Query         gi|254780923|ref|YP_003065336.1| hypothetical protein CLIBASIA_04110 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 365
No_of_seqs    111 out of 158
Neff          5.0 
Searched_HMMs 33803
Date          Wed Jun  1 19:26:40 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780923.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3ckj_A Putative uncharacteriz  94.3    0.18 5.3E-06   28.6   6.8  178  106-309    38-228 (329)
  2 >1omz_A Alpha-1,4-N-acetylhexo  92.9    0.53 1.6E-05   25.8   7.2  123  107-255    19-145 (293)
  3 >2z86_A Chondroitin synthase;   87.0     2.1 6.3E-05   22.2  12.4  120  111-255    30-155 (295)
  4 >1qg8_A Protein (spore coat po  83.4     3.2 9.4E-05   21.1   6.5  162  116-312     1-174 (255)
  5 >3f1y_A Mannosyl-3-phosphoglyc  83.3     3.2 9.4E-05   21.1   8.6  178  106-309    84-273 (387)
  6 >2ffu_A Ppgalnact-2, polypepti  72.0     6.9  0.0002   19.1  11.9  179  107-311    57-253 (370)
  7 >2d7i_A Polypeptide N-acetylga  65.1     9.7 0.00029   18.2  10.6  128  101-254    41-178 (360)
  8 >1pjc_A Protein (L-alanine deh  49.3      18 0.00053   16.6   4.0   47  288-336    79-131 (169)
  9 >1fo8_A Alpha-1,3-mannosyl-gly  49.2      18 0.00053   16.6  10.2  187  116-356     2-208 (230)
 10 >3cnf_A VP1; cytoplasmic polyh  37.9      18 0.00052   16.6   1.8   34  306-339    40-73  (103)
 11 >3h14_A Aminotransferase, clas  36.9      19 0.00057   16.4   1.8  105  215-342    41-145 (156)
 12 >3brq_A HTH-type transcription  35.0      30 0.00089   15.2   6.0   74  106-181    10-92  (144)
 13 >1yt5_A Inorganic polyphosphat  28.6      39  0.0011   14.6   6.3   59  117-178     2-74  (78)
 14 >2dri_A D-ribose-binding prote  27.9      40  0.0012   14.5   6.0   82  115-201     1-89  (139)
 15 >2d1c_A Isocitrate dehydrogena  26.3      43  0.0013   14.3   3.3   80  142-244    20-101 (126)
 16 >1vkr_A Mannitol-specific PTS   24.0      47  0.0014   14.1   4.3   33  138-174    54-86  (125)
 17 >1s1m_A CTP synthase; CTP synt  20.6      55  0.0016   13.6   3.2   52  156-208   122-179 (269)
 18 >2czr_A TBP-interacting protei  20.5      55  0.0016   13.6   3.2   16  162-177    53-68  (82)

No 1  
>>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A (A:)
Probab=94.33  E-value=0.18  Score=28.60  Aligned_cols=178  Identities=13%  Similarity=-0.000  Sum_probs=93.2

Q ss_pred             CCCCCCCCCCCCEEEEEEECC-HHHHHHHHHHHHHCC--CCCCEEEEECC--C-HHHHHHHHHHHCCCCEEEE---ECCC
Q ss_conf             787543122475599999436-777999999998189--98318998086--3-1799999985258837999---4566
Q gi|254780923|r  106 MGKVMQIAIKAKIAIVVHLYY-IDLWIEIANLLSNLS--ISFDLHVTLVT--E-SASIKSEILKIFPAARIHI---MENH  176 (365)
Q Consensus       106 ~~~~~~~~~k~KIAV~lHlyY-~DLl~Ei~~~L~~ip--~~~DL~ITt~~--~-~~~~~~~i~~~~~~~~I~v---v~NR  176 (365)
                      .++.+.....++|+|++=.|= .+.+.++++.+.+-.  .++.++|.-+.  + ..++.++.....+...+.+   -.|.
T Consensus        38 ~~~~~~~~~~p~vsIiIp~yN~~~~l~~~l~sl~~q~~~~~~eiivvDd~S~D~t~~~~~~~~~~~~~~~~~~~~~~~~~  117 (329)
T 3ckj_A           38 VAELEAAKAGRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALPEVPIRP  117 (329)
T ss_dssp             HHHHHHTTTTCCEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCTTSCCCC
T ss_pred             HHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCC
T ss_conf             45565333799799998268788899999999985157999689999896963489999872322235541577244300


Q ss_pred             CCHHHHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf             73178999750644526868899965686767777733447899999987559999999999998628964898156654
Q gi|254780923|r  177 GRDVLPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYR  256 (365)
Q Consensus       177 GRDI~PfLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~  256 (365)
                      |.- +..-.++   ...+.|+|+.+.+=-                     .+-+++.++.++..++.+|..+++++....
T Consensus       118 g~~-~a~n~~~---~~a~~~~i~~~D~Dd---------------------~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~  172 (329)
T 3ckj_A          118 GKG-EALWRSL---AASRGDIVVFVDSDL---------------------INPHPMFVPWLVGPLLTGDGVHLVKSFYRR  172 (329)
T ss_dssp             SHH-HHHHHHH---HHCCCSEEEECCTTE---------------------ESCCTTHHHHHHHHHHSCSSCCEEEEEEEC
T ss_pred             HHH-HHHHHHH---HHCCCCCEEEECCCC---------------------CCCCHHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf             499-9999999---964746069973788---------------------889999999999999739865422013300


