RPSBLAST alignment for GI: 254780923 and conserved domain: pfam05045
>gnl|CDD|113802 pfam05045, RgpF, Rhamnan synthesis protein F. This family consists of a group of proteins which are related to the Streptococcus rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O polysaccharides of phytopathogenic bacteria and are regarded as pathogenic factors. Length = 498
Score = 117 bits (294), Expect = 6e-27
Identities = 74/230 (32%), Positives = 112/230 (48%), Gaps = 18/230 (7%)
Query: 117 KIAIVVHLYYIDLWIEIANLLSNLSISFDLHVTLVTE--SASIKSEILKIFPA--ARIHI 172
KIA+ H+YY+D+ EI N+ S+DL +T T+ A I+ + K A A + +
Sbjct: 266 KIAVHAHVYYVDMLDEILTAFKNIPFSYDLIITTDTDDKKAEIEEILAKRKGAKNAIVRV 325
Query: 173 MENHGRDVLPFLILLETEQLSN-YDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAP 231
++N GRD+ P LI L+ E + + YD VC+ H KKS + +W G+ ++ L +LL
Sbjct: 326 VQNRGRDMSPLLISLKDELVDDRYDLVCRFHTKKSPQA--DFWAGESFKEELIDNLLKPR 383
Query: 232 GVVFKIIRTFDTHRDIGMIGSRA--YRYPNKYCDYTCSLGKNREMICTLAGRMGITFQDQ 289
G I+ F+ + IG++ RYP + +N + LA RMGI +
Sbjct: 384 GYADNILAMFEQNPSIGLVIPDIVHIRYPT----IGNAWNENAPEMNKLARRMGIKKKFD 439
Query: 290 KLDFFA--GTMFWVRTEALDPIKNLRLS-RYFEPKVHKALDGEIEHAVER 336
A GTMFW R EAL + L F + D + HA+ER
Sbjct: 440 DNTPVASYGTMFWFRPEALKKLFELEWKWEDFPNEPLP--DNSLLHAIER 487