RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780923|ref|YP_003065336.1| hypothetical protein CLIBASIA_04110 [Candidatus Liberibacter asiaticus str. psy62] (365 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 39.5 bits (92), Expect = 0.001 Identities = 39/181 (21%), Positives = 54/181 (29%), Gaps = 85/181 (46%) Query: 124 LY--Y----IDLWIEIANLLSNLSISFDLHVTLVTESASIKSEILKIFPAARIHIMENHG 177 LY Y DL A LS L + T A K+F G Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRT--------TLDAE------KVFT---------QG 212 Query: 178 RDVL---------P---FLI----------LLETEQLSNYDYVCKIHGKKSKRKGYSWWE 215 ++L P +L+ ++ QL++Y K+ G Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVI---QLAHYVVTAKLLGFTP--------- 260 Query: 216 GDLWRRWLFYDLLGAPG-----VVFKIIRTFDT--------HRDIGM---IGSRAYR-YP 258 G+L L GA G V I D+ + I + IG R Y YP Sbjct: 261 GELRSY-----LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315 Query: 259 N 259 N Sbjct: 316 N 316 Score = 39.2 bits (91), Expect = 0.001 Identities = 50/316 (15%), Positives = 80/316 (25%), Gaps = 141/316 (44%) Query: 131 IEIANLLSNLSISFDLHVTLVTESASI-------KSEILKIFPAARI------------- 170 E L N D+H L + E++K + ARI Sbjct: 91 FENCYLEGN-----DIH-ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144 Query: 171 ---HIMENHGR---------------DVL--------PF---LILLETEQL----SNYDY 197 + E + + + L LI E L Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204 Query: 198 VCKIHGKKSKRKGYSWWEG-DLWRRWLF---------YDLLGAPGVVFKIIRTFDTHRDI 247 K+ + G ++ WL Y LL P + + I Sbjct: 205 AEKVFTQ-----------GLNI-LEWLENPSNTPDKDY-LLSIP-ISCPL---------I 241 Query: 248 GMIGSRAYRYPNKYCDY--TC-SLGKN----REMICTLAGR-MGI-------------TF 286 G+I + Y T LG R + G G+ +F Sbjct: 242 GVI---------QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292 Query: 287 QDQKLDFFAGTM-FWVRTEALD--PIKNLRLSRYFEPKVHKALDGEIEHAVERCFS--LS 341 A T+ F++ + P +L S L+ +E+ E S LS Sbjct: 293 FVSVRK--AITVLFFIGVRCYEAYPNTSLPPS---------ILEDSLENN-EGVPSPMLS 340 Query: 342 VKKANFRISDVDCILG 357 + N V + Sbjct: 341 IS--NLTQEQVQDYVN 354 Score = 28.0 bits (62), Expect = 3.2 Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 95/215 (44%) Query: 43 WTLFYKRSKK----LCYDENYVVAYGSRSGKKFFAQSNL-----------------YM-- 79 W F+ +K L + G R + + ++L M Sbjct: 289 WESFFVSVRKAITVLFF-------IGVRC-YEAYPNTSLPPSILEDSLENNEGVPSPMLS 340 Query: 80 ---MERE-L--HFDGQRIHHFPQLLHGWESPAMGKVMQIAIKAKI----AIVV-----HL 124 + +E + + + + H P Q+ I + + +VV L Sbjct: 341 ISNLTQEQVQDYVN-KTNSHLPA-----GK-------QVEI-SLVNGAKNLVVSGPPQSL 386 Query: 125 YYIDLWI-EI---ANL-------------LSN--LSISFDLH------VT------LVTE 153 Y ++L + + + L SN L ++ H + LV Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446 Query: 154 SASIKSEILKIFPAARIHI---MENHGRDVLPFLI 185 + S ++ ++I P + + ++ Sbjct: 447 NVSFNAKDIQI-PVYDTFDGSDLRVLSGSISERIV 480 Score = 26.8 bits (59), Expect = 8.9 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 26/104 (25%) Query: 268 LGK-NREMICTLAGRMGITFQDQKLDFF---AGTMFWVRTEALDPIKNLRL--SRYFEPK 321 LG+ N MI GR+ +F + L + G RT L I N + +Y Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEALQYVVERVGK----RTGWLVEIVNYNVENQQYVAAG 1857 Query: 322 VHKALDGEIEHAVERCFSLSVKKA-NF-RISDVDCILGYRKSLS 363 +ALD +V NF ++ +D I+ +KSLS Sbjct: 1858 DLRALD-------------TVTNVLNFIKLQKID-IIELQKSLS 1887 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 34.2 bits (77), Expect = 0.050 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 28/51 (54%) Query: 69 KKFFAQSNLYMMERELHFDGQRIHHFPQLLHGWES-PAMGKVMQIAIKAKI 118 KK Q++L +L+ D +S PA+ AIKA + Sbjct: 23 KKL--QASL-----KLYAD--------------DSAPAL------AIKATM 46 >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure- function studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 Length = 377 Score = 26.7 bits (58), Expect = 7.8 Identities = 21/151 (13%), Positives = 46/151 (30%), Gaps = 28/151 (18%) Query: 2 PVSGCSKGYFLFTSHFKSWNFYSDHFNIEKVNLWGGFFFWFWTLFYKRSKKLCYDENYVV 61 P G S L +++ + F + + +F E+Y+ Sbjct: 223 PDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQV------------ESYLS 270 Query: 62 AYGSRSGKKFFAQSNLYMMERELHFDGQRIHHFPQLLHGWESPAMGKVMQIAIKAKIAIV 121 G + ++F A S L+++ +D + + + IKA+ +V Sbjct: 271 YQGKKFLERFDANSYLHLLRALDMYD-----------PSLGYENVKEALS-RIKARYTLV 318 Query: 122 V----HLYYIDLWIEIANLLSNLSISFDLHV 148 L+ + LL + + Sbjct: 319 SVTTDQLFKPIDLYKSKQLLEQSGVDLHFYE 349 >1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein structure initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Length = 268 Score = 26.6 bits (57), Expect = 8.3 Identities = 21/151 (13%), Positives = 40/151 (26%), Gaps = 4/151 (2%) Query: 1 MPVSGCSKGYFLFTSHFKSWNFYSDHFNIEKVNLWGGFFFWFWTLFYK-RSKKLCYDENY 59 +P+ G + F S + +N E+ G F F + + Sbjct: 112 LPIYGHTFDENGFHSLTHEPHTKGIPYNPEETLQIGPFSISFLKTVHPVTCFAMRITAGN 171 Query: 60 VVAYGSRSGKKFFAQSNLYMMERELHFDGQRIHHFPQLLHGWESPAMGKVMQIAIKAKIA 119 + S + H G + + K Sbjct: 172 DIVVYSADSSYIPEFIPFTKDADLFICECNMYAHQEAAKAGHMNSTEVASIAKDANVKEL 231 Query: 120 IVVHLYYIDLWIEIANLLSNLSISFDLHVTL 150 ++ HL + A+L++ F H+TL Sbjct: 232 LLTHLPH---TGNPADLVTEAKQIFSGHITL 259 >2a55_A C4B-binding protein; complement, SCR, CCP module, immune system; NMR {Homo sapiens} Length = 133 Score = 26.5 bits (57), Expect = 8.6 Identities = 6/63 (9%), Positives = 12/63 (19%) Query: 6 CSKGYFLFTSHFKSWNFYSDHFNIEKVNLWGGFFFWFWTLFYKRSKKLCYDENYVVAYGS 65 C GY S + ++ + K + + Sbjct: 34 CLPGYVRSHSTQTLTCNSDGEWVYNTFCIYKRCRHPGELRNGQVEIKTDLSFGSQIEFSC 93 Query: 66 RSG 68 G Sbjct: 94 SEG 96 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.327 0.141 0.458 Gapped Lambda K H 0.267 0.0382 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,464,568 Number of extensions: 165975 Number of successful extensions: 555 Number of sequences better than 10.0: 1 Number of HSP's gapped: 552 Number of HSP's successfully gapped: 15 Length of query: 365 Length of database: 5,693,230 Length adjustment: 94 Effective length of query: 271 Effective length of database: 3,414,294 Effective search space: 925273674 Effective search space used: 925273674 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 57 (26.7 bits)