Q ss_pred             CCCCCCCC--CCCCHHHH--HHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHH
Q ss_conf             43333234--45410228--9999999984899873326637701477329888878
Q gi|254780923|r  257 YPNKYCDY--TCSLGKNR--EMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPI  309 (365)
Q Consensus       257 ~~~~~~~~--~~~wg~N~--~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL  309 (365)
                      ........  ...+..+.  ........... .........+.|+.+-.|.+++..+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~  228 (329)
T 3ckj_A          173 PLNVGDAGGGAGATGGGRVTELVARPLLAAL-RPELGCILQPLGGEYAATRELLTSV  228 (329)
T ss_dssp             C---------------CHHHHHTHHHHHHHH-CGGGGGCSCTTCSCEEEEHHHHTTS
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHCCCEEECCCCCEEEEHHHHHHC
T ss_conf             2555544554332222188999999999986-4220330015764478749999768


No 2  
>>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} (A:)
Probab=92.93  E-value=0.53  Score=25.76  Aligned_cols=123  Identities=11%  Similarity=0.009  Sum_probs=80.9

Q ss_pred             CCCCCCCCCCCEEEEEEECC-HHHHHHHHHHHHHCCCCCCEEEEECCCH---HHHHHHHHHHCCCCEEEEECCCCCHHHH
Q ss_conf             87543122475599999436-7779999999981899831899808631---7999999852588379994566731789
Q gi|254780923|r  107 GKVMQIAIKAKIAIVVHLYY-IDLWIEIANLLSNLSISFDLHVTLVTES---ASIKSEILKIFPAARIHIMENHGRDVLP  182 (365)
Q Consensus       107 ~~~~~~~~k~KIAV~lHlyY-~DLl~Ei~~~L~~ip~~~DL~ITt~~~~---~~~~~~i~~~~~~~~I~vv~NRGRDI~P  182 (365)
                      .+......+++|+|++=.|= .+.++++++.+.+-..+.+.+|-.+...   .+...+.....+...+..-+|.|--.+-
T Consensus        19 ~~~~~~~~~p~isViIp~yN~~~~l~~~l~sl~~q~~~~~~iiv~d~ss~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   98 (293)
T 1omz_A           19 IKSPSKSALDSFTLIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRNR   98 (293)
T ss_dssp             -------CTTCEEEEEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGGG
T ss_pred             CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHH
T ss_conf             66867688898799996689879999999999819999809999899999878999997478987799962788847763


Q ss_pred             HHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             9975064452686889996568676777773344789999998755999999999999862896489815665
Q gi|254780923|r  183 FLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAY  255 (365)
Q Consensus       183 fLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~  255 (365)
                       -.+   ....+.|+|+.+.+-=                     .+ +++.++.+++.++++|..+++++...
T Consensus        99 -n~~---~~~a~~~~i~~lD~D~---------------------~~-~~~~l~~~~~~~~~~~~~~~~~~~~~  145 (293)
T 1omz_A           99 -LQV---FPEVETNAVLMVDDDT---------------------LI-SAQDLVFAFSIWQQFPDQIIGFVPRK  145 (293)
T ss_dssp             -GSC---CTTCCSSEEEEECTTE---------------------EE-CHHHHHHHHHHHTTSTTSEEESCEEE
T ss_pred             -CHH---HHHCCCCEEEEECCCC---------------------CC-CHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             -440---7656847799986864---------------------21-37899999999997887679643210


No 3  
>>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* (A:59-353)
Probab=87.04  E-value=2.1  Score=22.15  Aligned_cols=120  Identities=17%  Similarity=0.201  Sum_probs=79.7

Q ss_pred             CCCCCCCEEEEEEEC-CHHHHHHHHHHHHHCC--CCCCEEEEEC--CC-HHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
Q ss_conf             312247559999943-6777999999998189--9831899808--63-1799999985258837999456673178999
Q gi|254780923|r  111 QIAIKAKIAIVVHLY-YIDLWIEIANLLSNLS--ISFDLHVTLV--TE-SASIKSEILKIFPAARIHIMENHGRDVLPFL  184 (365)
Q Consensus       111 ~~~~k~KIAV~lHly-Y~DLl~Ei~~~L~~ip--~~~DL~ITt~--~~-~~~~~~~i~~~~~~~~I~vv~NRGRDI~PfL  184 (365)
                      +....++|+|++=.| -++.+.++++.+.+-.  ..+.++|.-+  ++ ..++.++.....+.+.+...++.+.=-...-
T Consensus        30 ~~~~~p~isViIp~yN~~~~l~~~l~sl~~q~~~~~~eiivvDd~S~D~t~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  109 (295)
T 2z86_A           30 KQLIIDGLSIVIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYVRQKDYGYQLCAVRN  109 (295)
T ss_dssp             --CCCCCEEEEEEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEEEEECCCSCCHHHHHH
T ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH
T ss_conf             66868998999963799899999999997169999859999989898218999997513699699996899857899999


Q ss_pred             HHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             75064452686889996568676777773344789999998755999999999999862896489815665
Q gi|254780923|r  185 ILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAY  255 (365)
Q Consensus       185 v~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~  255 (365)
                      .+..   ..+.|+|+.+.+=--                     + .++.+..++..+..+|..+++++...
T Consensus       110 ~~~~---~a~~d~i~~lD~D~~---------------------~-~~~~l~~~~~~~~~~~~~~~~~~~~~  155 (295)
T 2z86_A          110 LGLR---AAKYNYVAILDCDMA---------------------P-NPLWVQSYMELLAVDDNVALIGPRKY  155 (295)
T ss_dssp             HHHH---HCCSSEEEEECTTEE---------------------E-CTTHHHHHHHHHHHCTTEEEECCEEE
T ss_pred             HHHH---HCCCCEEEEECCCCC---------------------C-CHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             9999---759998999889724---------------------4-81399999999984998599987774


