BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780923|ref|YP_003065336.1| hypothetical protein
CLIBASIA_04110 [Candidatus Liberibacter asiaticus str. psy62]
         (365 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780923|ref|YP_003065336.1| hypothetical protein CLIBASIA_04110 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 365

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/365 (100%), Positives = 365/365 (100%)

Query: 1   MPVSGCSKGYFLFTSHFKSWNFYSDHFNIEKVNLWGGFFFWFWTLFYKRSKKLCYDENYV 60
           MPVSGCSKGYFLFTSHFKSWNFYSDHFNIEKVNLWGGFFFWFWTLFYKRSKKLCYDENYV
Sbjct: 1   MPVSGCSKGYFLFTSHFKSWNFYSDHFNIEKVNLWGGFFFWFWTLFYKRSKKLCYDENYV 60

Query: 61  VAYGSRSGKKFFAQSNLYMMERELHFDGQRIHHFPQLLHGWESPAMGKVMQIAIKAKIAI 120
           VAYGSRSGKKFFAQSNLYMMERELHFDGQRIHHFPQLLHGWESPAMGKVMQIAIKAKIAI
Sbjct: 61  VAYGSRSGKKFFAQSNLYMMERELHFDGQRIHHFPQLLHGWESPAMGKVMQIAIKAKIAI 120

Query: 121 VVHLYYIDLWIEIANLLSNLSISFDLHVTLVTESASIKSEILKIFPAARIHIMENHGRDV 180
           VVHLYYIDLWIEIANLLSNLSISFDLHVTLVTESASIKSEILKIFPAARIHIMENHGRDV
Sbjct: 121 VVHLYYIDLWIEIANLLSNLSISFDLHVTLVTESASIKSEILKIFPAARIHIMENHGRDV 180

Query: 181 LPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRT 240
           LPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRT
Sbjct: 181 LPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRT 240

Query: 241 FDTHRDIGMIGSRAYRYPNKYCDYTCSLGKNREMICTLAGRMGITFQDQKLDFFAGTMFW 300
           FDTHRDIGMIGSRAYRYPNKYCDYTCSLGKNREMICTLAGRMGITFQDQKLDFFAGTMFW
Sbjct: 241 FDTHRDIGMIGSRAYRYPNKYCDYTCSLGKNREMICTLAGRMGITFQDQKLDFFAGTMFW 300

Query: 301 VRTEALDPIKNLRLSRYFEPKVHKALDGEIEHAVERCFSLSVKKANFRISDVDCILGYRK 360
           VRTEALDPIKNLRLSRYFEPKVHKALDGEIEHAVERCFSLSVKKANFRISDVDCILGYRK
Sbjct: 301 VRTEALDPIKNLRLSRYFEPKVHKALDGEIEHAVERCFSLSVKKANFRISDVDCILGYRK 360

Query: 361 SLSQN 365
           SLSQN
Sbjct: 361 SLSQN 365


>gi|254780201|ref|YP_003064614.1| hypothetical protein CLIBASIA_00430 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 394

 Score =  268 bits (686), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 146/356 (41%), Positives = 212/356 (59%), Gaps = 4/356 (1%)

Query: 9   GYFLFTSHFKSWNFYSDHFNIEKVNLWGGFFFWFWT-LFYKRSKKLCYDENYVVAYGSRS 67
           GY++  S        S   + ++++++  F FW  + L + +  KL +    +  YGSR 
Sbjct: 40  GYYVLWSFSPKQRITSKDVHFQELSIFESFIFWLRSFLAFSKYSKLSFPSCRIFFYGSRK 99

Query: 68  GKKFFAQSNLYMMERELHFDGQRIHHFPQLLHGW-ESPAMGKVMQIAIKAKIAIVVHLYY 126
            +K F + N +M    + FD ++  +  +L  GW + P+  K   + IK+KIAIVVH YY
Sbjct: 100 EQKAFLRLNRFMSNSRMPFDSEKFLYVKELFEGWNDRPSSPKKSGLTIKSKIAIVVHCYY 159

Query: 127 IDLWIEIANLLSNLSISFDLHVTLVTESASIKSEILKIFPAARIHIMENHGRDVLPFLIL 186
            D WIEI+++L  L+  FDL VT+V  +   + ++LK FP+A++++MEN GRDV PFL L
Sbjct: 160 QDTWIEISHILLRLNFDFDLFVTVVEANKDFEQDVLKYFPSAQLYVMENKGRDVRPFLYL 219

Query: 187 LETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRD 246
           LE      YDY+CKIHGKKS+R+GY   EG +WRRWLF+DLLG   +  +II TF+ +  
Sbjct: 220 LELGVFDRYDYLCKIHGKKSQREGYHPIEGIIWRRWLFFDLLGFSDIAIRIINTFEQNPC 279

Query: 247 IGMIGSRAYRYPNKYCDYTCSLGKNREMICTLAGRMGITFQDQKLDFFAGTMFWVRTEAL 306
           +GMIGSR YR   ++  +       R +I  LA R G   +   LDFF GTMFWV+ + L
Sbjct: 280 LGMIGSRRYRRYKRWSFFAKRSEVYRRVI-DLAKRAGFPTKRLHLDFFNGTMFWVKPKCL 338

Query: 307 DPIKNLRLSRYFEPKVHKALDGEIEHAVERCFSLSVKKANFRISDVDCILGYRKSL 362
           +P++NL L   FE +     DG +EHAVER F+ SV+   F I  VDC+  Y + L
Sbjct: 339 EPLRNLHLIGEFEEE-RNLKDGALEHAVERFFACSVRYTEFSIESVDCVAEYERLL 393


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.327    0.141    0.458 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 249,894
Number of Sequences: 1233
Number of extensions: 10415
Number of successful extensions: 29
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 2
length of query: 365
length of database: 328,796
effective HSP length: 75
effective length of query: 290
effective length of database: 236,321
effective search space: 68533090
effective search space used: 68533090
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 39 (19.6 bits)