RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780923|ref|YP_003065336.1| hypothetical protein
CLIBASIA_04110 [Candidatus Liberibacter asiaticus str. psy62]
(365 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 39.5 bits (92), Expect = 0.001
Identities = 39/181 (21%), Positives = 54/181 (29%), Gaps = 85/181 (46%)
Query: 124 LY--Y----IDLWIEIANLLSNLSISFDLHVTLVTESASIKSEILKIFPAARIHIMENHG 177
LY Y DL A LS L + T A K+F G
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRT--------TLDAE------KVFT---------QG 212
Query: 178 RDVL---------P---FLI----------LLETEQLSNYDYVCKIHGKKSKRKGYSWWE 215
++L P +L+ ++ QL++Y K+ G
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVI---QLAHYVVTAKLLGFTP--------- 260
Query: 216 GDLWRRWLFYDLLGAPG-----VVFKIIRTFDT--------HRDIGM---IGSRAYR-YP 258
G+L L GA G V I D+ + I + IG R Y YP
Sbjct: 261 GELRSY-----LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 259 N 259
N
Sbjct: 316 N 316
Score = 39.2 bits (91), Expect = 0.001
Identities = 50/316 (15%), Positives = 80/316 (25%), Gaps = 141/316 (44%)
Query: 131 IEIANLLSNLSISFDLHVTLVTESASI-------KSEILKIFPAARI------------- 170
E L N D+H L + E++K + ARI
Sbjct: 91 FENCYLEGN-----DIH-ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 171 ---HIMENHGR---------------DVL--------PF---LILLETEQL----SNYDY 197
+ E + + + L LI E L
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 198 VCKIHGKKSKRKGYSWWEG-DLWRRWLF---------YDLLGAPGVVFKIIRTFDTHRDI 247
K+ + G ++ WL Y LL P + + I
Sbjct: 205 AEKVFTQ-----------GLNI-LEWLENPSNTPDKDY-LLSIP-ISCPL---------I 241
Query: 248 GMIGSRAYRYPNKYCDY--TC-SLGKN----REMICTLAGR-MGI-------------TF 286
G+I + Y T LG R + G G+ +F
Sbjct: 242 GVI---------QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 287 QDQKLDFFAGTM-FWVRTEALD--PIKNLRLSRYFEPKVHKALDGEIEHAVERCFS--LS 341
A T+ F++ + P +L S L+ +E+ E S LS
Sbjct: 293 FVSVRK--AITVLFFIGVRCYEAYPNTSLPPS---------ILEDSLENN-EGVPSPMLS 340
Query: 342 VKKANFRISDVDCILG 357
+ N V +
Sbjct: 341 IS--NLTQEQVQDYVN 354
Score = 28.0 bits (62), Expect = 3.2
Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 95/215 (44%)
Query: 43 WTLFYKRSKK----LCYDENYVVAYGSRSGKKFFAQSNL-----------------YM-- 79
W F+ +K L + G R + + ++L M
Sbjct: 289 WESFFVSVRKAITVLFF-------IGVRC-YEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 80 ---MERE-L--HFDGQRIHHFPQLLHGWESPAMGKVMQIAIKAKI----AIVV-----HL 124
+ +E + + + + H P Q+ I + + +VV L
Sbjct: 341 ISNLTQEQVQDYVN-KTNSHLPA-----GK-------QVEI-SLVNGAKNLVVSGPPQSL 386
Query: 125 YYIDLWI-EI---ANL-------------LSN--LSISFDLH------VT------LVTE 153
Y ++L + + + L SN L ++ H + LV
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 154 SASIKSEILKIFPAARIHI---MENHGRDVLPFLI 185
+ S ++ ++I P + + ++
Sbjct: 447 NVSFNAKDIQI-PVYDTFDGSDLRVLSGSISERIV 480
Score = 26.8 bits (59), Expect = 8.9
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 26/104 (25%)
Query: 268 LGK-NREMICTLAGRMGITFQDQKLDFF---AGTMFWVRTEALDPIKNLRL--SRYFEPK 321
LG+ N MI GR+ +F + L + G RT L I N + +Y