No 4  
>>1qg8_A Protein (spore coat polysaccharide biosynthesis protein SPSA); glycosyltransferase; 1.50A {Bacillus subtilis} (A:)
Probab=83.36  E-value=3.2  Score=21.10  Aligned_cols=162  Identities=14%  Similarity=0.153  Sum_probs=84.7

Q ss_pred             CCEEEEEEEC-CHHHHHHHHHHHHHCC-CCCCEEEEECCCHHHHHHHHHH---HCCCCE-----EEEE-CCCCCHHH-HH
Q ss_conf             7559999943-6777999999998189-9831899808631799999985---258837-----9994-56673178-99
Q gi|254780923|r  116 AKIAIVVHLY-YIDLWIEIANLLSNLS-ISFDLHVTLVTESASIKSEILK---IFPAAR-----IHIM-ENHGRDVL-PF  183 (365)
Q Consensus       116 ~KIAV~lHly-Y~DLl~Ei~~~L~~ip-~~~DL~ITt~~~~~~~~~~i~~---~~~~~~-----I~vv-~NRGRDI~-Pf  183 (365)
                      |+|+|++=.| -++.+.++++.+.+.. .++.++|..+.........+.+   ..+...     +.++ .+++.-.+ ..
T Consensus         1 P~isViip~yn~~~~l~~~l~sl~~q~~~~~eiiivdd~S~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   80 (255)
T 1qg8_A            1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALI   80 (255)
T ss_dssp             CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHH
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             97999995389889999999999828899859999989797308999999743012221111234321121345599999


Q ss_pred             HHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
Q ss_conf             97506445268688999656867677777334478999999875599999999999986289648981566544333323
Q gi|254780923|r  184 LILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYRYPNKYCD  263 (365)
Q Consensus       184 Lv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~~~~~~~~  263 (365)
                      -.++   ...+.|+|+.+++==                     .+ +++.+..++..++++|..+++++........   
T Consensus        81 ~~~~---~~a~~d~i~~lD~D~---------------------~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~---  132 (255)
T 1qg8_A           81 NQAI---EMAEGEYITYATDDN---------------------IY-MPDRLLKMVRELDTHPEKAVIYSASKTYHLN---  132 (255)
T ss_dssp             HHHH---HHCCCSEEEEEETTE---------------------EE-CTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC---
T ss_pred             HHHH---HHCCCCEEEEECCCC---------------------CC-CCCHHHHHHHHHHHCCCEEEEEEEEEEEEEC---
T ss_conf             9987---616876689960674---------------------31-0238999999998689815999433999967---


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCC
Q ss_conf             4454102289999999984899873326637701477329888878718
Q gi|254780923|r  264 YTCSLGKNREMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPIKNL  312 (365)
Q Consensus       264 ~~~~wg~N~~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL~dl  312 (365)
                            .+....... .............+..|+..-++..+++...-.
T Consensus       133 ------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (255)
T 1qg8_A          133 ------ENRDIVKET-VRPAAQVTWNAPCAIDHCSVMHRYSVLEKVKEK  174 (255)
T ss_dssp             ---------CEEEEE-EECCCSCBSCCTTTSCGGGEEEETHHHHHHHHH
T ss_pred             ------CCCCEECCC-CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             ------986352444-474045566403667666147799999998776


No 5  
>>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, GDP- mannose; 2.20A {Rubrobacter xylanophilus} (A:)
Probab=83.33  E-value=3.2  Score=21.09  Aligned_cols=178  Identities=11%  Similarity=-0.020  Sum_probs=92.1

Q ss_pred             CCCCCCCCCCCCEEEEEEECC-HHHHHHHHHHHHH----CCCCCCEEEEEC--CC-HHHHHHHHHHHCCCCEEEE---EC
Q ss_conf             787543122475599999436-7779999999981----899831899808--63-1799999985258837999---45
Q gi|254780923|r  106 MGKVMQIAIKAKIAIVVHLYY-IDLWIEIANLLSN----LSISFDLHVTLV--TE-SASIKSEILKIFPAARIHI---ME  174 (365)
Q Consensus       106 ~~~~~~~~~k~KIAV~lHlyY-~DLl~Ei~~~L~~----ip~~~DL~ITt~--~~-~~~~~~~i~~~~~~~~I~v---v~  174 (365)
                      .+...+...+++|.|++=.|= .+.+.++++.+.+    -..++.++|.-+  ++ ..++..+.....+...+.+   -+
T Consensus        84 ~~~~~~~~~~~~iSViIp~yN~~~~l~~~l~sl~~~~~q~~~~~EIIVVDdgStD~t~~i~~~~~~~~~~~~~~~~~~~~  163 (387)
T 3f1y_A           84 DLARRKRELGLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAASHGAEVYSENELMSGYGD  163 (387)
T ss_dssp             HHHHHHHHHTCCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCSSSHHHHHHHTTCEEEEGGGTTGGGCS
T ss_pred             HHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf             99974124899899996768787799999999999863679982899998959716799999861522566536763124


Q ss_pred             CCCCHHHHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             66731789997506445268688999656867677777334478999999875599999999999986289648981566
Q gi|254780923|r  175 NHGRDVLPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRA  254 (365)
Q Consensus       175 NRGRDI~PfLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~  254 (365)
                      |.|.-- ++-.++.   ..+.|+|+.+.+=-.                     +-+++.++.++..+.++|+++++.+..
T Consensus       164 ~~g~~~-a~n~g~~---~a~gd~i~~lD~D~~---------------------~~~~~~l~~l~~~~~~~~~~~~v~~~~  218 (387)
T 3f1y_A          164 AHGKGD-AMWRALS---VTRGDLVLYIDADTR---------------------DFRPQLAYGVLGPVLEVPGVRFVKAAY  218 (387)
T ss_dssp             CCSHHH-HHHHHTT---TCCSSEEEECCTTCS---------------------SCCTHHHHTTHHHHHHSTTCCEEEEEE
T ss_pred             CCCCHH-HHHHHHH---HHCCCCCEEECCCCC---------------------CCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             688237-7500355---412331214437677---------------------799999999999998489730563211


