HHsearch alignment for GI: 254780924 and conserved domain: COG1255
>COG1255 Uncharacterized protein conserved in archaea [Function unknown].
Probab=95.74 E-value=0.081 Score=29.36 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=74.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHH
Q ss_conf 78179973774899999999847990899719989999999769929997899989998489314679999359968999
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAA 527 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~ 527 (609)
T Consensus 14 ~gkVvEVGiG~~-~~VA~~L~e~g~dv~atDI~~~~a---~-~g~~~v~DDitnP~~~i---Y~~A~lIYSiRpppEl~~ 85 (129)
T COG1255 14 RGKVVEVGIGFF-LDVAKRLAERGFDVLATDINEKTA---P-EGLRFVVDDITNPNISI---YEGADLIYSIRPPPELQS 85 (129)
T ss_pred CCCEEEECCCHH-HHHHHHHHHCCCCEEEEECCCCCC---C-CCCEEEECCCCCCCHHH---HHCCCCEEECCCCHHHHH
T ss_conf 883799814117-999999997488689985230137---6-55338872477964777---627001266279889989
Q ss_pred HHHHHHHHHCCCCEEEEEECCH
Q ss_conf 9999999958988089994698
Q gi|254780924|r 528 YITQEARNSNPSILIIALADSD 549 (609)
Q Consensus 528 ~~~~~~~~~~~~~~iia~~~~~ 549 (609)
T Consensus 86 ~ildva~aVga~l~I~pL~Ge~ 107 (129)
T COG1255 86 AILDVAKAVGAPLYIKPLTGEP 107 (129)
T ss_pred HHHHHHHHHCCCEEEEECCCCC
T ss_conf 9999998609978997168997