HHsearch alignment for GI: 254780924 and conserved domain: PRK09560
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed.
Probab=98.30 E-value=0.00012 Score=48.97 Aligned_cols=295 Identities=13% Similarity=0.101 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHH----HHCCHHH--HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHH
Q ss_conf 99999999999998825416889998----4151588--99899999999999999999678868999999-99974238
Q gi|254780924|r 50 VPALAEIGIILLMFGVGLHFSVKDLI----SVRGIAL--PGALIQIILGTALGALMGMVMGWSLGGSVVFG-LALSIAST 122 (609)
Q Consensus 50 l~~l~~lgl~~llF~~Gleld~~~l~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~lg~~~~~all~g-~~l~~ts~ 122 (609)
T Consensus 52 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lPi~AA~GGm~~PAlIY~~~n----~~~~~~~-~GW~IP~ATDI 126 (382)
T PRK09560 52 SHWINDGLMAVFFLLIGLEVKRELLEGALKSKETAIFPAIAAVGGMLAPALIYVAFN----FNDPEAI-SGWAIPAATDI 126 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHEEE----CCCCCCC-CCCCCCCHHHH
T ss_conf 999977899999999999999998548679878888889999804409888881131----5883102-65132460179
Q ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999876565541-144057898998777789999999999861344433013567899998876532101479999999
Q gi|254780924|r 123 VVLLKALQENRIL-ETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITL 201 (609)
Q Consensus 123 ~vv~~~l~~~~~~-~~~~g~~~~~~~~~~Di~~i~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (609)
T Consensus 127 AFalgvlallg~rvP~~lr~FLlaLAIvDDlgaI~VIA~FY---t~~i~-~~----------------------~L~~a~ 180 (382)
T PRK09560 127 AFALGIMALLGKRVPVSLKVFLLALAIIDDLGVVVIIALFY---SSDLS-TL----------------------ALTVGF 180 (382)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEC---CCCCC-HH----------------------HHHHHH
T ss_conf 99999999965768879999999999986200215888750---89877-99----------------------999999
Q ss_pred HHHCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CHH
Q ss_conf 84101000010003445438776420356736899999999999999888741100246666642220276------145
Q gi|254780924|r 202 LKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLAIALGFAYGSSKLFGVSLSLGAFFAGMILAES------ELS 275 (609)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~~------~~~ 275 (609)
T Consensus 181 ~~----~~~l~---------~l~~~-~v~~~~~y~~~G~~l-----W~~~~~SGiHaTiAGV~la~~iP~~~~~~~~spl 241 (382)
T PRK09560 181 AM----TGVLF---------MLNAK-HVTKLSWYLIVGFIL-----WVAVLKSGVHATLAGVVIGFAIPLKGKKGEHSPL 241 (382)
T ss_pred HH----HHHHH---------HHHHC-CCCCHHHHHHHHHHH-----HHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 99----99999---------99853-886217999999999-----9999970542999999999506777777888989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHCC----------CCCCHHHH
Q ss_conf 68999997668999999998865311479--8862-02567777655542212232110002----------55879999
Q gi|254780924|r 276 QSAAQESLPLRDAFSVLFFISVGMMFNPD--ILIS-NPILLMMAVIIVIIGKALIAFIVVIA----------FGRSVATA 342 (609)
Q Consensus 276 ~~~~~~~~~~~~~~~~~fFv~iG~~l~~~--~l~~-~~~~~l~~~~~~~~~k~~~~~~~~~~----------~~~~~~~~ 342 (609)
T Consensus 242 ~rleh~l~p~v~~~IlPlFAfaNAGV~l~~~~~~~l~~~v~~gI~~GL~vGK~lGI~~~s~la~kl~~~~lP~g~~w~~l 321 (382)
T PRK09560 242 KHMEHALHPYVAFAILPVFAFANAGISLEGVSLSGLTSMLPLGIALGLFLGKPLGIFSFSWAAVKLGVAKLPEGVNFKHI 321 (382)
T ss_pred HHHHHHHCCCCCEEHHHHHHHHCCCEEECCCCHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 99999835231032477788741561005776787636689999999983333769999999999386779999988999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9986432122025678898876417--878668778778889999999999986
Q gi|254780924|r 343 LTIAASLSQIGEFSFILANLGVELG--ILPDQARDLILASSIISIILNPLVFVL 394 (609)
Q Consensus 343 ~~~g~~l~~~g~~~~v~a~~a~~~g--~i~~~~~~~i~~~~~~s~~itp~l~~~ 394 (609)
T Consensus 322 ~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigiL~~S~~sai~G~~~L~~ 375 (382)
T PRK09560 322 FAVSVLCGIGFTMSIFISSLAFGGANPEFDTYARLGILMGSTTAAVLGYFLLHI 375 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999888899999999851689986776106889999999999999999998