Q ss_pred             CCCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHH
Q ss_conf             54433332344-54102289999999984899873326637701477329888878
Q gi|254780923|r  255 YRYPNKYCDYT-CSLGKNREMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPI  309 (365)
Q Consensus       255 ~~~~~~~~~~~-~~wg~N~~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL  309 (365)
                      ......-.... ..+............+..... ........|.++-.|.+++..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  273 (387)
T 3f1y_A          219 RRPFRKGESIEEDGGGRVTELTAKPLFNLFYPE-LAGFVQPLAGEFVADRELFCSI  273 (387)
T ss_dssp             ECC-------CCBCCSHHHHHTHHHHHHHHCGG-GTTCSCTTCSCEEEEHHHHTTS
T ss_pred             ECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CCCEECCCCCCEEEEHHHHHCC
T ss_conf             013477763223320345555543565410234-4530036655367877663256


No 6  
>>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* (A:1-370)
Probab=72.03  E-value=6.9  Score=19.06  Aligned_cols=179  Identities=7%  Similarity=-0.044  Sum_probs=97.7

Q ss_pred             CCCCCCCCCCCEEEEEEECC-HH-HHHHHHHHHHHCCCC---CCEEEEECCCHHHHHHHHHHHCCCCEEEE-ECCCCCHH
Q ss_conf             87543122475599999436-77-799999999818998---31899808631799999985258837999-45667317
Q gi|254780923|r  107 GKVMQIAIKAKIAIVVHLYY-ID-LWIEIANLLSNLSIS---FDLHVTLVTESASIKSEILKIFPAARIHI-MENHGRDV  180 (365)
Q Consensus       107 ~~~~~~~~k~KIAV~lHlyY-~D-Ll~Ei~~~L~~ip~~---~DL~ITt~~~~~~~~~~i~~~~~~~~I~v-v~NRGRDI  180 (365)
                      .......-.++|.|++=.|= .+ ++.++++.+.+-..+   +.++|.-+.........+.+..++..+.. -+|+|.- 
T Consensus        57 ~~~~~~~~~p~iSIIIp~yN~~e~~l~~~l~Si~~Q~~~~~~~EIIvVDDgStD~t~~~~~~~~~~~~~i~~~~n~G~~-  135 (370)
T 2ffu_A           57 QRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLM-  135 (370)
T ss_dssp             GGCCCCSSCCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBTTEEEEECSSCCHHH-
T ss_pred             CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCHH-
T ss_conf             1366799999727999767581799999999999649352088799997899756799999628880599788986748-


Q ss_pred             HHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf             89997506445268688999656867677777334478999999875599999999999986289648981566544333
Q gi|254780923|r  181 LPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYRYPNK  260 (365)
Q Consensus       181 ~PfLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~~~~~  260 (365)
                      +++-.+++   ..+.|+|+.+.+=                     ..+ .++.+..++..++++|..++++.........
T Consensus       136 ~a~N~gi~---~a~ge~i~flD~D---------------------d~~-~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  190 (370)
T 2ffu_A          136 RSRVRGAD---AAQAKVLTFLDSH---------------------CEC-NEHWLEPLLERVAEDRTRVVSPIIDVINMDN  190 (370)
T ss_dssp             HHHHHHHH---HCCSSEEEECCSS---------------------EEE-CTTCHHHHHHHHHHCTTEEEEEEEEEECTTT
T ss_pred             HHHHHHHH---HCCCCEEEEECCC---------------------CCC-CCHHHHHHHHHHHHCCCCCCCCEEEECCCCC
T ss_conf             99999888---6689889995353---------------------030-5018999999986267630122354207987


Q ss_pred             CCC------------CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHC
Q ss_conf             323------------445410228999999998489987332663770147732988887871
Q gi|254780923|r  261 YCD------------YTCSLGKNREMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPIKN  311 (365)
Q Consensus       261 ~~~------------~~~~wg~N~~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL~d  311 (365)
                      ...            .............................+..|....+|.+++..+--
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (370)
T 2ffu_A          191 FQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGK  253 (370)
T ss_dssp             CCEECBCSSEEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHHHHHTTC
T ss_pred             CEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCC
T ss_conf             033045544355422243333243443554301234456543553121689999999998399


No 7  
>>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* (A:57-416)
Probab=65.06  E-value=9.7  Score=18.18  Aligned_cols=128  Identities=9%  Similarity=0.049  Sum_probs=81.8

Q ss_pred             CCCCCCCCCCCCCCCCCEEEEEEECC--HHHHHHHHHHHHHCCCC---CCEEEEEC--CC-HHH-HHHHHHHHCCCCEEE
Q ss_conf             15877787543122475599999436--77799999999818998---31899808--63-179-999998525883799
Q gi|254780923|r  101 WESPAMGKVMQIAIKAKIAIVVHLYY--IDLWIEIANLLSNLSIS---FDLHVTLV--TE-SAS-IKSEILKIFPAARIH  171 (365)
Q Consensus       101 ~~~p~~~~~~~~~~k~KIAV~lHlyY--~DLl~Ei~~~L~~ip~~---~DL~ITt~--~~-~~~-~~~~i~~~~~~~~I~  171 (365)
                      ...+...........++|.|++=.|=  .+.+.++++.+.+-..+   +.++|--+  ++ ..+ +........+...+.
T Consensus        41 ~~~~~~~~~~~~~~~p~vSIIIP~yN~~e~~l~~~l~Si~~Qt~~~~~~eIIivDd~s~d~t~~~i~~~~~~~~~~~~~i  120 (360)
T 2d7i_A           41 IRHPNCNSKRYLETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRIL  120 (360)
T ss_dssp             CSCGGGGTCCEESSCCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEE
T ss_pred             CCCHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             88954500667778996799998576838999999999995588668858999989999726789999999648988999


