HHsearch alignment for GI: 254780924 and conserved domain: COG3180
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only].
Probab=94.75 E-value=0.25 Score=25.94 Aligned_cols=106 Identities=21% Similarity=0.231 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC--HHHH-HHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH---HH
Q ss_conf 7999999999999999870888--6799-9999996274103855847899999999999999882541688999---84
Q gi|254780924|r 3 TIIWGFVLAFIFGAIANRCRLP--TLIG-YLVAGILVGPRTPGFVASQSLVPALAEIGIILLMFGVGLHFSVKDL---IS 76 (609)
Q Consensus 3 ~l~~~l~~a~i~g~la~rl~lP--~i~~-~il~GillGp~~l~~i~~~~~l~~l~~lgl~~llF~~Gleld~~~l---~~ 76 (609)
T Consensus 10 ~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~l~~P----~~l~~~~q~ilG~~ig~~~t~s~l~~l~~ 85 (352)
T COG3180 10 QWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLTLPLP----RGLFKAGQVILGIMIGASLTPSVLDTLKS 85 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC----HHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99999999999999999863778999888999999997436645687----69999999999998731068889999997
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 151588998999999999999999996788689999
Q gi|254780924|r 77 VRGIALPGALIQIILGTALGALMGMVMGWSLGGSVV 112 (609)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~all 112 (609)
T Consensus 86 ~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~~ 121 (352)
T COG3180 86 NWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAFL 121 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 140899999999999999999999954899621357