HHsearch alignment for GI: 254780924 and conserved domain: COG3004
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism].
Probab=97.61 E-value=0.0043 Score=38.13 Aligned_cols=224 Identities=14% Similarity=0.111 Sum_probs=106.9
Q ss_pred HHHHHHHHHHCCCHHHHHHH---C-CHHH--HHHHHHHHHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999882541688999841---5-1588--9989999999999999999-----9678868999999999742389999
Q gi|254780924|r 58 IILLMFGVGLHFSVKDLISV---R-GIAL--PGALIQIILGTALGALMGM-----VMGWSLGGSVVFGLALSIASTVVLL 126 (609)
Q Consensus 58 l~~llF~~Gleld~~~l~~~---~-~~~~--~~~~~~~~~~~~~~~~~~~-----~lg~~~~~all~g~~l~~ts~~vv~ 126 (609)
T Consensus 71 MAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAliy~~~n~~~p~~~~GWaIP~---------ATDiAFAL 141 (390)
T COG3004 71 MAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALIYLALNAGDPATLEGWAIPM---------ATDIAFAL 141 (390)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHEEECCCHHHHCCCCCCC---------HHHHHHHH
T ss_conf 999999999999999971600370454557899861641555664103259846624767650---------78899999
Q ss_pred HHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 876565-5411440578989987777899999999998613444330135678999988765321014799999998410
Q gi|254780924|r 127 KALQEN-RILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVV 205 (609)
Q Consensus 127 ~~l~~~-~~~~~~~g~~~~~~~~~~Di~~i~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (609)
T Consensus 142 GvlaLLG~rVP~sLKiFLlaLAI~DDLGAIvIIAlF---Yt~~L-s~~a--------------------------l~~a~ 191 (390)
T COG3004 142 GVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALF---YTTDL-SMAA--------------------------LGIAA 191 (390)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE---ECCCC-CHHH--------------------------HHHHH
T ss_conf 999995377970599999999998315512798640---07886-6999--------------------------99999
Q ss_pred CCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCHHHHHHH
Q ss_conf 100001000344543877642035673689999999999999988874110024666664222027-----614568999
Q gi|254780924|r 206 AFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLAIALGFAYGSSKLFGVSLSLGAFFAGMILAE-----SELSQSAAQ 280 (609)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~-----~~~~~~~~~ 280 (609)
T Consensus 192 ~~i~vL~~lN~~--------~i~~l~~Y--~~~gviL-----W~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh 256 (390)
T COG3004 192 LAIAVLAVLNRL--------GVRRLSPY--LLVGVIL-----WIAVLKSGVHATLAGVILAFFIPLKTKEGESPLERLEH 256 (390)
T ss_pred HHHHHHHHHHHH--------CCHHHHHH--HHHHHHH-----HHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHH
T ss_conf 999999999883--------65011299--9999999-----99999722079999889970653147778895899998
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 997668999999998865311479886---2025677776555422122321100025
Q gi|254780924|r 281 ESLPLRDAFSVLFFISVGMMFNPDILI---SNPILLMMAVIIVIIGKALIAFIVVIAF 335 (609)
Q Consensus 281 ~~~~~~~~~~~~fFv~iG~~l~~~~l~---~~~~~~l~~~~~~~~~k~~~~~~~~~~~ 335 (609)
T Consensus 257 ~L~pwvaf~IlPlFaFaNAGvsl~g~~~~~l~s~l~lgI~lGL~~GKplGIf~fs~lA 314 (390)
T COG3004 257 ALHPWVAFFILPLFAFANAGVSLQGVSLSGLTSPLTLGIILGLFLGKPLGIFLFSWLA 314 (390)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 7531288999999987257863025554221111499999999835722103338999