Q ss_pred             EE-CCCCCHHHHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             94-56673178999750644526868899965686767777733447899999987559999999999998628964898
Q gi|254780923|r  172 IM-ENHGRDVLPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMI  250 (365)
Q Consensus       172 vv-~NRGRDI~PfLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv  250 (365)
                      .- +|+|.- .++-.+++   ..+.|||+.+++==                     .+ .++.++.+++.++++|..+.+
T Consensus       121 ~~~~n~G~~-~a~N~g~~---~a~gdyi~flD~Dd---------------------~~-~~~~l~~~~~~~~~~~~~~~~  174 (360)
T 2d7i_A          121 RTKKREGLI-RTRMLGAS---VATGDVITFLDSHC---------------------EA-NVNWLPPLLDRIARNRKTIVC  174 (360)
T ss_dssp             ECSSCCCHH-HHHHHHHH---HCCSSEEEECCSSE---------------------EE-CTTCSHHHHHHHHHCTTEEEE
T ss_pred             ECCCCCCHH-HHHHHHHH---HCCCCEEEEECCCE---------------------EE-CCCHHHHHHHHHHCCCCCEEE
T ss_conf             888986749-99999999---70699799935874---------------------98-810999999998628873361


Q ss_pred             ECCC
Q ss_conf             1566
Q gi|254780923|r  251 GSRA  254 (365)
Q Consensus       251 ~P~~  254 (365)
                      ++..
T Consensus       175 ~~~~  178 (360)
T 2d7i_A          175 PMID  178 (360)
T ss_dssp             EEEE
T ss_pred             CEEE
T ss_conf             1032


No 8  
>>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} (A:1-123,A:316-361)
Probab=49.25  E-value=18  Score=16.56  Aligned_cols=47  Identities=9%  Similarity=0.044  Sum_probs=36.6

Q ss_pred             CCCCCCCCEEEEEE------EHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             33266377014773------29888878718997121865558888739999999
Q gi|254780923|r  288 DQKLDFFAGTMFWV------RTEALDPIKNLRLSRYFEPKVHKALDGEIEHAVER  336 (365)
Q Consensus       288 ~~~~~FpaGSMFW~------Rp~AL~pL~dl~l~~~dFpeE~g~~DGTLaHAIER  336 (365)
                      ++-..+..|++.|.      .++.++.|.+.+...-+  -|..+.++|+++.+|=
T Consensus        79 ~ei~~lk~G~~lis~l~p~~n~~ll~~l~~kgitaia--lE~IpRist~~y~~~~  131 (169)
T 1pjc_A           79 AEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIA--YETVELPNTLPYVVKL  131 (169)
T ss_dssp             GGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEE--GGGCCCTTHHHHHHHH
T ss_pred             HHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCEEEC--CCCCCCCCHHHHHHHH
T ss_conf             8986314675899953011587999999746873441--3121247999999999


No 9  
>>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} (A:1-230)
Probab=49.20  E-value=18  Score=16.56  Aligned_cols=187  Identities=12%  Similarity=0.011  Sum_probs=96.2

Q ss_pred             CCEEEEEEECCHHHHHHHHHHHHHCC---CCCCEEEEECCCHHHHHHHH---HHHCCCCEEEEEC-CC----CCHHHHH-
Q ss_conf             75599999436777999999998189---98318998086317999999---8525883799945-66----7317899-
Q gi|254780923|r  116 AKIAIVVHLYYIDLWIEIANLLSNLS---ISFDLHVTLVTESASIKSEI---LKIFPAARIHIME-NH----GRDVLPF-  183 (365)
Q Consensus       116 ~KIAV~lHlyY~DLl~Ei~~~L~~ip---~~~DL~ITt~~~~~~~~~~i---~~~~~~~~I~vv~-NR----GRDI~Pf-  183 (365)
                      ++|+|++=.|=.+.+.++++.+.+..   ..+.++|--+.......+.+   ....+.+.+...+ ++    ++-++.- 
T Consensus         2 p~isViIp~yn~~~l~~~l~si~~q~~~~~~~eIivvDd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (230)
T 1fo8_A            2 AVIPILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYY   81 (230)
T ss_dssp             CCCCEEEEESSCTTHHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHH
T ss_pred             CCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf             72218999757889999999998448677883699997599641799999976550266346766652450354313338


Q ss_pred             ------HHHHCH-HHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf             ------975064-4526868899965686767777733447899999987559999999999998628964898156654
Q gi|254780923|r  184 ------LILLET-EQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYR  256 (365)
Q Consensus       184 ------Lv~~~~-~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~  256 (365)
                            -..... ....+.|+|+.+.+-=..                      .++.+..++..++++|....+++....
T Consensus        82 ~~~~g~~~a~~~~~~~a~~~~i~~lD~D~~~----------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~  139 (230)
T 1fo8_A           82 KIARHYRWALGQIFHNFNYPAAVVVEDDLEV----------------------APDFFEYFQATYPLLKADPSLWCVSAW  139 (230)
T ss_dssp             HHHHHHHHHHHHHHTTSCCSEEEEEETTEEE----------------------CTTHHHHHHHHHHHHHHCTTEEEEESC
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEECCCCCC----------------------CCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             8887899999999864378779998378651----------------------700899999999997429980699431


