365) +...|.++|..++.. T Consensus 87 ----------~~~~I~~LL~~l~a~ 101 (126) T 2d1c_A 87 ----------KDPEILDLVSRVASR 101 (126) T ss_dssp ----------CHHHHHHHHHHHHTT T ss_pred ----------CHHHHHHHHHHHHCC T ss_conf ----------789999999999759 No 16 >>1vkr_A Mannitol-specific PTS system enzyme iiabc components; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli O157} (A:) Probab=24.03 E-value=47 Score=14.05 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=16.1 Q ss_pred HHCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEC Q ss_conf 8189983189980863179999998525883799945 Q gi|254780923|r 138 SNLSISFDLHVTLVTESASIKSEILKIFPAARIHIME 174 (365) Q Consensus 138 ~~ip~~~DL~ITt~~~~~~~~~~i~~~~~~~~I~vv~ 174 (365) ..++..+|++||| ..+..++....+.+.|..+. T Consensus 54 ~~~~~~~DlIitt----~~l~~~~~~~~~~~~vi~v~ 86 (125) T 1vkr_A 54 NNLPPDVDLVITH----RDLTERAMRQVPQAQHISLT 86 (125) T ss_dssp TCCCTTCSEEEEE----HHHHHHHHHHCTTSEEEEES T ss_pred HCCCCCCCEEEEC----HHHHHHHHHCCCCCEEEEEE T ss_conf 2178898799988----78889998229998399982 No 17 >>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5'-triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} (A:1-269) Probab=20.60 E-value=55 Score=13.63 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=29.4 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHH-----HHHHHHCHHHHC-CCCEEEEECCCCCCC Q ss_conf 99999985258837999456673178-----999750644526-868899965686767 Q gi|254780923|r 156 SIKSEILKIFPAARIHIMENHGRDVL-----PFLILLETEQLS-NYDYVCKIHGKKSKR 208 (365) Q Consensus 156 ~~~~~i~~~~~~~~I~vv~NRGRDI~-----PfLv~~~~~~l~-~YD~v~kiHTKKS~~ 208 (365) +++..+.+.....+|.++| .|=-|+ |||.+.+....+ +.+-+|.+|.-=-|. T Consensus 122 eIk~~I~~~a~~~Di~ivE-IGGTVGDIES~pFlEAirQl~~~~g~~n~~~iHvtlvPy 179 (269) T 1s1m_A 122 AIKERVLEGGEGHDVVLVE-IGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPY 179 (269) T ss_dssp HHHHHHHHHHTTCSEEEEE-ECSCTTSSTTHHHHHHHHHHHHHHCTTSEEEEEEEECCE T ss_pred HHHHHHHHCCCCCCEEEEE-CCCHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCC T ss_conf 9999997046778679997-132044553064999999998760887689995124443 No 18 >>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription regulator; 2.30A {Thermococcus kodakarensis KOD1} (A:14-95) Probab=20.51 E-value=55 Score=13.62 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=9.1 Q ss_pred HHHCCCCEEEEECCCC Q ss_conf 8525883799945667 Q gi|254780923|r 162 LKIFPAARIHIMENHG 177 (365) Q Consensus 162 ~~~~~~~~I~vv~NRG 177 (365) .+.-+...|.+|||.| T Consensus 53 ~k~~~Gi~i~vvP~kg 68 (82) T 2czr_A 53 GKDVNGIHIVAIPDNG 68 (82) T ss_dssp SCCCSSEEEEEESCTT T ss_pred CCCCCCEEEEEECCCC T ss_conf 0557981899977997 Done!