HHsearch alignment for GI: 254780924 and conserved domain: PRK10336
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional.
Probab=95.15 E-value=0.12 Score=28.07 Aligned_cols=93 Identities=17% Similarity=0.193 Sum_probs=61.4
Q ss_pred CEEEECCCHHHHHHHH----HCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH-HHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 0899719989999999----76992999789998999848931467999935996-899999999999589880899946
Q gi|254780924|r 473 ALLVIEDSEKKIEELR----SLGIDVIYGNATITKILLMANIEKARSLVVSISTA-FEAAYITQEARNSNPSILIIALAD 547 (609)
Q Consensus 473 ~v~vid~~~~~~~~~~----~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~-~~n~~~~~~~~~~~~~~~iia~~~ 547 (609)
T Consensus 2 kILlVEDd~~l~~~l~~~L~~~g~~V~~a-~~g~~a~~~~~~~~~DlvilDi~lP~~dG~~l~~~iR~~~~~~PII~lta 80 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWF-TQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA 80 (219)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEEC
T ss_conf 89999389999999999999879999998-99999999986289699999799999985631010465278887899806
Q ss_pred CHHHHH--HHHHCCCCEEE-CH
Q ss_conf 989999--99976998787-65
Q gi|254780924|r 548 SDSEVE--HLTRYGADTVV-MS 566 (609)
Q Consensus 548 ~~~~~~--~l~~~Ga~~vi-~p 566 (609)
T Consensus 81 ~~~~~d~i~~l~~GAdDYl~KP 102 (219)
T PRK10336 81 RDALAERVEGLRLGADDYLCKP 102 (219)
T ss_pred CCCHHHHHHHHHCCCCEEEECC
T ss_conf 8999999999976998886889