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCC-CCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             433332344541022899999999848998733266377014773298888787189-9712186555888873999999
Q gi|254780923|r  257 YPNKYCDYTCSLGKNREMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPIKNLR-LSRYFEPKVHKALDGEIEHAVE  335 (365)
Q Consensus       257 ~~~~~~~~~~~wg~N~~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL~dl~-l~~~dFpeE~g~~DGTLaHAIE  335 (365)
                      ...          .+.....     ...........+..|+.+-+|.++++.+-... ...+                 +
T Consensus       140 ~~~----------~~~~~~~-----~~~~~~~~~~~~~~g~~~~~r~~~~~~~~~~~~~~~e-----------------D  187 (230)
T 1fo8_A          140 NDN----------GKEQMVD-----SSKPELLYRTDFFPGLGWLLLAELWAELEPKWPKAFW-----------------D  187 (230)
T ss_dssp             CTT----------CBGGGSC-----TTCTTCEEEESSCCCSSEEEEHHHHHHHGGGCCSSCH-----------------H
T ss_pred             CCC----------CCCCCCC-----CCCCCEEEECCCCCCHHHHCCHHHHHHHCCCCCCCCC-----------------C
T ss_conf             256----------8666666-----7887447751467712077049989962744676566-----------------2


Q ss_pred             HHHHHHHHHCCCEEEEEHHHH
Q ss_conf             999999887398788726642
Q gi|254780923|r  336 RCFSLSVKKANFRISDVDCIL  356 (365)
Q Consensus       336 Rl~~~iv~~aGyri~~v~~~~  356 (365)
                      .-+.+-+..+|+++.-+....
T Consensus       188 ~~~~~~~~~~g~~~~~~~~~~  208 (230)
T 1fo8_A          188 DWMRRPEQRKGRACVRPEISR  208 (230)
T ss_dssp             HHHTSHHHHTTCEEEEESSBS
T ss_pred             HHHHHHHHHCCCEEEECCCEE
T ss_conf             666557863598577346333


No 10 
>>3cnf_A VP1; cytoplasmic polyhedrosis virus, capsid protein, turret protein, polyhedrin-binding domain, guanylyltransferase domain; 3.88A {Bombyx mori cypovirus 1} (A:323-375,A:969-994,A:1252-1275)
Probab=37.95  E-value=18  Score=16.61  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=18.4

Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             8878718997121865558888739999999999
Q gi|254780923|r  306 LDPIKNLRLSRYFEPKVHKALDGEIEHAVERCFS  339 (365)
Q Consensus       306 L~pL~dl~l~~~dFpeE~g~~DGTLaHAIERl~~  339 (365)
                      |+.|.+.+...+|-.--|-.....+-|||||+--
T Consensus        40 lralmeanvtaddralmptlstsqirhaieriaq   73 (103)
T 3cnf_A           40 LRALMEANVTADDRALMPTLSTSQIRHAIERIAQ   73 (103)
T ss_pred             HHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             9999864366899901888676999999999999


No 11 
>>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO2589, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} (A:1-41,A:277-391)
Probab=36.89  E-value=19  Score=16.40  Aligned_cols=105  Identities=10%  Similarity=-0.046  Sum_probs=59.8

Q ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             44789999998755999999999999862896489815665443333234454102289999999984899873326637
Q gi|254780923|r  215 EGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYRYPNKYCDYTCSLGKNREMICTLAGRMGITFQDQKLDFF  294 (365)
Q Consensus       215 ~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~~~~~~~~~~~~wg~N~~~~~~L~~rlgi~~~~~~~~Fp  294 (365)
                      -|+.|-..+...+-   ...+.+++.|.+.|.+-.+.|.+-.+.  |..+........+....|+++.|+-..+...-++
T Consensus        41 ~~d~~i~~~r~~l~---~rr~~l~~~L~~~~~v~v~~P~GG~fi--w~~l~~~~~s~~e~~~~Ll~e~gV~v~PGs~F~~  115 (156)
T 3h14_A           41 PCDAELQANLDVYK---ANRKLXLERLPKAGFTRIAPPDGAFYV--YADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDP  115 (156)
T ss_dssp             CCHHHHHHHHHHHH---HHHHHHHHHHHHHTCCCBCCCCBTTEE--EEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCT
T ss_pred             CCCHHHHHHHHHHH---HHHHHHHHHHCCCCCEEECCCCEEEEE--EEECCCCCCCHHHHHHHHHHHCCEEEECCHHCCC
T ss_conf             93202578999876---544444443111243175588834799--8989888889999999999849999984221199


Q ss_pred             CEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             701477329888878718997121865558888739999999999998
Q gi|254780923|r  295 AGTMFWVRTEALDPIKNLRLSRYFEPKVHKALDGEIEHAVERCFSLSV  342 (365)
Q Consensus       295 aGSMFW~Rp~AL~pL~dl~l~~~dFpeE~g~~DGTLaHAIERl~~~iv  342 (365)
                      .++--|+|-..                  ...+-.+..|++||--.+-
T Consensus       116 ~~~~~~iRi~f------------------a~~~e~l~eai~rL~~al~  145 (156)
T 3h14_A          116 ERGAGTLRFSY------------------ARATADIEEGLDRLEAFXQ  145 (156)
T ss_dssp             TTGGGEEEEEC------------------CSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEE------------------CCCHHHHHHHHHHHHHHHH
T ss_conf             88999899997------------------3999999999999999999