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEALQYVVERVGK----RTGWLVEIVNYNVENQQYVAAG 1857
Query: 322 VHKALDGEIEHAVERCFSLSVKKA-NF-RISDVDCILGYRKSLS 363
+ALD +V NF ++ +D I+ +KSLS
Sbjct: 1858 DLRALD-------------TVTNVLNFIKLQKID-IIELQKSLS 1887
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.050
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 28/51 (54%)
Query: 69 KKFFAQSNLYMMERELHFDGQRIHHFPQLLHGWES-PAMGKVMQIAIKAKI 118
KK Q++L +L+ D +S PA+ AIKA +
Sbjct: 23 KKL--QASL-----KLYAD--------------DSAPAL------AIKATM 46
>2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway,
coenzyme A, structure- function studies, alpha-beta
hydrolase fold; 1.65A {Haemophilus influenzae} SCOP:
c.69.1.40
Length = 377
Score = 26.7 bits (58), Expect = 7.8
Identities = 21/151 (13%), Positives = 46/151 (30%), Gaps = 28/151 (18%)
Query: 2 PVSGCSKGYFLFTSHFKSWNFYSDHFNIEKVNLWGGFFFWFWTLFYKRSKKLCYDENYVV 61
P G S L +++ + F + + +F E+Y+
Sbjct: 223 PDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQV------------ESYLS 270
Query: 62 AYGSRSGKKFFAQSNLYMMERELHFDGQRIHHFPQLLHGWESPAMGKVMQIAIKAKIAIV 121
G + ++F A S L+++ +D + + + IKA+ +V
Sbjct: 271 YQGKKFLERFDANSYLHLLRALDMYD-----------PSLGYENVKEALS-RIKARYTLV 318
Query: 122 V----HLYYIDLWIEIANLLSNLSISFDLHV 148
L+ + LL + +
Sbjct: 319 SVTTDQLFKPIDLYKSKQLLEQSGVDLHFYE 349
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural
genomics, PSI, protein structure initiative; 1.50A
{Bacillus anthracis str} SCOP: d.157.1.9
Length = 268
Score = 26.6 bits (57), Expect = 8.3
Identities = 21/151 (13%), Positives = 40/151 (26%), Gaps = 4/151 (2%)
Query: 1 MPVSGCSKGYFLFTSHFKSWNFYSDHFNIEKVNLWGGFFFWFWTLFYK-RSKKLCYDENY 59
+P+ G + F S + +N E+ G F F + +
Sbjct: 112 LPIYGHTFDENGFHSLTHEPHTKGIPYNPEETLQIGPFSISFLKTVHPVTCFAMRITAGN 171
Query: 60 VVAYGSRSGKKFFAQSNLYMMERELHFDGQRIHHFPQLLHGWESPAMGKVMQIAIKAKIA 119
+ S + H G + + K
Sbjct: 172 DIVVYSADSSYIPEFIPFTKDADLFICECNMYAHQEAAKAGHMNSTEVASIAKDANVKEL 231
Query: 120 IVVHLYYIDLWIEIANLLSNLSISFDLHVTL 150
++ HL + A+L++ F H+TL
Sbjct: 232 LLTHLPH---TGNPADLVTEAKQIFSGHITL 259
>2a55_A C4B-binding protein; complement, SCR, CCP module, immune system;
NMR {Homo sapiens}
Length = 133
Score = 26.5 bits (57), Expect = 8.6
Identities = 6/63 (9%), Positives = 12/63 (19%)
Query: 6 CSKGYFLFTSHFKSWNFYSDHFNIEKVNLWGGFFFWFWTLFYKRSKKLCYDENYVVAYGS 65
C GY S + ++ + K + +
Sbjct: 34 CLPGYVRSHSTQTLTCNSDGEWVYNTFCIYKRCRHPGELRNGQVEIKTDLSFGSQIEFSC 93
Query: 66 RSG 68
G
Sbjct: 94 SEG 96
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.327 0.141 0.458
Gapped
Lambda K H
0.267 0.0382 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,464,568
Number of extensions: 165975
Number of successful extensions: 555
Number of sequences better than 10.0: 1
Number of HSP's gapped: 552
Number of HSP's successfully gapped: 15
Length of query: 365
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 271
Effective length of database: 3,414,294
Effective search space: 925273674
Effective search space used: 925273674
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.7 bits)