HHsearch alignment for GI: 254780924 and conserved domain: COG3180

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only].
Probab=94.75  E-value=0.25  Score=25.94  Aligned_cols=106  Identities=21%  Similarity=0.231  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC--HHHH-HHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH---HH
Q ss_conf             7999999999999999870888--6799-9999996274103855847899999999999999882541688999---84
Q gi|254780924|r    3 TIIWGFVLAFIFGAIANRCRLP--TLIG-YLVAGILVGPRTPGFVASQSLVPALAEIGIILLMFGVGLHFSVKDL---IS   76 (609)
Q Consensus         3 ~l~~~l~~a~i~g~la~rl~lP--~i~~-~il~GillGp~~l~~i~~~~~l~~l~~lgl~~llF~~Gleld~~~l---~~   76 (609)
T Consensus        10 ~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~l~~P----~~l~~~~q~ilG~~ig~~~t~s~l~~l~~   85 (352)
T COG3180          10 QWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLTLPLP----RGLFKAGQVILGIMIGASLTPSVLDTLKS   85 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC----HHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             99999999999999999863778999888999999997436645687----69999999999998731068889999997


Q ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             151588998999999999999999996788689999
Q gi|254780924|r   77 VRGIALPGALIQIILGTALGALMGMVMGWSLGGSVV  112 (609)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~all  112 (609)
T Consensus        86 ~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~~  121 (352)
T COG3180          86 NWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAFL  121 (352)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             140899999999999999999999954899621357