No 12 
>>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} (A:1-121,A:255-277)
Probab=34.98  E-value=30  Score=15.21  Aligned_cols=74  Identities=14%  Similarity=0.158  Sum_probs=47.8

Q ss_pred             CCCCCCCCCCCCEEEEE------EECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHH---CCCCEEEEECCC
Q ss_conf             78754312247559999------943677799999999818998318998086317999999852---588379994566
Q gi|254780923|r  106 MGKVMQIAIKAKIAIVV------HLYYIDLWIEIANLLSNLSISFDLHVTLVTESASIKSEILKI---FPAARIHIMENH  176 (365)
Q Consensus       106 ~~~~~~~~~k~KIAV~l------HlyY~DLl~Ei~~~L~~ip~~~DL~ITt~~~~~~~~~~i~~~---~~~~~I~vv~NR  176 (365)
                      ..+.........||+++      .-||.+++..+.+.+...  .+++.+..+....+.+.+..+.   ..---|.++++.
T Consensus        10 ~Ar~L~~~~s~~Igiiip~~~~~~~f~~~i~~gi~~~~~~~--gy~v~i~~~~~d~~~~~~~i~~l~~~~vDGiIi~~~~   87 (144)
T 3brq_A           10 LARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARXAEEK--GRQLLLADGKHSAEEERQAIQYLLDLRCDAIXIYPRF   87 (144)
T ss_dssp             ---------CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--TCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             99997418999799995886546879999999999999985--9999999689998999999998863465302440333


Q ss_pred             CCHHH
Q ss_conf             73178
Q gi|254780923|r  177 GRDVL  181 (365)
Q Consensus       177 GRDI~  181 (365)
                      -+|..
T Consensus        88 ~~~~~   92 (144)
T 3brq_A           88 LSVDE   92 (144)
T ss_dssp             SCHHH
T ss_pred             CCHHH
T ss_conf             21178


No 13 
>>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:1-78)
Probab=28.63  E-value=39  Score=14.56  Aligned_cols=59  Identities=19%  Similarity=0.091  Sum_probs=34.0

Q ss_pred             CEEEEEEECCHHHHHHHHHHHHHC-------------CCCCCEEEEECCCHHHHHHHHHHHC-CCCEEEEECCCCC
Q ss_conf             559999943677799999999818-------------9983189980863179999998525-8837999456673
Q gi|254780923|r  117 KIAIVVHLYYIDLWIEIANLLSNL-------------SISFDLHVTLVTESASIKSEILKIF-PAARIHIMENHGR  178 (365)
Q Consensus       117 KIAV~lHlyY~DLl~Ei~~~L~~i-------------p~~~DL~ITt~~~~~~~~~~i~~~~-~~~~I~vv~NRGR  178 (365)
                      ||+++.|-..++..+++.+.++..             +..+|+.||.= ..-.+ -...+.+ .++-|.-+ |.||
T Consensus         2 ki~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Dlvi~iG-GDGT~-L~a~~~~~~~~PvlGi-N~G~   74 (78)
T 1yt5_A            2 KIAILYREEREKEGEFLKEKISKEHEVIEFGEANAPGRVTADLIVVVG-GDGTV-LKAAKKAADGTPMVGF-KAGR   74 (78)
T ss_dssp             EEEEEECGGGHHHHHHHHHHHTTTSEEEEEEESSSCSCBCCSEEEEEE-CHHHH-HHHHTTBCTTCEEEEE-ESSS
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEEEC-CCHHH-HHHHHHHCCCCCEEEE-ECCC
T ss_conf             899998887467899999998876063223034745567878999989-85999-9999971779988976-0365


No 14 
>>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} (A:1-104,A:237-271)
Probab=27.86  E-value=40  Score=14.48  Aligned_cols=82  Identities=15%  Similarity=0.164  Sum_probs=49.7

Q ss_pred             CCCEEEEE----EECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHC--CCCEEEEECCCC-CHHHHHHHHH
Q ss_conf             47559999----9436777999999998189983189980863179999998525--883799945667-3178999750
Q gi|254780923|r  115 KAKIAIVV----HLYYIDLWIEIANLLSNLSISFDLHVTLVTESASIKSEILKIF--PAARIHIMENHG-RDVLPFLILL  187 (365)
Q Consensus       115 k~KIAV~l----HlyY~DLl~Ei~~~L~~ip~~~DL~ITt~~~~~~~~~~i~~~~--~~~~I~vv~NRG-RDI~PfLv~~  187 (365)
                      |.+||+++    +-||.++...+.+.++..  ++++.+..+....+.+.+..+.+  .+++-.++-+-+ ....|.+..+
T Consensus         1 K~tIgvi~~~~~~~f~~~i~~gi~~~a~~~--G~~l~i~~~~~~~~~~~~~i~~li~~~vdgiIi~~~~~~~~~~~l~~l   78 (139)
T 2dri_A            1 KDTIALVVSTLNNPFFVSLKDGAQKEADKL--GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA   78 (139)
T ss_dssp             CCEEEEEESCSSSHHHHHHHHHHHHHHHHH--TCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHH
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             988999928898989999999999999985--998999958999999999999998618764432122222316899999


Q ss_pred             CHHHHCCCCEEEEE
Q ss_conf             64452686889996
Q gi|254780923|r  188 ETEQLSNYDYVCKI  201 (365)
Q Consensus       188 ~~~~l~~YD~v~ki  201 (365)
                      .+.   +--+|+-=
T Consensus        79 ~~~---gIPvV~id   89 (139)
T 2dri_A           79 NQA---NIPVITLD   89 (139)
T ss_dssp             HHT---TCCEEEES
T ss_pred             HHC---CCCCCCCC
T ss_conf             863---77532356


No 15 
>>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus HB8} (A:371-496)
Probab=26.31  E-value=43  Score=14.31  Aligned_cols=80  Identities=11%  Similarity=0.150  Sum_probs=48.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHH--HCCCCEEEEECCCCCHHHHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHH
Q ss_conf             9831899808631799999985--25883799945667317899975064452686889996568676777773344789
Q gi|254780923|r  142 ISFDLHVTLVTESASIKSEILK--IFPAARIHIMENHGRDVLPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLW  219 (365)
Q Consensus       142 ~~~DL~ITt~~~~~~~~~~i~~--~~~~~~I~vv~NRGRDI~PfLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~W  219 (365)
                      ...|+||-......++...+.+  ..++.++..+-|||--|-|-  +.. +..---.+-|.+..+.....          
T Consensus        20 VGVDVfv~w~~~~~~L~~~l~~l~~~~~lkL~~IsnRGvkVWP~--~~~-et~~tDhwrCRF~~~~~~~i----------   86 (126)
T 2d1c_A           20 VGVDVFVETNLLPEALGKALEDLAAGTPFRLKMISNRGTQVYPP--TGG-LTDLVDHYRCRFLYTGEGEA----------   86 (126)
T ss_dssp             EEEEEEEECCSCHHHHHHHHHHHHTTSSEEEEEEEETTEEEESC--CSC-CCCCCSEEEEEEEECSSSCC----------
T ss_pred             EEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCEEECCC--CCC-CCCCCCCEEEEEEECCCCCC----------
T ss_conf             87689997599989999999850469980799993298678999--998-76555665888875798867----------


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf             9999987559999999999998628
Q gi|254780923|r  220 RRWLFYDLLGAPGVVFKIIRTFDTH  244 (365)
Q Consensus       220 R~~Ll~~LLGs~~~V~~Il~~F~~n  244 (365)
                                +...|.++|..++..
T Consensus        87 ----------~~~~I~~LL~~l~a~  101 (126)
T 2d1c_A           87 ----------KDPEILDLVSRVASR  101 (126)
T ss_dssp             ----------CHHHHHHHHHHHHTT
T ss_pred             ----------CHHHHHHHHHHHHCC
T ss_conf             ----------789999999999759


No 16 
>>1vkr_A Mannitol-specific PTS system enzyme iiabc components; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli O157} (A:)
Probab=24.03  E-value=47  Score=14.05  Aligned_cols=33  Identities=21%  Similarity=0.321  Sum_probs=16.1

Q ss_pred             HHCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             8189983189980863179999998525883799945
Q gi|254780923|r  138 SNLSISFDLHVTLVTESASIKSEILKIFPAARIHIME  174 (365)
Q Consensus       138 ~~ip~~~DL~ITt~~~~~~~~~~i~~~~~~~~I~vv~  174 (365)
                      ..++..+|++|||    ..+..++....+.+.|..+.
T Consensus        54 ~~~~~~~DlIitt----~~l~~~~~~~~~~~~vi~v~   86 (125)
T 1vkr_A           54 NNLPPDVDLVITH----RDLTERAMRQVPQAQHISLT   86 (125)
T ss_dssp             TCCCTTCSEEEEE----HHHHHHHHHHCTTSEEEEES
T ss_pred             HCCCCCCCEEEEC----HHHHHHHHHCCCCCEEEEEE
T ss_conf             2178898799988----78889998229998399982


No 17 
>>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5'-triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} (A:1-269)
Probab=20.60  E-value=55  Score=13.63  Aligned_cols=52  Identities=19%  Similarity=0.185  Sum_probs=29.4

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCHHH-----HHHHHHCHHHHC-CCCEEEEECCCCCCC
Q ss_conf             99999985258837999456673178-----999750644526-868899965686767
Q gi|254780923|r  156 SIKSEILKIFPAARIHIMENHGRDVL-----PFLILLETEQLS-NYDYVCKIHGKKSKR  208 (365)
Q Consensus       156 ~~~~~i~~~~~~~~I~vv~NRGRDI~-----PfLv~~~~~~l~-~YD~v~kiHTKKS~~  208 (365)
                      +++..+.+.....+|.++| .|=-|+     |||.+.+....+ +.+-+|.+|.-=-|.
T Consensus       122 eIk~~I~~~a~~~Di~ivE-IGGTVGDIES~pFlEAirQl~~~~g~~n~~~iHvtlvPy  179 (269)
T 1s1m_A          122 AIKERVLEGGEGHDVVLVE-IGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPY  179 (269)
T ss_dssp             HHHHHHHHHHTTCSEEEEE-ECSCTTSSTTHHHHHHHHHHHHHHCTTSEEEEEEEECCE
T ss_pred             HHHHHHHHCCCCCCEEEEE-CCCHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             9999997046778679997-132044553064999999998760887689995124443


No 18 
>>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription regulator; 2.30A {Thermococcus kodakarensis KOD1} (A:14-95)
Probab=20.51  E-value=55  Score=13.62  Aligned_cols=16  Identities=19%  Similarity=0.162  Sum_probs=9.1

Q ss_pred             HHHCCCCEEEEECCCC
Q ss_conf             8525883799945667
Q gi|254780923|r  162 LKIFPAARIHIMENHG  177 (365)
Q Consensus       162 ~~~~~~~~I~vv~NRG  177 (365)
                      .+.-+...|.+|||.|
T Consensus        53 ~k~~~Gi~i~vvP~kg   68 (82)
T 2czr_A           53 GKDVNGIHIVAIPDNG   68 (82)
T ss_dssp             SCCCSSEEEEEESCTT
T ss_pred             CCCCCCEEEEEECCCC
T ss_conf             0557981899977997


Done!